Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 1.6e-231 805.8 435 100.0
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 3.7e-228 794.7 437 98.9
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 4.1e-227 791.2 428 99.8
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 6.7e-214 747.3 434 95.4
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 2.0e-213 745.7 437 95.0
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 2.3e-190 669.1 464 82.5
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 4.9e-180 634.8 463 79.9
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 4.3e-176 621.7 451 79.8
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 2.1e-175 619.4 465 78.5
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 4.7e-159 565.1 465 73.8
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 1.5e-157 560.1 470 72.6
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 3.2e-155 552.4 409 79.2
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 2.0e-133 479.9 473 65.1
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 5.0e-108 395.6 464 56.7
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 2.5e-107 393.3 463 55.7
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 1.6e-106 390.6 467 55.5
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 2.1e-106 390.2 472 57.0
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 2.7e-106 389.8 472 55.5
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 2.7e-106 389.8 458 56.8
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 5.1e-105 385.6 465 55.1
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 1.1e-104 384.4 490 55.3
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 1.5e-104 384.0 453 56.5
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 2.6e-104 383.3 466 55.6
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 1.7e-103 380.6 467 56.3
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 2.8e-103 379.8 458 56.6
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 8.2e-103 378.3 496 50.8
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 1.4e-102 377.5 477 54.5
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 1.8e-102 377.1 453 57.0
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 3.1e-102 376.3 476 52.9
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 3.1e-102 376.3 485 49.3
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 4.1e-102 375.9 462 53.2
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 4.1e-102 375.9 472 53.8
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 4.1e-102 375.9 465 55.5
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 1.5e-101 374.0 454 55.9
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 1.5e-101 374.0 466 53.4
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 2.0e-101 373.6 449 55.2
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 2.6e-101 373.2 465 55.1
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 3.5e-101 372.9 453 55.0
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 4.5e-101 372.5 438 58.0
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 7.7e-101 371.7 467 54.4
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 7.7e-101 371.7 477 50.5
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 1.7e-100 370.5 466 54.7
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 2.2e-100 370.2 474 53.4
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 2.2e-100 370.2 460 52.0
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 2.9e-100 369.8 460 54.1
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 3.8e-100 369.4 458 54.8
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 5.0e-100 369.0 469 53.9
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 6.5e-100 368.6 485 51.8
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 5.5e-99 365.5 451 54.8
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 7.2e-99 365.2 468 52.6
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 9.4e-99 364.8 456 55.0
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 9.4e-99 364.8 486 46.3
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.2e-98 364.4 471 52.2
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 2.1e-98 363.6 451 54.3
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 3.6e-98 362.8 452 54.9
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 1.0e-97 361.3 489 52.1
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 1.8e-97 360.5 454 54.4
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 1.8e-97 360.5 444 54.7
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 2.3e-97 360.1 472 52.3
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 3.0e-97 359.8 481 52.4
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 3.0e-97 359.8 477 52.4
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 3.9e-97 359.4 451 54.1
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 8.8e-97 358.2 455 52.1
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 3.3e-96 356.3 455 55.2
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 9.7e-96 354.8 460 53.5
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 2.2e-95 353.6 458 52.4
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 3.7e-95 352.8 471 52.2
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 6.3e-95 352.1 467 52.2
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 8.2e-95 351.7 467 52.9
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 9.1e-94 348.2 477 52.6
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 2.6e-93 346.7 464 52.4
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 5.9e-93 345.5 476 51.3
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 5.9e-93 345.5 489 50.3
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 2.2e-92 343.6 443 53.7
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 3.8e-92 342.8 455 52.1
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 3.6e-90 336.3 462 51.7
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 4.7e-90 335.9 450 51.3
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 2.3e-89 333.6 447 51.7
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 6.8e-89 332.0 450 50.9
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.5e-88 330.9 459 51.6
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 2.6e-88 330.1 460 50.9
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 4.8e-87 325.9 463 50.3
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 1.1e-86 324.7 515 46.8
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 1.4e-86 324.3 501 41.5
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 3.1e-86 323.2 469 45.4
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 2.0e-85 320.5 391 56.5
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 2.0e-85 320.5 440 51.1
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 8.0e-82 308.5 435 49.9
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 7.2e-75 285.4 443 43.8
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 8.0e-74 282.0 437 48.1
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 2.3e-68 263.8 557 39.7
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 5.0e-68 262.7 542 39.9
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 5.0e-68 262.7 542 39.9
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 3.1e-65 253.4 470 43.4
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 4.0e-65 253.1 351 49.0
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 1.9e-51 207.6 577 32.2
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 3.9e-44 183.3 229 49.8
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 1.2e-42 178.3 284 41.2
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 2.8e-42 177.2 221 48.9
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 5.8e-40 169.5 239 45.6
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 3.5e-37 160.2 257 42.8
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 3.0e-36 157.1 118 70.3
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 5.3e-33 146.4 362 38.1
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 7.6e-32 142.5 96 76.0
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 7.1e-30 136.0 193 46.6
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 2.3e-28 131.0 83 81.9
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.5e-27 127.5 224 37.1
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 5.6e-27 126.3 396 35.4
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 4.0e-25 120.2 173 43.4
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 6.9e-25 119.4 126 59.5
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 8.4e-23 112.5 139 46.8
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 7.9e-21 105.9 364 36.0
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 6.7e-20 102.8 159 43.4
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 8.1e-18 95.9 50 94.0
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 8.4e-15 85.9 142 38.0
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 2.5e-14 84.3 142 38.0
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 5.5e-14 83.2 179 44.7
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 7.1e-14 82.8 56 67.9
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 4.6e-13 80.1 79 59.5
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 8.4e-07 59.3 98 43.9
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 2.5e-06 57.8 178 34.3
BcaC08g44661 Brassica carinata HOM05D037809 ORTHO05D032027 9.3e-06 55.8 55 58.2


User provided reference genes

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