Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 4.8e-252 874.0 438 100.0
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 3.7e-228 794.7 442 93.2
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 6.5e-225 783.9 463 88.3
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 2.3e-209 732.3 442 86.4
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 6.2e-183 644.4 444 75.2
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 8.1e-183 644.0 444 75.0
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 4.9e-180 634.8 443 74.9
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.1e-179 633.6 443 74.7
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 1.3e-167 593.6 450 71.6
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.9e-164 582.4 454 70.7
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 1.1e-163 580.5 425 72.5
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-157 560.5 449 69.3
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 5.1e-153 545.0 450 65.3
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 2.5e-152 542.7 454 67.2
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 7.6e-149 531.2 453 63.1
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.3e-148 530.4 445 63.8
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.1e-147 527.3 452 63.9
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 5.7e-144 515.0 453 62.7
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 3.1e-142 509.2 449 61.7
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.2e-141 507.3 447 62.0
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.9e-139 500.0 450 62.9
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.2e-135 486.5 455 59.1
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 6.9e-134 481.5 434 61.3
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 5.7e-128 461.8 450 56.4
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.4e-126 457.2 465 59.4
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 6.3e-119 431.8 444 55.2
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.9e-116 422.9 437 55.6
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.8e-113 413.7 452 54.6
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.0e-109 400.2 439 51.3
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 7.7e-109 398.3 448 49.3
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.5e-107 393.3 392 58.7
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 5.2e-105 385.6 441 47.6
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.4e-104 382.9 446 47.1
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 6.3e-103 378.6 446 47.1
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 1.4e-102 377.5 446 47.3
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 9.1e-102 374.8 458 50.4
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.6e-101 374.0 443 47.2
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 2.7e-101 373.2 450 46.2
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 7.7e-101 371.7 450 46.7
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.3e-100 370.9 437 47.8
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.3e-100 370.2 429 49.0
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 6.6e-100 368.6 449 47.7
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 8.6e-100 368.2 429 47.6
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.5e-99 367.5 446 46.9
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 2.5e-99 366.7 427 47.8
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 2.5e-99 366.7 429 47.3
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 5.5e-99 365.5 444 47.3
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 5.5e-99 365.5 451 47.7
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 4.7e-98 362.5 430 47.4
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 8.0e-98 361.7 433 47.3
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 1.4e-97 360.9 428 47.2
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.8e-97 360.5 454 47.1
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 5.2e-97 359.0 433 46.7
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.8e-97 358.6 450 45.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 6.8e-97 358.6 450 45.3
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.5e-96 357.5 450 45.6
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 2.2e-95 353.6 450 45.6
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 2.8e-95 353.2 445 44.9
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 4.9e-95 352.4 429 45.5
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.9e-95 352.4 446 45.3
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 6.3e-95 352.1 450 45.3
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 6.3e-95 352.1 435 48.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 8.3e-95 351.7 419 48.0
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 8.3e-95 351.7 433 46.4
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.4e-94 350.9 449 44.5
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 1.8e-94 350.5 423 46.3
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 9.2e-94 348.2 433 46.9
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 4.5e-93 345.9 434 46.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 5.9e-93 345.5 452 45.4
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.3e-92 344.4 444 43.9
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 3.9e-92 342.8 445 43.4
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 6.6e-92 342.0 443 44.5
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-91 341.3 422 46.7
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 1.9e-91 340.5 427 50.1
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.2e-90 337.8 450 43.8
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.2e-90 337.8 431 45.0
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.8e-90 336.7 431 44.8
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 3.6e-90 336.3 409 51.8
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 3.6e-90 336.3 468 42.5
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 8.0e-90 335.1 432 44.4
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 1.0e-89 334.7 443 44.0
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 1.8e-89 334.0 451 44.1
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.0e-89 332.8 412 48.8
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 8.9e-89 331.6 440 45.0
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.5e-88 330.9 438 42.7
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 5.8e-88 328.9 437 44.4
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 7.5e-88 328.6 436 43.6
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 7.5e-88 328.6 437 44.4
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 2.9e-87 326.6 434 44.5
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 1.4e-86 324.3 440 44.5
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 3.2e-86 323.2 503 39.8
