Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.6e-236 822.4 422 100.0
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 5.4e-184 647.9 434 81.3
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 3.1e-179 632.1 433 79.9
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 8.9e-179 630.6 424 79.5
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 2.0e-178 629.4 433 79.9
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 2.6e-178 629.0 433 79.2
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 7.5e-178 627.5 438 76.0
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 8.3e-177 624.0 431 76.6
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 5.4e-176 621.3 438 76.7
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 2.1e-175 619.4 434 79.7
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 3.5e-175 618.6 424 78.1
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 4.3e-173 611.7 433 77.1
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 5.6e-173 611.3 431 76.8
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 4.0e-171 605.1 451 73.8
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 6.8e-171 604.4 421 78.1
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 5.8e-170 601.3 431 75.4
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 4.3e-165 585.1 431 74.0
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.9e-160 569.7 424 74.5
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.1e-156 556.2 445 70.1
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 8.4e-137 491.1 435 62.3
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 2.1e-135 486.5 436 61.7
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 2.7e-135 486.1 431 61.0
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.8e-134 483.4 435 61.8
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 3.9e-134 482.3 438 60.7
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 5.1e-134 481.9 437 62.7
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 6.7e-134 481.5 437 61.3
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.3e-132 477.2 433 61.0
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.3e-132 477.2 435 60.2
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 1.6e-132 476.9 438 60.5
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 2.8e-132 476.1 425 60.9
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 8.2e-132 474.6 428 61.0
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.8e-131 473.4 428 60.7
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.5e-130 470.3 426 60.6
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.0e-130 469.9 428 59.3
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.6e-130 469.5 428 60.3
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.4e-130 469.2 425 60.5
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 3.4e-130 469.2 436 60.6
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 5.9e-130 468.4 475 56.4
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 2.2e-129 466.5 436 60.1
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 3.6e-127 459.1 437 59.0
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 6.1e-127 458.4 437 58.4
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 7.9e-127 458.0 426 61.3
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 9.7e-125 451.1 515 52.6
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.1e-123 447.6 435 57.7
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.4e-123 447.2 440 58.2
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 1.4e-123 447.2 435 57.7
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.3e-123 445.3 440 56.4
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.3e-123 445.3 440 56.4
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 5.3e-123 445.3 439 57.2
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 1.5e-122 443.7 419 57.3
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 3.4e-122 442.6 432 59.0
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 4.5e-122 442.2 435 57.5
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 5.9e-122 441.8 440 56.4
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.7e-121 440.3 439 57.6
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.4e-120 437.2 472 53.6
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.4e-120 437.2 424 58.3
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 2.5e-120 436.4 432 56.0
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 7.2e-120 434.9 439 57.2
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 9.4e-120 434.5 426 58.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 9.4e-120 434.5 460 55.2
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.2e-119 434.1 441 57.8
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 7.9e-119 431.4 440 55.9
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 5.1e-118 428.7 438 56.4
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 6.7e-118 428.3 430 55.8
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 6.7e-118 428.3 419 58.5
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 1.5e-117 427.2 445 53.0
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 3.3e-117 426.0 289 79.9
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 3.3e-117 426.0 431 55.9
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 4.4e-117 425.6 419 58.0
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 4.4e-117 425.6 439 56.3
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 7.4e-117 424.9 425 57.2
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 1.3e-116 424.1 430 56.0
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 2.2e-116 423.3 429 56.4
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 2.8e-116 422.9 436 54.4
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 4.8e-116 422.2 422 56.4
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 6.3e-116 421.8 426 56.6
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 8.2e-116 421.4 435 55.4
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 1.1e-115 421.0 436 53.7
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 3.1e-115 419.5 429 55.2
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 4.1e-115 419.1 437 55.6
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 5.3e-115 418.7 438 56.2
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 7.0e-115 418.3 436 53.9
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 2.6e-114 416.4 429 56.6
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 4.5e-114 415.6 444 54.3
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 5.9e-114 415.2 468 52.8
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.0e-113 414.5 436 53.7
