Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 8.8e-200 700.3 406 100.0
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.5e-186 655.6 381 100.0
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.7e-182 642.9 377 99.2
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 9.5e-178 627.1 388 94.1
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 1.0e-176 623.6 381 93.4
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.6e-175 619.0 381 89.2
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 3.5e-164 582.0 402 86.3
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 4.6e-164 581.6 403 82.4
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.5e-162 576.6 380 81.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 5.6e-162 574.7 383 84.1
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 2.8e-161 572.4 383 83.6
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.5e-159 566.6 383 88.0
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.5e-138 496.9 380 74.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 5.8e-135 485.0 383 68.9
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.3e-131 473.0 380 71.6
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 5.8e-127 458.4 433 61.0
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 1.4e-120 437.2 385 66.0
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.4e-109 400.6 379 64.4
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.8e-107 393.7 392 61.5
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.6e-92 344.0 385 56.1
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 2.3e-91 340.1 381 54.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 5.2e-91 339.0 384 51.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 2.6e-90 336.7 377 52.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 2.2e-89 333.6 376 51.9
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.1e-88 331.3 379 53.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-88 330.9 381 53.3
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.4e-88 330.9 381 53.3
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.4e-88 330.9 381 52.5
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.8e-88 330.5 386 52.3
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 2.4e-88 330.1 381 51.4
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.1e-88 329.7 383 52.0
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 4.1e-88 329.3 383 51.7
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 7.0e-88 328.6 379 52.5
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.6e-87 327.4 379 51.5
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.0e-87 327.0 391 51.9
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 2.6e-87 326.6 384 50.5
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 3.5e-87 326.2 382 51.8
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 7.7e-87 325.1 386 51.8
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.2e-86 323.6 377 50.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.2e-86 323.6 381 52.0
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 6.5e-86 322.0 379 51.2
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.5e-86 322.0 376 51.9
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 8.5e-86 321.6 375 49.9
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 8.5e-86 321.6 386 50.3
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.1e-85 321.2 375 49.9
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 2.5e-85 320.1 391 51.2
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.2e-85 319.7 378 51.6
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 4.2e-85 319.3 376 49.7
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 5.5e-85 318.9 386 50.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 7.2e-85 318.5 386 51.6
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.4e-85 318.2 380 50.0
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.2e-84 317.8 385 51.7
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.2e-84 317.8 376 50.0
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.2e-84 317.8 376 49.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.2e-84 317.8 378 50.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.1e-84 317.0 380 52.4
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.7e-84 316.6 381 50.7
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.6e-84 316.2 377 52.3
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 4.7e-84 315.8 376 49.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 4.7e-84 315.8 402 48.5
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 6.1e-84 315.5 375 49.6
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.1e-84 315.5 377 52.3
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 8.0e-84 315.1 375 48.8
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 8.0e-84 315.1 378 51.3
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 1.0e-83 314.7 382 49.2
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 2.3e-83 313.5 385 50.1
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 3.0e-83 313.2 398 47.5
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 4.0e-83 312.8 376 51.3
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.7e-83 312.0 396 47.7
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 1.2e-82 311.2 389 49.1
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.5e-82 310.8 395 48.1
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-82 310.8 381 51.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.0e-82 310.5 381 50.9
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.0e-82 310.5 372 49.7
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.6e-82 310.1 385 48.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.3e-82 309.7 379 46.7
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 4.4e-82 309.3 383 58.7
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.5e-82 308.5 393 50.4
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.3e-81 307.8 380 49.7
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.3e-81 307.8 381 50.9
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 2.2e-81 307.0 375 48.3
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.7e-81 306.2 395 47.1
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 8.3e-81 305.1 385 49.1
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-80 304.7 405 49.4
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.8e-80 303.9 378 48.7
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 2.4e-80 303.5 399 47.9
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 4.1e-80 302.8 383 47.5
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 5.3e-80 302.4 383 58.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.3e-80 302.4 393 49.4
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 9.1e-80 301.6 387 54.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 5.9e-79 298.9 387 49.1
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 5.9e-79 298.9 384 48.2
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.0e-78 298.1 378 48.9
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.9e-78 296.6 409 47.7
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.9e-78 296.6 380 49.5
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.5e-77 294.3 441 43.1
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.9e-77 293.9 386 54.7
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 3.2e-77 293.1 379 48.8
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 7.2e-77 292.0 377 46.9
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 9.4e-77 291.6 384 46.4
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.1e-76 290.4 405 44.9
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 2.7e-76 290.0 381 47.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 8.0e-76 288.5 378 51.9
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.8e-75 287.3 357 50.1
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.7e-73 280.8 391 46.0
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 6.3e-73 278.9 376 46.3
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.4e-72 277.7 411 44.3
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 1.4e-67 261.2 360 43.6
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.0e-67 259.6 361 45.4
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 7.5e-66 255.4 388 44.8
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.3e-65 254.6 385 42.9
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.7e-65 254.2 388 44.6
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 8.6e-62 241.9 376 43.1
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.1e-59 233.4 376 40.4
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.6e-55 219.5 209 60.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 6.0e-55 219.2 398 37.9
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 4.7e-52 209.5 236 53.4
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 2.2e-49 200.7 330 47.9
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.0e-47 192.6 305 43.3
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 3.9e-46 189.9 447 32.7
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 4.9e-41 172.9 363 34.7
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.9e-34 148.7 204 42.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 2.4e-32 144.1 283 42.8
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.9e-29 134.4 162 52.5
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.5e-26 124.8 382 29.6
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 2.2e-25 120.9 97 66.0
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 6.4e-25 119.4 93 62.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 4.2e-16 90.1 227 33.5
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 6.0e-15 86.3 56 76.8
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.3e-14 85.1 67 61.2
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-13 82.0 101 50.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 6.2e-12 76.3 55 69.1
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 4.0e-11 73.6 408 23.5
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 6.9e-11 72.8 231 31.2
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 9.0e-11 72.4 45 75.6
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.2e-10 72.0 89 41.6
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.9e-08 64.7 68 54.4


User provided reference genes

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