Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p62260 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-46 189.1 90 100.0
BcaC02g07897 Brassica carinata HOM05D000053 ORTHO05D000035 4.9e-42 174.1 82 100.0
A04p25140 Brassica napus HOM05D000053 ORTHO05D000035 1.1e-36 156.4 80 93.8
BcaB06g28618 Brassica carinata HOM05D000053 ORTHO05D000035 1.2e-32 142.9 97 73.2
BcaC02g08104 Brassica carinata HOM05D000053 ORTHO05D000035 2.7e-32 141.7 82 79.3
C04p58340 Brassica napus HOM05D000053 ORTHO05D000035 2.7e-32 141.7 82 79.3
BolC4t27360H Brassica oleracea HOM05D000053 ORTHO05D000035 2.7e-32 141.7 82 79.3
BolC4t27620H Brassica oleracea HOM05D000053 ORTHO05D000035 3.5e-32 141.4 82 84.1
A04p25210 Brassica napus HOM05D000053 ORTHO05D000035 4.6e-32 141.0 82 81.7
BraA04t18023Z Brassica rapa HOM05D000053 ORTHO05D000035 4.6e-32 141.0 82 80.5
BraA04t18021Z Brassica rapa HOM05D000053 ORTHO05D000035 6.0e-32 140.6 82 79.3
C04p62220 Brassica napus HOM05D000053 ORTHO05D000035 1.3e-31 139.4 80 81.2
BraA04t17965Z Brassica rapa HOM05D000053 ORTHO05D000035 1.3e-31 139.4 82 80.5
BraA04t17968Z Brassica rapa HOM05D000053 ORTHO05D000035 3.0e-31 138.3 82 80.5
A04p24480 Brassica napus HOM05D000053 ORTHO05D000035 5.1e-31 137.5 82 79.3
C04p61350 Brassica napus HOM05D000053 ORTHO05D000035 5.1e-31 137.5 82 80.5
C04p61320 Brassica napus HOM05D000053 ORTHO05D000035 6.6e-31 137.1 82 79.3
BcaC02g07824 Brassica carinata HOM05D000053 ORTHO05D000035 1.5e-30 136.0 82 78.0
C04p62890 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-30 136.0 82 78.0
BolC4t27772H Brassica oleracea HOM05D000053 ORTHO05D000035 1.5e-30 136.0 82 78.0
A04p25150 Brassica napus HOM05D000053 ORTHO05D000035 1.9e-30 135.6 82 80.5
A04p25090 Brassica napus HOM05D000053 ORTHO05D000035 3.3e-30 134.8 82 80.5
C04p62180 Brassica napus HOM05D000053 ORTHO05D000035 3.3e-30 134.8 82 80.5
C04p62280 Brassica napus HOM05D000053 ORTHO05D000035 3.3e-30 134.8 81 77.8
BolC4t27696H Brassica oleracea HOM05D000053 ORTHO05D000035 3.3e-30 134.8 82 80.5
BcaB06g28293 Brassica carinata HOM05D000053 ORTHO05D000035 4.3e-30 134.4 82 76.8
BcaB06g28623 Brassica carinata HOM05D000053 ORTHO05D000035 4.3e-30 134.4 81 79.0
BcaB06g28624 Brassica carinata HOM05D000053 ORTHO05D000035 5.6e-30 134.0 80 78.8
BcaC02g07894 Brassica carinata HOM05D000053 ORTHO05D000035 5.6e-30 134.0 82 78.0
BolC4t27701H Brassica oleracea HOM05D000053 ORTHO05D000035 5.6e-30 134.0 82 78.0
BcaC05g26317 Brassica carinata HOM05D000053 ORTHO05D000035 7.3e-30 133.7 82 79.3
A04p19510 Brassica napus HOM05D000053 ORTHO05D000035 7.3e-30 133.7 82 75.6
A04p25220 Brassica napus HOM05D000053 ORTHO05D000035 7.3e-30 133.7 82 78.0
BolC5t31029H Brassica oleracea HOM05D000053 ORTHO05D000035 7.3e-30 133.7 82 79.3
BcaB06g28687 Brassica carinata HOM05D000053 ORTHO05D000035 9.5e-30 133.3 82 78.0
BcaC02g07900 Brassica carinata HOM05D000053 ORTHO05D000035 9.5e-30 133.3 82 79.3
BcaC02g07967 Brassica carinata HOM05D000053 ORTHO05D000035 1.6e-29 132.5 80 78.8
A04p25190 Brassica napus HOM05D000053 ORTHO05D000035 2.1e-29 132.1 82 78.0