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 2.9e-113 412.9 432 55.3
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 5.0e-113 412.1 430 54.7
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 4.2e-112 409.1 441 52.6
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 4.2e-112 409.1 430 54.4
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 5.7e-109 398.7 384 55.5
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 2.4e-107 393.3 375 61.3
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 1.6e-106 390.6 375 61.1
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 7.7e-106 388.3 424 51.7
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 1.9e-104 383.6 335 64.2
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 3.0e-102 376.3 428 52.8
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 1.2e-101 374.4 368 60.1
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.7e-100 370.5 435 49.4
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 1.2e-98 364.4 386 56.5
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.9e-96 357.1 439 47.4
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.8e-94 350.5 310 60.3
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 9.8e-93 344.7 274 64.6
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.8e-91 340.5 300 61.0
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 5.9e-90 335.5 345 55.4
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 3.6e-87 326.2 284 69.0
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 1.8e-86 323.9 431 45.5
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 8.3e-84 315.1 409 46.0
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 6.6e-81 305.4 238 64.3
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 8.9e-78 295.0 440 43.9
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 2.6e-77 293.5 449 41.6
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 8.9e-70 268.5 429 43.1
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-69 267.7 200 64.0
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 4.1e-67 259.6 393 41.2
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 6.0e-66 255.8 227 62.1
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.6e-63 247.7 426 40.1
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 8.1e-63 245.4 439 38.7
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 1.1e-62 245.0 447 37.8
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 4.9e-52 209.5 157 64.3
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 2.5e-48 197.2 265 45.7
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 2.8e-47 193.7 231 58.0
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.6e-47 193.4 157 58.6
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 6.2e-47 192.6 354 36.7
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 3.0e-41 173.7 340 36.8
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 1.7e-36 157.9 309 39.8
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.3e-28 131.7 105 61.9
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.9e-27 127.9 231 38.5
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 3.5e-26 123.6 126 57.9
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 3.5e-26 123.6 126 57.9
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 6.0e-26 122.9 118 50.8
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 3.9e-25 120.2 213 38.5
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.9e-24 117.9 235 30.2
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 7.4e-24 115.9 101 64.4
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 1.5e-21 108.2 139 53.2
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 1.0e-20 105.5 75 78.7
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 4.9e-20 103.2 125 50.4
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 1.4e-19 101.7 75 76.0
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 9.3e-19 99.0 89 59.6
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 9.3e-19 99.0 218 38.1
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 1.2e-18 98.6 261 29.5
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 2.3e-17 94.4 71 62.0
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 3.0e-17 94.0 71 62.0
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 4.8e-15 86.7 330 28.5
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 5.9e-13 79.7 207 32.4
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 6.5e-12 76.3 84 57.1
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 2.5e-11 74.3 157 38.2
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 3.2e-11 73.9 45 75.6
C08p52400 Brassica napus HOM05D004826 ORTHO05D042801 2.1e-10 71.2 46 80.4
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 7.9e-10 69.3 58 69.0
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 1.4e-09 68.6 197 26.9
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 1.8e-09 68.2 197 26.9
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 3.0e-09 67.4 187 27.8
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.1e-08 65.5 86 50.0
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 1.1e-08 65.5 196 24.5
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 2.0e-08 64.7 169 27.8
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 2.0e-08 64.7 198 27.8
Lj5P133T72 Lonicera japonica HOM05D000453 ORTHO05D000387 5.7e-08 63.2 201 27.9
BraA07t29793Z Brassica rapa HOM05D000645 ORTHO05D000494 1.3e-07 62.0 250 25.2
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 2.2e-07 61.2 188 26.6
Ah.08g212800 Amaranthus hybridus HOM05D002999 ORTHO05D003137 2.8e-07 60.8 196 25.5
Eucgr.D01697 Eucalyptus grandis HOM05D000645 ORTHO05D000494 2.8e-07 60.8 251 23.5
BcaC08g44576 Brassica carinata HOM05D000645 ORTHO05D000494 1.1e-06 58.9 320 24.7
BolC6t37220H Brassica oleracea HOM05D000645 ORTHO05D000494 1.1e-06 58.9 320 24.7
A07p21060 Brassica napus HOM05D000645 ORTHO05D000494 1.4e-06 58.5 320 24.4
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 3.1e-06 57.4 111 36.0
C06p20410 Brassica napus HOM05D000645 ORTHO05D000494 3.1e-06 57.4 320 24.4
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 5.3e-06 56.6 194 25.8
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 5.3e-06 56.6 194 25.8
FvH4_6g31950 Fragaria vesca HOM05D000453 ORTHO05D000387 5.3e-06 56.6 193 25.9
Lsat_1_v5_gn_6_82540 Lactuca sativa HOM05D000645 ORTHO05D000494 6.9e-06 56.2 255 23.9
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 9.1e-06 55.8 191 24.6
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 9.1e-06 55.8 191 24.6


User provided reference genes

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