Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p01620 Brassica napus HOM05D000070 ORTHO05D007395 1.0e-188 663.3 343 100.0
Sp1g01990 Schrenkiella parvula HOM05D000070 ORTHO05D007395 2.4e-126 456.1 271 87.5
Thhalv10006717m.g Eutrema salsugineum HOM05D000070 ORTHO05D007395 4.8e-122 441.8 298 80.2
BcaC07g42283 Brassica carinata HOM05D000070 ORTHO05D007395 6.2e-122 441.4 269 85.5
AL1G12450 Arabidopsis lyrata HOM05D000070 ORTHO05D007395 8.1e-122 441.0 280 83.2
CARHR002330 Cardamine hirsuta HOM05D000070 ORTHO05D007395 8.1e-122 441.0 271 84.5
Carub.0001s0213 Capsella rubella HOM05D000070 ORTHO05D007395 2.6e-120 436.0 271 83.0
C08p53040 Brassica napus HOM05D000070 ORTHO05D007395 2.2e-119 433.0 269 84.4
AT1G03000 Arabidopsis thaliana HOM05D000070 ORTHO05D007395 1.4e-118 430.3 298 77.9
A09p68430 Brassica napus HOM05D001550 ORTHO05D007395 1.9e-118 429.9 269 83.6
BolC8t52818H Brassica oleracea HOM05D000070 ORTHO05D007395 1.9e-118 429.9 269 83.3
BraA09t42179Z Brassica rapa HOM05D001550 ORTHO05D007395 1.9e-118 429.9 269 83.6
A10p01620 Brassica napus HOM05D001550 ORTHO05D007395 6.0e-117 424.9 248 90.3
Aa31LG1G9580 Aethionema arabicum HOM05D000070 ORTHO05D007395 1.8e-116 423.3 299 76.3
BolC5t28941H Brassica oleracea HOM05D000070 ORTHO05D007395 1.8e-116 423.3 249 90.0
BraA10t42439Z Brassica rapa HOM05D000070 ORTHO05D007395 6.7e-116 421.4 248 89.9
THA.LOC104825979 Tarenaya hassleriana HOM05D000070 ORTHO05D007395 4.3e-107 392.1 273 74.7
Carub.0001s0062 Capsella rubella HOM05D000070 ORTHO05D007395 7.7e-104 381.3 239 82.0
Cpa.g.sc441.4 Carica papaya HOM05D000070 ORTHO05D007395 3.8e-87 325.9 297 60.3
QL12p030669 Quercus lobata HOM05D000070 ORTHO05D007395 9.4e-86 321.2 267 62.2
QL12p030852 Quercus lobata HOM05D000070 ORTHO05D007395 9.4e-86 321.2 267 62.2
Potri.014G133000 Populus trichocarpa HOM05D000070 ORTHO05D007395 4.4e-83 312.4 268 63.1
Duzib133G0238 Durio zibethinus HOM05D000070 ORTHO05D007395 7.4e-83 311.6 273 61.2
Gohir.A08G073600 Gossypium hirsutum HOM05D000070 ORTHO05D007395 1.3e-82 310.8 270 59.6
Sabra14G0099300 Salix brachista HOM05D000070 ORTHO05D007395 2.2e-82 310.1 268 63.4
Gohir.D08G083000 Gossypium hirsutum HOM05D000070 ORTHO05D007395 2.8e-82 309.7 270 59.3
Cfa005990 Carpinus fangiana HOM05D000070 ORTHO05D007395 1.1e-81 307.8 297 57.2
Gorai.004G086800 Gossypium raimondii HOM05D000070 ORTHO05D007395 1.8e-81 307.0 270 58.9
TAR633G1234 Trochodendron aralioides HOM05D000070 ORTHO05D007395 4.1e-81 305.8 271 60.5
TWI23G0155 Tripterygium wilfordii HOM05D000070 ORTHO05D007395 5.3e-81 305.4 270 60.4
Manes.05G066100 Manihot esculenta HOM05D000070 ORTHO05D007395 7.7e-80 301.6 274 60.9
Lj1C36T4 Lonicera japonica HOM05D000070 ORTHO05D007395 1.3e-79 300.8 268 60.1
Thecc.01G293600 Theobroma cacao HOM05D000070 ORTHO05D007395 1.3e-79 300.8 270 58.5
CSS0031103 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D007395 8.5e-79 298.1 267 61.0
Atru.chr5.1235 Acer truncatum HOM05D000070 ORTHO05D007395 1.5e-78 297.4 297 54.9
Nn3g18628 Nelumbo nucifera HOM05D000070 ORTHO05D007395 9.4e-78 294.7 271 60.9
vmacro14983 Vaccinium macrocarpon HOM05D000070 ORTHO05D007395 9.4e-78 294.7 272 58.8
Nitab4.5_0000627g0010 Nicotiana tabacum HOM05D000070 ORTHO05D007395 2.7e-77 293.1 268 59.3