BolC4t27847H Brassica oleracea HOM05D000053 ORTHO05D000035 2.8e-29 131.7 82 79.3
BraA04t17545Z Brassica rapa HOM05D000053 ORTHO05D000035 3.6e-29 131.3 82 74.4
BcaB06g28711 Brassica carinata HOM05D000053 ORTHO05D000035 4.7e-29 131.0 83 74.7
BcaB06g28620 Brassica carinata HOM05D000053 ORTHO05D000035 4.0e-28 127.9 84 73.8
C04p55090 Brassica napus HOM05D000053 ORTHO05D000035 5.2e-28 127.5 82 72.0
BolC4t27049H Brassica oleracea HOM05D000053 ORTHO05D000035 5.2e-28 127.5 82 72.0
A04p26390 Brassica napus HOM05D000053 ORTHO05D000035 6.8e-28 127.1 82 76.8
BcaB06g28617 Brassica carinata HOM05D000053 ORTHO05D000035 1.2e-27 126.3 82 74.4
BcaC02g08373 Brassica carinata HOM05D000053 ORTHO05D000035 2.0e-27 125.6 82 72.0
BraA04t18093Z Brassica rapa HOM05D000053 ORTHO05D000035 3.4e-27 124.8 82 72.0
BolC4t27621H Brassica oleracea HOM05D000053 ORTHO05D000035 7.5e-27 123.6 80 71.2
BraA04t17969Z Brassica rapa HOM05D000053 ORTHO05D000035 7.5e-27 123.6 81 72.8
C04p61370 Brassica napus HOM05D000053 ORTHO05D000035 1.3e-26 122.9 80 70.0
BraA04t17970Z Brassica rapa HOM05D000053 ORTHO05D000035 3.7e-26 121.3 80 68.8
BraA04t18143Z Brassica rapa HOM05D000053 ORTHO05D000035 4.9e-26 120.9 85 70.6
AL3G40700 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 7.8e-24 113.6 82 67.1
AT3G25020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.7e-23 112.5 82 65.9
Sp4g15020 Schrenkiella parvula HOM05D000053 ORTHO05D000035 3.3e-22 108.2 86 62.8
AL3G41940 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 4.3e-22 107.8 82 63.4
AT3G24982 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 5.6e-22 107.5 82 63.4
Carub.0004s1403 Capsella rubella HOM05D000053 ORTHO05D000035 4.7e-21 104.4 80 62.5
Carub.0003s2530 Capsella rubella HOM05D000053 ORTHO05D000035 1.8e-20 102.4 82 58.5
CARHR126570 Cardamine hirsuta HOM05D000053 ORTHO05D000035 2.4e-20 102.1 85 60.0
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.1e-20 101.7 82 59.8
Carub.0003s2531 Capsella rubella HOM05D000053 ORTHO05D000035 3.1e-20 101.7 82 59.8
AL3G40650 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 5.2e-20 100.9 82 63.4
Carub.0003s2529 Capsella rubella HOM05D000053 ORTHO05D000035 5.2e-20 100.9 82 59.8
AL3G40730 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 6.8e-20 100.5 82 63.4
AT2G32680 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 8.9e-20 100.1 80 61.2
Carub.0003s2533 Capsella rubella HOM05D000053 ORTHO05D000035 8.9e-20 100.1 80 58.8
A04p25130 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-19 99.4 80 66.2
C05p23310 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-19 99.4 53 83.0
Carub.0003s2534 Capsella rubella HOM05D000053 ORTHO05D000035 4.4e-19 97.8 80 56.2
CARHR116010 Cardamine hirsuta HOM05D000053 ORTHO05D000035 4.4e-19 97.8 84 58.3
Carub.0003s2532 Capsella rubella HOM05D000053 ORTHO05D000035 5.8e-19 97.4 80 56.2
AT2G33020 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 7.6e-19 97.1 80 60.0
BcaB02g10489 Brassica carinata HOM05D000053 ORTHO05D000035 9.9e-19 96.7 82 62.2
