Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p62840 Brassica napus HOM05D001502 ORTHO05D002950 1.2e-56 223.0 116 100.0
BcaC02g07832 Brassica carinata HOM05D001502 ORTHO05D002950 2.2e-47 192.2 97 100.0
BcaB06g28681 Brassica carinata HOM05D001502 ORTHO05D002950 2.9e-47 191.8 101 96.0
BolC4t27767H Brassica oleracea HOM05D001502 ORTHO05D002950 2.5e-43 178.7 112 86.6
BraA09t38328Z Brassica rapa HOM05D001502 ORTHO05D002950 2.2e-26 122.5 134 56.0
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 2.0e-24 115.9 134 53.0
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 2.0e-24 115.9 134 53.0
BolC9t56342H Brassica oleracea HOM05D001502 ORTHO05D002950 5.0e-23 111.3 134 53.0
BraA09t38327Z Brassica rapa HOM05D001502 ORTHO05D002950 8.5e-23 110.5 134 51.5
BcaB01g01658 Brassica carinata HOM05D001502 ORTHO05D002950 1.1e-22 110.2 115 58.3
BcaC04g21150 Brassica carinata HOM05D001502 ORTHO05D002950 1.5e-22 109.8 134 52.2
BolC9t56340H Brassica oleracea HOM05D001502 ORTHO05D002950 1.5e-22 109.8 134 52.2
BcaC04g21151 Brassica carinata HOM05D001502 ORTHO05D002950 2.5e-22 109.0 134 52.2
BolC9t56338H Brassica oleracea HOM05D001502 ORTHO05D002950 2.5e-22 109.0 134 52.2
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 2.7e-21 105.5 129 51.2
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 5.2e-20 101.3 131 51.9
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 2.0e-19 99.4 130 49.2
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 2.2e-18 95.9 130 48.5
BcaC04g21078 Brassica carinata HOM05D001502 ORTHO05D002950 2.2e-18 95.9 130 48.5
BolC9t56433H Brassica oleracea HOM05D001502 ORTHO05D002950 2.2e-18 95.9 130 48.5
BolC9t56434H Brassica oleracea HOM05D001502 ORTHO05D002950 2.2e-18 95.9 130 48.5
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 5.3e-17 91.3 124 46.8
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 1.2e-16 90.1 126 45.2
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 3.5e-16 88.6 124 46.0
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 3.5e-16 88.6 124 46.0
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 1.3e-15 86.7 112 50.0
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.3e-15 86.7 149 40.9
BraA09t38407Z Brassica rapa HOM05D001502 ORTHO05D002950 3.8e-15 85.1 133 45.1
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 6.5e-15 84.3 155 40.0
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 2.7e-13 79.0 124 43.5
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 2.7e-13 79.0 59 61.0
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 3.6e-13 78.6 58 63.8
BcaB01g01656 Brassica carinata HOM05D001502 ORTHO05D002950 6.1e-13 77.8 95 50.5
BcaB01g01657 Brassica carinata HOM05D001502 ORTHO05D002950 6.1e-13 77.8 95 50.5
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 4.0e-12 75.1 56 62.5
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 4.0e-12 75.1 56 62.5
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 8.8e-12 73.9 56 60.7
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 8.8e-12 73.9 56 60.7
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.5e-11 73.2 132 35.6
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.0e-11 72.8 56 58.9
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 2.0e-11 72.8 56 58.9
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 2.0e-11 72.8 56 55.4
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.6e-11 72.4 56 57.1
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 3.4e-11 72.0 154 34.4
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 3.4e-11 72.0 161 34.8
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 3.4e-11 72.0 56 58.9
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 3.4e-11 72.0 56 58.9
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 4.4e-11 71.6 57 57.9
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 4.4e-11 71.6 64 50.0
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 7.5e-11 70.9 59 55.9
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 9.8e-11 70.5 56 57.1
Cc08_g14720 Coffea canephora HOM05D001502 ORTHO05D022407 1.3e-10 70.1 59 55.9
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 1.3e-10 70.1 56 55.4
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 1.3e-10 70.1 56 53.6
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.7e-10 69.7 56 55.4
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.2e-10 69.3 122 36.1
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.2e-10 69.3 149 33.6
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 2.2e-10 69.3 56 55.4
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 2.2e-10 69.3 111 36.9
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 2.2e-10 69.3 63 47.6
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 2.8e-10 68.9 55 54.5
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.8e-10 68.9 56 55.4
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 2.8e-10 68.9 56 57.1
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 2.8e-10 68.9 56 57.1
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 2.8e-10 68.9 56 57.1
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 2.8e-10 68.9 63 49.2
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.7e-10 68.6 56 55.4
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.7e-10 68.6 56 55.4
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.7e-10 68.6 56 55.4
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 4.8e-10 68.2 56 55.4
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 4.8e-10 68.2 56 55.4
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 4.8e-10 68.2 56 55.4
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 6.3e-10 67.8 64 48.4
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 6.3e-10 67.8 61 47.5
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 6.3e-10 67.8 59 54.2
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 8.3e-10 67.4 156 34.0
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 8.3e-10 67.4 73 47.9
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 8.3e-10 67.4 56 51.8
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 8.3e-10 67.4 56 55.4
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 8.3e-10 67.4 56 53.6
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 1.1e-09 67.0 56 55.4
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 1.1e-09 67.0 56 51.8
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 1.1e-09 67.0 56 53.6
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 1.1e-09 67.0 56 55.4
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 1.4e-09 66.6 56 51.8
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 1.4e-09 66.6 56 51.8
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 1.4e-09 66.6 56 53.6
