Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1849.7 926 100.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 0.0e+00 1836.6 945 97.9
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1748.8 926 95.5
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 0.0e+00 1723.4 947 92.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 0.0e+00 1536.2 948 83.9
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1501.1 939 82.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 0.0e+00 1499.2 943 82.4
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 0.0e+00 1495.3 947 82.4
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 0.0e+00 1493.0 949 81.3
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 0.0e+00 1469.5 941 81.1
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 0.0e+00 1461.4 936 80.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1359.4 908 78.1
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 0.0e+00 1317.0 959 73.6
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 0.0e+00 1312.0 948 73.8
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 0.0e+00 1221.8 942 70.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 0.0e+00 1176.4 945 66.5
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.9e-267 925.6 563 84.0
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.2e-257 893.6 983 51.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.0e-255 886.3 959 51.8
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 3.4e-255 885.6 976 51.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 5.8e-255 884.8 949 52.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 3.2e-253 879.0 975 51.4
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 8.6e-251 870.9 964 51.2
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 4.3e-250 868.6 977 51.1
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 5.6e-250 868.2 942 50.5
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.5e-250 867.5 955 51.1
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.1e-249 866.3 928 51.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 4.4e-247 858.6 967 50.9
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.3e-246 857.1 938 51.1
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.3e-246 857.1 952 51.5
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.1e-245 852.0 952 51.5
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.7e-244 849.4 977 50.6
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 3.3e-242 842.4 980 49.7
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.3e-242 842.0 976 50.9
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.1e-241 839.7 958 50.3
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-240 837.0 951 50.8
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 4.0e-240 835.5 950 50.6
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 5.2e-240 835.1 966 48.9
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 6.8e-240 834.7 973 49.9
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.2e-239 833.9 976 50.4
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 5.8e-239 831.6 905 50.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.9e-238 829.3 933 48.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.7e-238 828.9 942 50.1
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.9e-238 828.6 942 50.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 4.1e-237 825.5 994 49.7
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.2e-236 823.9 780 55.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.2e-236 823.9 949 49.5
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.6e-236 823.5 959 48.0
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.7e-235 820.1 973 48.6
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.7e-235 820.1 962 47.9
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-235 820.1 967 48.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 6.6e-235 818.1 957 47.5
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 5.6e-234 815.1 971 47.9
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.3e-234 814.7 948 49.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 9.5e-234 814.3 936 50.1
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.6e-233 812.4 948 49.1
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 6.2e-233 811.6 929 49.9
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 3.1e-232 809.3 977 48.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 5.2e-232 808.5 992 47.4
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 1.2e-231 807.4 907 51.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.4e-231 805.4 895 50.7
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.8e-231 805.1 966 47.6
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.3e-230 803.9 939 48.7
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.7e-230 803.5 997 47.7
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.9e-230 802.0 965 50.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 4.9e-230 802.0 967 47.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.9e-230 802.0 973 48.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.1e-229 800.8 907 48.2
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 3.2e-229 799.3 971 47.3
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 4.2e-229 798.9 907 49.8
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 2.1e-228 796.6 971 48.6
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 7.8e-228 794.7 969 46.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.0e-227 794.3 973 48.3
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.0e-227 794.3 963 48.0
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-227 793.5 920 49.8
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.0e-227 792.7 1013 47.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 3.0e-227 792.7 972 47.1
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.9e-227 792.3 964 48.3
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 8.7e-227 791.2 981 47.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.9e-226 790.0 922 47.5
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.2e-225 787.3 972 47.3
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 6.2e-225 785.0 957 47.6
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 4.4e-223 778.9 658 60.3
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 3.8e-222 775.8 939 48.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.8e-222 775.8 956 47.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.4e-221 773.1 663 57.9
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 5.4e-221 771.9 899 48.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.6e-220 770.4 965 45.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.6e-220 770.4 965 45.7
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.7e-219 766.9 697 56.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 9.6e-218 761.1 659 58.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.1e-216 757.7 829 50.9
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 6.9e-216 755.0 707 54.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.2e-215 754.2 935 46.0
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.5e-215 753.8 914 48.7
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.1e-211 738.8 938 47.2
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-210 737.6 963 46.2
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 6.9e-208 728.4 687 54.9
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 5.8e-207 725.3 833 49.8
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 6.4e-206 721.8 940 45.1
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.4e-197 694.1 941 45.2
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.4e-192 677.6 791 48.3
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.4e-192 676.8 780 48.1
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.8e-190 669.5 969 43.1
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.7e-185 654.1 615 56.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 7.7e-183 645.2 673 49.9
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 8.5e-182 641.7 947 41.2
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.1e-181 641.3 664 50.0
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.8e-179 631.7 928 42.8
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.2e-163 579.3 682 46.2
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.5e-162 575.5 730 46.4
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 7.7e-159 565.5 726 44.2
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 7.5e-154 548.9 632 46.0
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.3e-153 548.1 436 61.9
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 9.1e-152 542.0 439 62.4
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.5e-149 534.6 850 40.1
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.6e-148 531.2 669 44.2
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.1e-144 518.5 668 44.2
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 3.2e-136 490.3 698 43.3
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.6e-133 479.6 688 44.5
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.8e-130 468.8 428 60.7
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.7e-113 414.8 662 38.5
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.5e-109 401.7 711 34.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-109 400.6 253 81.8
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.3e-109 400.2 721 37.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.6e-106 389.4 475 44.8
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 3.0e-102 377.5 328 68.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 9.9e-98 362.5 286 63.3
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.5e-93 347.8 497 44.7
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.0e-78 299.3 546 39.0
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 7.7e-74 283.1 277 56.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-71 275.0 271 59.4
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.0e-65 256.1 243 56.0
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.4e-61 240.0 200 60.0
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 2.8e-60 238.0 234 53.0
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.0e-58 231.9 211 58.3
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.8e-49 201.1 175 58.3
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.7e-39 168.3 312 37.5
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-37 162.5 133 61.7
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 4.9e-36 157.5 134 59.7
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 9.2e-35 153.3 620 25.5
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.6e-34 152.5 175 44.6
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.0e-34 152.1 167 53.9
C04p07680 Brassica napus HOM05D004501 ORTHO05D023925 5.9e-34 150.6 120 72.5
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.6e-29 135.2 114 55.3
BraA05t19626Z Brassica rapa HOM05D004501 ORTHO05D023925 1.1e-24 119.8 120 64.2
A05p06580 Brassica napus HOM05D004501 ORTHO05D023925 1.5e-24 119.4 120 64.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 9.5e-24 116.7 191 39.3
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.3e-17 96.3 78 56.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 1.2e-13 83.2 297 31.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.6e-10 71.2 42 81.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 7.8e-10 70.5 95 42.1
BcaB02g09086 Brassica carinata HOM05D004501 ORTHO05D023925 8.6e-09 67.0 52 71.2


User provided reference genes

Program Settings