BolC4t23253H Brassica oleracea HOM05D000053 ORTHO05D000035 9.9e-19 96.7 83 61.4
Carub.0148s0001 Capsella rubella HOM05D000053 ORTHO05D000035 9.9e-19 96.7 80 56.2
AL4G16860 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 1.7e-18 95.9 81 59.3
BcaB02g10517 Brassica carinata HOM05D000053 ORTHO05D000035 1.7e-18 95.9 82 57.3
CARHR262160 Cardamine hirsuta HOM05D000053 ORTHO05D000035 2.2e-18 95.5 82 58.5
BolC4t23198H Brassica oleracea HOM05D000053 ORTHO05D000035 3.8e-18 94.7 80 60.0
AT3G24900 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 4.9e-18 94.4 83 59.0
A05p12920 Brassica napus HOM05D000053 ORTHO05D000035 4.9e-18 94.4 76 63.2
Sp4g15410 Schrenkiella parvula HOM05D000053 ORTHO05D000035 8.4e-18 93.6 82 59.8
AT2G33080 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 2.4e-17 92.0 84 58.3
CARHR175550 Cardamine hirsuta HOM05D000053 ORTHO05D000035 2.4e-17 92.0 75 61.3
Thhalv10022855m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 3.2e-17 91.7 74 64.9
BcaB02g10521 Brassica carinata HOM05D000053 ORTHO05D000035 4.2e-17 91.3 88 58.0
A03p18240 Brassica napus HOM05D000053 ORTHO05D000035 4.2e-17 91.3 82 58.5
BraA03t11084Z Brassica rapa HOM05D000053 ORTHO05D000035 4.2e-17 91.3 82 58.5
BcaB01g03968 Brassica carinata HOM05D000053 ORTHO05D000035 2.1e-16 89.0 86 52.3
BcaC01g05898 Brassica carinata HOM05D000053 ORTHO05D000035 2.1e-16 89.0 82 57.3
BolC3t14510H Brassica oleracea HOM05D000053 ORTHO05D000035 2.7e-16 88.6 82 56.1
Carub.0004s1404 Capsella rubella HOM05D000053 ORTHO05D000035 3.5e-16 88.2 80 57.5
BraA05t20232Z Brassica rapa HOM05D000053 ORTHO05D000035 4.6e-16 87.8 76 57.9
BcaC02g11370 Brassica carinata HOM05D000053 ORTHO05D000035 1.0e-15 86.7 80 56.2
C04p16490 Brassica napus HOM05D000053 ORTHO05D000035 1.0e-15 86.7 80 56.2
Sp4g15360 Schrenkiella parvula HOM05D000053 ORTHO05D000035 1.3e-15 86.3 82 53.7
AT2G25440 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 2.3e-15 85.5 75 57.3
A05p12560 Brassica napus HOM05D000053 ORTHO05D000035 2.3e-15 85.5 88 54.5
A05p12610 Brassica napus HOM05D000053 ORTHO05D000035 2.3e-15 85.5 82 51.2
C03p21290 Brassica napus HOM05D000053 ORTHO05D000035 2.3e-15 85.5 82 56.1
BraA05t20198Z Brassica rapa HOM05D000053 ORTHO05D000035 2.3e-15 85.5 74 54.1
Sp4g14900 Schrenkiella parvula HOM05D000053 ORTHO05D000035 5.1e-15 84.3 86 51.2
BolC4t27686H Brassica oleracea HOM05D000053 ORTHO05D000035 6.6e-15 84.0 86 52.3
CARHR126990 Cardamine hirsuta HOM05D000053 ORTHO05D000035 6.6e-15 84.0 80 56.2
BcaC02g07910 Brassica carinata HOM05D000053 ORTHO05D000035 8.7e-15 83.6 86 52.3
AL199U10010 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 1.1e-14 83.2 82 56.1
C04p16430 Brassica napus HOM05D000053 ORTHO05D000035 1.1e-14 83.2 85 54.1
Thhalv10010006m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 1.1e-14 83.2 80 52.5
CARHR127040 Cardamine hirsuta HOM05D000053 ORTHO05D000035 1.5e-14 82.8 81 56.8
C04p62570 Brassica napus HOM05D000053 ORTHO05D000035 2.5e-14 82.0 80 50.0
BolC4t27738H Brassica oleracea HOM05D000053 ORTHO05D000035 2.5e-14 82.0 80 50.0