Ciclev10018729m.g Citrus clementina HOM05D000070 ORTHO05D007395 3.6e-77 292.7 268 60.4
GSVIVG01010963001 Vitis vinifera HOM05D000070 ORTHO05D007395 1.8e-76 290.4 270 57.4
Prupe.8G255300 Prunus persica HOM05D000070 ORTHO05D007395 2.3e-76 290.0 268 59.3
Migut.D00179 Erythranthe guttata HOM05D000070 ORTHO05D007395 3.0e-76 289.7 268 55.2
MD11G1301700 Malus domestica HOM05D000070 ORTHO05D007395 3.0e-76 289.7 297 53.9
FAN27G1086 Fragaria x ananassa HOM05D000070 ORTHO05D007395 8.8e-76 288.1 268 57.5
RcHm_v2.0_Chr6g0293081 Rosa chinensis HOM05D000070 ORTHO05D007395 1.2e-75 287.7 268 59.0
Solyc06g008730.3 Solanum lycopersicum HOM05D000070 ORTHO05D007395 1.5e-75 287.3 268 56.7
Oeu008494.1 Olea europaea HOM05D000070 ORTHO05D007395 2.0e-75 287.0 297 53.2
Haze_04854 Corylus avellana HOM05D000070 ORTHO05D007395 2.6e-75 286.6 335 50.4
CAN.G1492.8 Capsicum annuum HOM05D000070 ORTHO05D007395 4.4e-75 285.8 268 57.5
MSTRG.21609 Avicennia marina HOM05D000070 ORTHO05D007395 9.7e-75 284.6 270 54.4
Sopen06g003520 Solanum pennellii HOM05D000070 ORTHO05D007395 9.7e-75 284.6 268 56.3
Actinidia21068 Actinidia chinensis HOM05D000070 ORTHO05D007395 1.7e-74 283.9 267 57.7
PGSC0003DMG400005347 Solanum tuberosum HOM05D000070 ORTHO05D007395 2.2e-74 283.5 266 56.4
FAN24G0631 Fragaria x ananassa HOM05D000070 ORTHO05D007395 2.8e-74 283.1 268 57.1
FvH4_2g25060 Fragaria vesca HOM05D000070 ORTHO05D007395 3.7e-74 282.7 268 57.5
CiPaw.03G194600 Carya illinoinensis HOM05D000070 ORTHO05D007395 4.8e-74 282.3 258 59.3
CsaV3_7G028910 Cucumis sativus L. HOM05D000070 ORTHO05D007395 4.8e-74 282.3 268 54.1
Rhsim01G0282100 Rhododendron simsii HOM05D000070 ORTHO05D007395 1.1e-73 281.2 268 57.8
ClCG09G006220 Citrullus lanatus HOM05D000070 ORTHO05D007395 3.1e-73 279.6 297 50.8
Peaxi162Scf00572g00111 Petunia axillaris HOM05D000070 ORTHO05D007395 7.0e-73 278.5 301 53.8
PGR119G1212 Punica granatum HOM05D000070 ORTHO05D007395 9.1e-73 278.1 273 56.8
Lsat_1_v5_gn_8_54380 Lactuca sativa HOM05D000070 ORTHO05D007395 5.9e-72 275.4 267 56.9
SGA_v2.0_scaffold1G00391 Striga asiatica HOM05D000161 ORTHO05D007395 1.3e-71 274.2 274 55.5
Lalb_Chr18g0047281 Lupinus albus HOM05D000070 ORTHO05D007395 3.8e-71 272.7 270 55.9
FAN15G0057 Fragaria x ananassa HOM05D000070 ORTHO05D007395 6.5e-71 271.9 268 56.3
HanXRQChr11g0350101 Helianthus annuus HOM05D000070 ORTHO05D007395 8.5e-71 271.6 266 55.6
Sed0017243 Sechium edule HOM05D000070 ORTHO05D007395 1.9e-70 270.4 270 53.7
DCAR_002802 Daucus carota HOM05D000070 ORTHO05D007395 7.2e-70 268.5 219 62.1
Lj1g0003563 Lotus japonicus HOM05D000070 ORTHO05D007395 7.2e-70 268.5 269 56.1
Ca_08375_v3 Cicer arietinum L. HOM05D000070 ORTHO05D007395 3.6e-69 266.2 271 55.7
VMungo1383G0236 Vigna mungo HOM05D000070 ORTHO05D007395 4.7e-69 265.8 279 53.4
PSO782G5086 Papaver somniferum HOM05D000070 ORTHO05D007395 1.4e-68 264.2 271 54.6
Eucgr.H01193 Eucalyptus grandis HOM05D000070 ORTHO05D007395 1.8e-68 263.8 273 54.9
Nitab4.5_0005696g0050 Nicotiana tabacum HOM05D000070 ORTHO05D007395 1.8e-68 263.8 247 57.9
Phvul.001G204400 Phaseolus vulgaris HOM05D000070 ORTHO05D007395 2.3e-68 263.5 268 55.2
arahy.Tifrunner.gnm1.ann1.Z88H36 Arachis hypogaea HOM05D000070 ORTHO05D007395 4.0e-68 262.7 283 53.7