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 1.4e-09 66.6 56 53.6
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 1.8e-09 66.2 56 53.6
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 1.8e-09 66.2 52 59.6
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.8e-09 66.2 56 55.4
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 1.8e-09 66.2 84 41.7
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.8e-09 66.2 56 53.6
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 1.8e-09 66.2 70 44.3
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 1.8e-09 66.2 113 37.2
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 2.4e-09 65.9 156 33.3
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 2.4e-09 65.9 56 51.8
Glyma.01G220100 Glycine max HOM05D001502 ORTHO05D002950 2.4e-09 65.9 112 35.7
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 3.1e-09 65.5 56 50.0
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 3.1e-09 65.5 70 45.7
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 4.1e-09 65.1 54 57.4
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 4.1e-09 65.1 88 40.9
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 4.1e-09 65.1 56 51.8
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 4.1e-09 65.1 112 37.5
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.1e-09 65.1 56 53.6
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 4.1e-09 65.1 56 50.0
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 4.1e-09 65.1 56 50.0
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 5.4e-09 64.7 56 48.2
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 5.4e-09 64.7 56 48.2
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 5.4e-09 64.7 55 54.5
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 7.0e-09 64.3 59 55.9
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 7.0e-09 64.3 56 50.0
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 7.0e-09 64.3 56 51.8
CAN.G774.30 Capsicum annuum HOM05D001502 ORTHO05D002950 7.0e-09 64.3 56 57.1
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 7.0e-09 64.3 56 51.8
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 7.0e-09 64.3 55 54.5
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 7.0e-09 64.3 55 54.5
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 7.0e-09 64.3 62 46.8
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 9.1e-09 63.9 55 54.5
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 9.1e-09 63.9 56 50.0
Zm00001eb341940 Zea mays HOM05D001502 ORTHO05D002950 9.1e-09 63.9 51 51.0
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.2e-08 63.5 60 51.7
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 1.2e-08 63.5 61 54.1
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 1.2e-08 63.5 52 53.8
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 1.6e-08 63.2 131 32.8
Carub.0004s0472 Capsella rubella HOM05D001502 ORTHO05D002950 2.0e-08 62.8 59 50.8
VMungo1215G0294 Vigna mungo HOM05D001502 ORTHO05D002950 2.0e-08 62.8 111 37.8
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.7e-08 62.4 59 50.8
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.5e-08 62.0 55 52.7
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 3.5e-08 62.0 57 49.1
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 3.5e-08 62.0 53 52.8
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 3.5e-08 62.0 64 48.4
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 3.5e-08 62.0 59 49.2
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 4.5e-08 61.6 56 51.8
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 4.5e-08 61.6 55 50.9
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 4.5e-08 61.6 113 35.4
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 4.5e-08 61.6 55 50.9
Lalb_Chr09g0320961 Lupinus albus HOM05D001502 ORTHO05D002950 5.9e-08 61.2 54 53.7
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 7.7e-08 60.8 61 52.5
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 7.7e-08 60.8 55 50.9
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.0e-07 60.5 56 50.0
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 1.3e-07 60.1 66 47.0
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.3e-07 60.1 60 51.7
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 1.7e-07 59.7 55 50.9
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 1.7e-07 59.7 56 46.4
CAN.G774.28 Capsicum annuum HOM05D001502 ORTHO05D002950 1.7e-07 59.7 95 42.1
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.7e-07 59.7 53 49.1
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 2.3e-07 59.3 56 48.2
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 2.3e-07 59.3 55 52.7
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 2.3e-07 59.3 55 52.7
AT3G43990 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 2.9e-07 58.9 82 37.8
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 2.9e-07 58.9 56 48.2
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 3.8e-07 58.5 60 50.0
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 3.8e-07 58.5 56 48.2
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 3.8e-07 58.5 70 42.9
AT2G25120 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 5.0e-07 58.2 59 47.5
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 5.0e-07 58.2 58 53.4
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 5.0e-07 58.2 58 48.3
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 5.0e-07 58.2 58 48.3
VMungo1215G0918 Vigna mungo HOM05D001502 ORTHO05D002950 8.6e-07 57.4 56 44.6
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.1e-06 57.0 56 51.8
Sp4g08640 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.1e-06 57.0 59 45.8
Sp7g21180 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.1e-06 57.0 74 37.8
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 1.1e-06 57.0 61 44.3
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.5e-06 56.6 57 45.6
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 1.9e-06 56.2 57 52.6
SEGI_22710 Sequoiadendron giganteum HOM05D001502 ORTHO05D050933 1.9e-06 56.2 115 33.9
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 2.5e-06 55.8 61 47.5
Glyma.19G131300 Glycine max HOM05D001502 ORTHO05D002950 3.3e-06 55.5 56 44.6
Thhalv10027137m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 4.2e-06 55.1 87 37.9
Thhalv10027372m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 4.2e-06 55.1 87 41.4
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 4.2e-06 55.1 78 35.9
AL4G16290 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 5.5e-06 54.7 59 45.8


User provided reference genes

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