BcaC02g07862 Brassica carinata HOM05D000053 ORTHO05D000035 3.3e-14 81.6 76 51.3
Carub.0003s2713 Capsella rubella HOM05D000053 ORTHO05D000035 4.3e-14 81.3 82 51.2
Sp4g15390 Schrenkiella parvula HOM05D000053 ORTHO05D000035 7.3e-14 80.5 81 55.6
BraA04t18013Z Brassica rapa HOM05D000053 ORTHO05D000035 9.6e-14 80.1 84 51.2
CARHR127090 Cardamine hirsuta HOM05D000053 ORTHO05D000035 9.6e-14 80.1 79 51.9
A04p25020 Brassica napus HOM05D000053 ORTHO05D000035 2.1e-13 79.0 79 51.9
AL7G37050 Arabidopsis lyrata HOM05D000053 ORTHO05D001365 3.6e-13 78.2 70 54.3
CARHR127060 Cardamine hirsuta HOM05D000053 ORTHO05D000035 3.6e-13 78.2 79 54.4
Aa31sc351G50 Aethionema arabicum HOM05D000053 ORTHO05D000035 4.7e-13 77.8 76 56.6
BcaB06g28673 Brassica carinata HOM05D000053 ORTHO05D000035 4.7e-13 77.8 77 54.5
Thhalv10016266m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 4.7e-13 77.8 78 51.3
BcaC02g11379 Brassica carinata HOM05D000053 ORTHO05D000035 6.2e-13 77.4 85 51.8
A04p25610 Brassica napus HOM05D000053 ORTHO05D000035 6.2e-13 77.4 77 51.9
C04p16310 Brassica napus HOM05D000053 ORTHO05D000035 6.2e-13 77.4 85 51.8
C04p55080 Brassica napus HOM05D000053 ORTHO05D000035 6.2e-13 77.4 42 83.3
BolC4t27048H Brassica oleracea HOM05D000053 ORTHO05D000035 6.2e-13 77.4 42 83.3
BraA04t18065Z Brassica rapa HOM05D000053 ORTHO05D000035 6.2e-13 77.4 77 51.9
CARHR253920 Cardamine hirsuta HOM05D000053 ORTHO05D000035 8.1e-13 77.0 76 53.9
BcaB01g04059 Brassica carinata HOM05D000053 ORTHO05D000035 1.1e-12 76.6 70 47.1
CARHR126770 Cardamine hirsuta HOM05D000053 ORTHO05D000035 1.4e-12 76.3 81 49.4
AT2G33050 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 3.1e-12 75.1 75 56.0
BcaC01g05862 Brassica carinata HOM05D000053 ORTHO05D000035 6.9e-12 73.9 77 44.2
Thhalv10016279m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 1.5e-11 72.8 73 50.7
CARHR126970 Cardamine hirsuta HOM05D000053 ORTHO05D000035 2.6e-11 72.0 81 49.4
Thhalv10016223m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 2.6e-11 72.0 83 50.6
AL4G28950 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 3.4e-11 71.6 77 51.9
Aa31LG5G4190 Aethionema arabicum HOM05D000053 ORTHO05D000035 4.4e-11 71.2 76 52.6
A05p12570 Brassica napus HOM05D000053 ORTHO05D000035 4.4e-11 71.2 80 48.8
BraA05t20194Z Brassica rapa HOM05D000053 ORTHO05D000035 4.4e-11 71.2 80 48.8
BraA05t20190Z Brassica rapa HOM05D000053 ORTHO05D000035 5.8e-11 70.9 80 50.0
CARHR127010 Cardamine hirsuta HOM05D000053 ORTHO05D000035 7.6e-11 70.5 48 64.6
BcaC02g11377 Brassica carinata HOM05D000053 ORTHO05D000035 9.9e-11 70.1 80 47.5
C04p16440 Brassica napus HOM05D000053 ORTHO05D000035 9.9e-11 70.1 80 47.5
BolC4t23188H Brassica oleracea HOM05D000053 ORTHO05D000035 9.9e-11 70.1 80 50.0
AT2G33060 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 1.3e-10 69.7 70 54.3
C04p16250 Brassica napus HOM05D000053 ORTHO05D000035 1.3e-10 69.7 77 50.6
Thhalv10016267m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 2.2e-10 68.9 77 51.9