arahy.Tifrunner.gnm1.ann1.GG1WAR Arachis hypogaea HOM05D000070 ORTHO05D007395 6.8e-68 261.9 283 53.4
ECA236G0808 Erigeron canadensis HOM05D000070 ORTHO05D007395 8.8e-68 261.5 267 53.2
PSO063G2232 Papaver somniferum HOM05D000070 ORTHO05D007395 8.8e-68 261.5 271 54.6
TPR.G16081 Trifolium pratense HOM05D000070 ORTHO05D007395 8.8e-68 261.5 270 54.8
Glyma.19G208300 Glycine max HOM05D000070 ORTHO05D007395 2.0e-67 260.4 271 53.5
Sc05g0004360 Simmondsia chinensis HOM05D000070 ORTHO05D007395 4.4e-67 259.2 288 51.0
Psat3g080600 Pisum sativum HOM05D000070 ORTHO05D007395 1.3e-66 257.7 270 53.7
MELO3C016047.2 Cucumis melo HOM05D000070 ORTHO05D007395 2.2e-66 256.9 274 50.7
Hund05399 Selenicereus undatus HOM05D000070 ORTHO05D007395 2.2e-66 256.9 267 50.2
Cc01_g20480 Coffea canephora HOM05D000070 ORTHO05D007395 3.1e-65 253.1 270 53.0
Aqoxy1G01462 Aquilegia oxysepala HOM05D000070 ORTHO05D007395 1.2e-64 251.1 266 51.5
EL10Ac8g20415 Beta vulgaris HOM05D000070 ORTHO05D007395 1.2e-64 251.1 270 48.5
Medtr7g089290 Medicago truncatula HOM05D000070 ORTHO05D007395 2.3e-63 246.9 252 56.0
ATR0763G110 Amborella trichopoda HOM05D000070 ORTHO05D007395 3.8e-63 246.1 271 50.6
Dinv33019 Davidia involucrata HOM05D000070 ORTHO05D007395 6.6e-63 245.4 297 50.2
AUR62017042 Chenopodium quinoa HOM05D000070 ORTHO05D007395 1.5e-62 244.2 274 47.8
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 3.3e-62 243.0 269 52.8
HPP92_016677 Vanilla planifolia HOM05D000070 ORTHO05D007395 4.2e-62 242.7 270 48.1
AUR62014846 Chenopodium quinoa HOM05D000070 ORTHO05D007395 1.6e-61 240.7 273 46.5
BcaC07g42276 Brassica carinata HOM05D000070 ORTHO05D007395 4.7e-61 239.2 232 62.1
Lsat_1_v5_gn_3_70401 Lactuca sativa HOM05D003536 ORTHO05D000123 8.3e-50 201.8 203 54.7
Zm00001eb072100 Zea mays HOM05D000070 ORTHO05D007395 8.3e-50 201.8 272 43.4
Zm00001eb431070 Zea mays HOM05D000070 ORTHO05D007395 4.1e-49 199.5 272 43.0
SEGI_28649 Sequoiadendron giganteum HOM05D000070 ORTHO05D007395 9.2e-49 198.4 279 45.9
BcaC05g24582 Brassica carinata HOM05D000070 ORTHO05D007395 1.2e-48 198.0 191 63.4
Medtr7g089260 Medicago truncatula HOM05D000001 ORTHO05D000003 1.4e-44 184.5 154 62.3
Os04g0617600 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D007395 1.2e-43 181.4 271 41.0
SHI21519 Sapria himalayana HOM05D000002 ORTHO05D000001 8.6e-39 165.2 148 59.5
unitig_0.g1184 Utricularia gibba HOM05D002601 ORTHO05D002884 4.1e-33 146.4 180 47.8
SMO200G0083 Selaginella moellendorffii HOM05D000070 ORTHO05D007395 1.2e-32 144.8 254 39.8
Mapoly0037s0036 Marchantia polymorpha HOM05D000070 ORTHO05D007395 2.4e-28 130.6 208 37.0
AagrBONN_evm.TU.Sc2ySwM_368.410 Anthoceros agrestis HOM05D000070 ORTHO05D007395 6.8e-28 129.0 282 32.3
Pp3c17_21090 Physcomitrium patens HOM05D000070 ORTHO05D007395 1.3e-26 124.8 216 39.4
CBR_g36373 Chara braunii HOM05D000070 ORTHO05D007395 5.6e-22 109.4 207 34.3
MD03G1281700 Malus domestica HOM05D000070 ORTHO05D007395 7.1e-17 92.4 83 56.6
Psat7g034040 Pisum sativum HOM05D000070 ORTHO05D007395 4.6e-16 89.7 134 41.8
PRCOL_00004518 Prasinoderma coloniale HOM05D000070 ORTHO05D007395 2.1e-08 64.3 184 25.0
Cre10.g446250 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D007395 9.6e-06 55.5 139 32.4


User provided reference genes

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