Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.4e-81 306.2 149 100.0
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.4e-81 306.2 149 100.0
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 7.5e-80 300.4 149 98.7
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 7.5e-80 300.4 149 98.7
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 2.2e-79 298.9 148 98.6
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-79 298.9 157 94.9
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 2.2e-79 298.9 148 98.6
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 6.3e-79 297.4 148 98.0
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 5.0e-76 287.7 148 94.6
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 3.2e-75 285.0 148 93.2
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 3.2e-75 285.0 148 93.2
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 9.4e-75 283.5 148 94.6
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 9.4e-75 283.5 149 93.3
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 93.2
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 92.6
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 92.6
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 92.6
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 92.6
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.2e-74 283.1 148 92.6
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.6e-74 282.7 148 92.6
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.1e-74 282.3 144 95.8
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.7e-74 282.0 148 92.6
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.7e-74 282.0 148 91.9
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.7e-74 282.0 148 91.9
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.7e-74 282.0 147 93.2
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.6e-74 281.6 148 92.6
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.6e-74 281.6 148 91.9
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 4.7e-74 281.2 148 91.9
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.7e-74 281.2 148 91.2
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 4.7e-74 281.2 148 91.9
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 6.1e-74 280.8 148 92.6
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 6.1e-74 280.8 148 92.6
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.0e-74 280.4 149 90.6
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 8.0e-74 280.4 149 90.6
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 8.0e-74 280.4 148 91.9
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.0e-73 280.0 148 91.9
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.0e-73 280.0 148 91.2
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.0e-73 280.0 148 91.9
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.0e-73 280.0 148 91.2
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.0e-73 280.0 150 92.0
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.4e-73 279.6 150 92.0
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 91.2
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 90.5
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.4e-73 279.6 149 90.6
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.4e-73 279.6 148 91.2
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.8e-73 279.3 148 90.5
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.3e-73 278.9 148 91.2
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.3e-73 278.9 148 91.2
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.3e-73 278.9 148 91.2
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.3e-73 278.9 149 90.6
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 3.0e-73 278.5 149 89.9
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 3.0e-73 278.5 149 89.9
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 4.0e-73 278.1 148 92.6
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 4.0e-73 278.1 148 90.5
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 4.0e-73 278.1 148 89.9
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.2e-73 277.7 148 90.5
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.2e-73 277.7 148 90.5
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.2e-73 277.7 148 90.5
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 5.2e-73 277.7 147 91.2
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.2e-73 277.7 148 90.5
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.2e-73 277.7 152 90.1
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.2e-73 277.7 146 90.4
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.2e-73 277.7 146 90.4
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 6.8e-73 277.3 146 91.8
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.8e-73 277.3 146 91.8
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.8e-73 277.3 149 89.3
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 8.8e-73 276.9 148 89.9
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 8.8e-73 276.9 148 90.5
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 8.8e-73 276.9 148 90.5
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 8.8e-73 276.9 148 89.2
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 8.8e-73 276.9 148 90.5
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.2e-72 276.6 148 89.9
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.2e-72 276.6 149 89.3
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 90.5
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.9
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 90.5
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.9
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-72 276.2 148 89.9
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 2.0e-72 275.8 148 88.5
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 2.0e-72 275.8 148 89.9
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.0e-72 275.8 144 92.4
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 2.0e-72 275.8 147 89.8
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.6e-72 275.4 150 89.3
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.6e-72 275.4 150 89.3
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.6e-72 275.4 144 92.4
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.6e-72 275.4 144 92.4
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.6e-72 275.4 135 98.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.4e-72 275.0 148 89.2
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.4e-72 275.0 148 89.2
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 5.7e-72 274.2 149 89.3
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.7e-72 274.2 148 87.8
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 7.5e-72 273.9 148 87.8
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 9.8e-72 273.5 148 88.5
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 9.8e-72 273.5 148 87.8
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-71 273.1 148 87.2
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.7e-71 272.7 148 88.5
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-71 271.2 148 87.2
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-71 271.2 148 87.2
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 8.3e-71 270.4 148 87.8
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.1e-70 270.0 147 87.8
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.1e-70 270.0 147 87.8
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 4.1e-70 268.1 148 85.8
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 4.1e-70 268.1 147 86.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 7.0e-70 267.3 148 85.8
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.1e-70 266.9 143 88.8
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.6e-69 266.2 149 88.6
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.0e-69 265.8 149 88.6
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 7.7e-69 263.8 144 86.8
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.0e-68 263.5 143 88.1
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.2e-67 257.3 147 87.1
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.6e-66 256.1 143 86.0
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.0e-65 251.9 138 87.0
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 8.9e-65 250.4 128 93.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.2e-63 245.7 132 88.6
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 2.8e-63 245.4 128 91.4
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 4.9e-63 244.6 145 83.4
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 6.3e-63 244.2 128 91.4
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 6.3e-63 244.2 129 89.9
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 8.3e-63 243.8 132 89.4
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.1e-62 243.4 128 90.6
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.4e-62 243.0 128 89.1
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-62 242.7 143 82.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.4e-62 242.3 128 89.8
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 3.1e-62 241.9 128 89.8
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 3.1e-62 241.9 127 90.6
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 3.1e-62 241.9 127 90.6
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.1e-62 241.9 129 89.9
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 5.4e-62 241.1 129 88.4
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 7.0e-62 240.7 142 80.3
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 7.0e-62 240.7 127 89.0
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 9.2e-62 240.4 149 81.2
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.2e-61 240.0 127 89.0
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.2e-61 240.0 140 85.0
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 1.6e-61 239.6 128 89.1
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 3.5e-61 238.4 140 82.9
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 7.8e-61 237.3 129 89.9
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.6e-58 229.6 145 71.7
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.1e-58 229.2 126 86.5
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.0e-57 225.3 145 70.3
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.9e-55 218.0 147 70.7
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.2e-53 213.4 153 71.9
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 2.3e-52 209.1 190 59.5
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 2.8e-50 202.2 144 71.5
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 4.7e-50 201.4 122 77.9
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.3e-49 199.1 116 81.9
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 2.4e-46 189.1 115 86.1
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 7.0e-46 187.6 103 88.3
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.0e-45 186.0 116 73.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.7e-45 185.7 103 87.4
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 4.6e-45 184.9 103 88.3
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 5.2e-41 171.4 87 92.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 8.6e-36 154.1 79 89.9
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.5e-35 153.3 83 83.1
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.4e-33 146.7 79 89.9
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.8e-33 146.4 128 61.7
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.9e-30 136.3 71 94.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 1.6e-29 133.3 70 84.3
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-26 123.6 71 84.5
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.1e-25 120.6 71 83.1
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.2e-25 118.2 71 81.7
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 5.8e-24 114.8 77 76.6
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 3.8e-15 85.5 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.4e-14 81.6 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 4.3e-11 72.0 53 66.0


User provided reference genes

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