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 5.4e-86 322.4 441 43.3
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 7.0e-86 322.0 494 39.3
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.0e-85 320.5 441 43.1
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 7.8e-85 318.5 424 43.9
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 7.8e-85 318.5 436 44.5
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.0e-84 318.2 445 42.7
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.7e-84 317.4 521 37.6
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 2.3e-84 317.0 539 37.3
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.6e-84 315.1 449 42.3
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.9e-83 313.9 533 37.3
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 2.5e-83 313.5 455 41.8
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.5e-83 313.5 440 44.3
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 7.3e-83 312.0 533 37.1
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 7.3e-83 312.0 422 43.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 1.6e-82 310.8 429 45.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 2.1e-82 310.5 440 43.0
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.6e-82 309.7 355 47.0
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 6.2e-82 308.9 454 42.3
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 5.2e-81 305.8 439 43.5
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.0e-80 303.9 420 44.8
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 2.6e-80 303.5 423 44.2
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 9.8e-80 301.6 413 42.4
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.1e-78 298.1 468 38.5
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 1.1e-78 298.1 443 42.2
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 3.5e-77 293.1 427 41.5
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.5e-75 287.7 335 46.0
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 2.5e-75 287.0 413 41.6
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 8.1e-74 282.0 450 39.1
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 6.8e-73 278.9 480 37.7
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.8e-73 278.9 400 43.2
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.8e-73 278.9 391 42.7
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.4e-72 276.2 425 39.5
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 4.4e-72 276.2 425 39.5
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.3e-71 274.6 451 40.4
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 2.9e-71 273.5 439 39.9
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.4e-70 270.4 454 39.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.4e-70 270.4 442 39.4
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.4e-70 270.4 442 39.4
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.2e-70 270.0 446 39.5
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 4.1e-70 269.6 441 38.5
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 5.4e-70 269.2 442 39.4
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 6.0e-69 265.8 416 39.2
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.2e-66 258.1 428 40.0
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 1.6e-66 257.7 359 43.7
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 4.7e-66 256.1 452 37.8
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.0e-65 253.1 340 42.9
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 1.5e-64 251.1 426 37.8
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.1e-61 240.7 264 49.6
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 3.0e-60 236.9 301 43.9
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 8.7e-60 235.3 272 55.1
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.5e-59 233.8 495 34.5
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 5.3e-57 226.1 387 39.3
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 9.9e-56 221.9 316 44.9
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 2.9e-55 220.3 337 40.9
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.2e-54 216.9 353 39.7
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 2.7e-53 213.8 458 31.7
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 1.0e-52 211.8 434 33.6
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 1.5e-51 208.0 188 63.8
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 7.3e-51 205.7 485 31.3
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 7.3e-51 205.7 485 31.3
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 1.9e-46 191.0 351 38.5
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 3.2e-46 190.3 462 32.0
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 1.4e-41 174.9 239 44.4
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 1.4e-38 164.9 188 46.3
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 5.8e-32 142.9 169 46.2
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.2e-29 135.2 289 31.8
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 8.7e-28 129.0 114 58.8
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.5e-27 128.3 177 42.4
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.3e-27 127.1 155 44.5
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 5.7e-27 126.3 482 24.5
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 5.3e-25 119.8 72 83.3
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 2.6e-24 117.5 175 42.3
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 1.2e-21 108.6 200 37.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 5.1e-20 103.2 78 55.1
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 1.5e-19 101.7 103 46.6
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 2.0e-19 101.3 347 25.6
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 4.5e-16 90.1 72 61.1
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 7.7e-16 89.4 132 43.2
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 1.0e-15 89.0 246 29.3
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.8e-15 87.0 440 23.6
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 2.1e-13 81.3 39 84.6
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 2.1e-13 81.3 39 84.6
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 3.6e-13 80.5 72 54.2
BcaC04g23416 Brassica carinata HOM05D003112 ORTHO05D003660 2.0e-11 74.7 41 90.2
C09p08570 Brassica napus HOM05D003112 ORTHO05D003660 2.0e-11 74.7 41 90.2
BolC9t53766H Brassica oleracea HOM05D003112 ORTHO05D003660 2.0e-11 74.7 41 90.2
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 4.4e-11 73.6 305 24.3
BraA05t21411Z Brassica rapa HOM05D003539 ORTHO05D003660 1.8e-09 68.2 39 87.2
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 9.1e-09 65.9 118 33.9
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 3.8e-07 60.5 44 61.4
Aa31sc1240G10 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.1e-06 58.9 55 58.2


User provided reference genes

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