Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-129 466.8 350 100.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 3.5e-120 435.6 350 96.9
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.6e-109 400.2 416 71.6
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 2.1e-109 399.8 351 93.4
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.5e-107 393.7 356 87.1
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 5.8e-107 391.7 358 86.3
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 5.8e-107 391.7 358 86.3
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.8e-107 391.7 211 90.5
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 4.9e-106 388.7 360 86.1
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 6.0e-104 381.7 360 88.6
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 7.3e-102 374.8 361 87.5
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.1e-101 373.2 360 87.2
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 2.1e-101 373.2 360 84.4
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 6.2e-101 371.7 381 83.7
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 1.8e-100 370.2 375 73.1
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.4e-100 369.8 197 91.4
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 3.1e-100 369.4 197 90.9
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 2.6e-99 366.3 350 85.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 6.6e-95 351.7 197 84.8
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.5e-94 350.5 197 84.3
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.5e-94 350.5 197 84.3
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.5e-94 350.5 197 84.8
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.3e-94 349.4 197 83.8
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.2e-93 347.4 197 83.8
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 1.2e-93 347.4 224 80.8
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 3.6e-93 345.9 197 83.8
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 6.2e-93 345.1 197 82.2
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 8.1e-93 344.7 197 83.8
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 8.1e-93 344.7 197 82.7
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.1e-92 344.4 209 78.5
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.4e-92 343.2 197 83.2
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.4e-92 343.2 197 83.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.4e-92 343.2 197 83.2
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 3.1e-92 342.8 197 81.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 3.1e-92 342.8 197 82.2
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 4.0e-92 342.4 197 82.7
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 5.3e-92 342.0 197 82.7
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.2e-91 340.9 197 82.2
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.2e-91 340.9 197 82.2
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.5e-91 340.5 197 82.2
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.0e-91 340.1 211 79.1
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.0e-91 340.1 197 80.7
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.6e-91 339.7 197 82.2
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 3.4e-91 339.3 196 83.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.4e-91 339.3 197 80.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.4e-91 339.0 197 81.2
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.4e-91 339.0 197 80.7
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.2
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 5.8e-91 338.6 197 81.7
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 7.6e-91 338.2 197 81.7
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 7.6e-91 338.2 196 80.6
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 7.6e-91 338.2 353 69.1
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 7.6e-91 338.2 196 81.6
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.3e-90 337.4 197 81.7
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.3e-90 337.4 197 82.2
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.3e-90 337.4 197 80.2
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 1.7e-90 337.0 197 81.7
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.7e-90 337.0 197 81.7
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.7e-90 337.0 197 79.7
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.7e-90 337.0 197 79.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 2.9e-90 336.3 224 76.3
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 2.9e-90 336.3 197 80.2
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 3.8e-90 335.9 196 81.1
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 3.8e-90 335.9 196 81.1
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.8e-90 335.9 197 81.7
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.8e-90 335.9 197 81.7
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 3.8e-90 335.9 197 81.7
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 4.9e-90 335.5 195 80.0
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 6.4e-90 335.1 197 79.7
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 8.4e-90 334.7 197 79.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 8.4e-90 334.7 196 82.1
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.1e-89 334.3 197 79.7
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.4e-89 334.0 197 79.7
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.4e-89 334.0 197 79.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.9e-89 333.6 197 81.2
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.9e-89 333.6 197 81.7
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 1.9e-89 333.6 197 81.7
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 2.4e-89 333.2 196 79.6
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 3.2e-89 332.8 197 80.2
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 3.2e-89 332.8 197 81.2
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 5.4e-89 332.0 195 80.0
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.2e-88 330.9 197 80.2
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 2.7e-88 329.7 197 80.2
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 3.5e-88 329.3 196 80.1
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 3.5e-88 329.3 197 80.7
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.5e-88 329.3 197 80.2
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 6.0e-88 328.6 197 80.2
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 7.8e-88 328.2 197 79.2
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.3e-87 327.4 196 80.6
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 3.9e-87 325.9 196 77.6
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.5e-86 323.9 197 77.7
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 7.3e-86 321.6 196 76.5
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.8e-85 318.9 242 66.5
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 8.1e-85 318.2 197 76.6
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.5e-83 313.9 197 77.2
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.5e-83 313.9 197 74.6
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.0e-83 313.5 246 65.4
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 5.8e-83 312.0 197 74.1
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 2.2e-82 310.1 197 75.1
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 4.9e-82 308.9 215 71.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 7.9e-80 301.6 197 72.6
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.8e-79 300.4 174 81.0
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 5.1e-79 298.9 196 71.4
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.7e-79 298.5 359 54.9
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 8.7e-79 298.1 273 58.2
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.8e-77 293.1 207 70.0
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.1e-76 289.7 359 48.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 6.9e-76 288.5 162 85.2
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.4e-75 286.2 162 83.3
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 9.0e-68 261.5 197 68.5
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.5e-67 260.8 197 61.4
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.8e-63 247.3 193 65.3
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 3.3e-54 216.5 192 54.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 5.0e-50 202.6 191 51.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 1.9e-49 200.7 199 51.8
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.8e-45 186.8 146 64.4
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 4.5e-43 179.5 101 79.2
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.0e-38 164.1 94 78.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 9.7e-38 161.8 93 79.6
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 7.0e-36 155.6 94 76.6
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 8.8e-23 112.1 74 70.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.4e-22 110.2 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.4e-22 110.2 70 71.4
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.8e-16 90.5 52 80.8
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 2.0e-14 84.3 53 66.0
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.3e-13 81.6 60 66.7
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.2e-13 80.9 69 60.9
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 5.0e-10 69.7 42 73.8
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 1.9e-09 67.8 189 63.5
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 2.3e-07 60.8 79 51.9
BcaB06g29159 Brassica carinata HOM05D005421 ORTHO05D031077 2.6e-06 57.4 31 83.9
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 7.5e-06 55.8 27 88.9


User provided reference genes

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