Sp4g15400 Schrenkiella parvula HOM05D000053 ORTHO05D000035 2.2e-10 68.9 80 50.0
A05p12520 Brassica napus HOM05D000053 ORTHO05D000035 3.8e-10 68.2 80 48.8
C04p16410 Brassica napus HOM05D000053 ORTHO05D000035 3.8e-10 68.2 71 50.7
BcaB02g10522 Brassica carinata HOM05D000053 ORTHO05D000035 4.9e-10 67.8 80 50.0
C04p16160 Brassica napus HOM05D000053 ORTHO05D000035 4.9e-10 67.8 65 52.3
AL4G28600 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 1.9e-09 65.9 76 48.7
A05p12540 Brassica napus HOM05D000053 ORTHO05D000035 1.9e-09 65.9 77 50.6
C04p16190 Brassica napus HOM05D000053 ORTHO05D000035 1.9e-09 65.9 65 50.8
C04p16210 Brassica napus HOM05D000053 ORTHO05D000035 1.9e-09 65.9 65 50.8
BraA05t20192Z Brassica rapa HOM05D000053 ORTHO05D000035 1.9e-09 65.9 44 65.9
AL4G28610 Arabidopsis lyrata HOM05D000053 ORTHO05D000035 3.2e-09 65.1 70 48.6
Carub.0004s1453 Capsella rubella HOM05D000053 ORTHO05D000035 3.2e-09 65.1 71 50.7
C04p16980 Brassica napus HOM05D000053 ORTHO05D000035 5.4e-09 64.3 61 54.1
BcaC02g11380 Brassica carinata HOM05D000053 ORTHO05D000035 7.1e-09 63.9 62 53.2
C04p16350 Brassica napus HOM05D000053 ORTHO05D000035 7.1e-09 63.9 62 53.2
BcaC01g05885 Brassica carinata HOM05D000053 ORTHO05D000035 9.3e-09 63.5 77 48.1
BcaC02g11349 Brassica carinata HOM05D000053 ORTHO05D000035 9.3e-09 63.5 80 46.2
C03p21440 Brassica napus HOM05D000053 ORTHO05D000035 9.3e-09 63.5 77 48.1
C04p16280 Brassica napus HOM05D000053 ORTHO05D000035 1.2e-08 63.2 44 63.6
BolC3t14528H Brassica oleracea HOM05D000053 ORTHO05D000035 1.2e-08 63.2 77 48.1
BolC4t23193H Brassica oleracea HOM05D011050 ORTHO05D013523 1.6e-08 62.8 48 58.3
C04p15820 Brassica napus HOM05D000053 ORTHO05D000035 2.1e-08 62.4 78 44.9
BolC4t23151H Brassica oleracea HOM05D000053 ORTHO05D000035 2.1e-08 62.4 78 44.9
A03p18370 Brassica napus HOM05D000053 ORTHO05D000035 2.7e-08 62.0 77 46.8
BraA03t11100Z Brassica rapa HOM05D000053 ORTHO05D000035 2.7e-08 62.0 77 46.8
BcaB01g03936 Brassica carinata HOM05D000053 ORTHO05D000035 3.5e-08 61.6 54 50.0
A04p25170 Brassica napus HOM05D000053 ORTHO05D000035 3.5e-08 61.6 34 79.4
BolC4t23191H Brassica oleracea HOM05D000053 ORTHO05D000035 3.5e-08 61.6 75 45.3
C04p16230 Brassica napus HOM05D000053 ORTHO05D000035 4.6e-08 61.2 45 60.0
BolC3t14550H Brassica oleracea HOM05D000053 ORTHO05D000035 4.6e-08 61.2 77 46.8
BcaB02g10542 Brassica carinata HOM05D000053 ORTHO05D000035 1.0e-07 60.1 78 44.9
CARHR127080 Cardamine hirsuta HOM05D000053 ORTHO05D000035 1.7e-07 59.3 45 60.0
BcaC02g11415 Brassica carinata HOM05D000053 ORTHO05D000035 2.3e-07 58.9 78 43.6
BcaC01g05860 Brassica carinata HOM05D000053 ORTHO05D000035 3.0e-07 58.5 44 59.1
C03p21660 Brassica napus HOM05D000053 ORTHO05D000035 3.0e-07 58.5 44 59.1
A05p12240 Brassica napus HOM05D000053 ORTHO05D000035 1.5e-06 56.2 70 41.4
Thhalv10016291m.g Eutrema salsugineum HOM05D000053 ORTHO05D000035 4.3e-06 54.7 86 45.3
BcaB02g10524 Brassica carinata HOM05D000053 ORTHO05D000035 7.3e-06 53.9 45 57.8


User provided reference genes

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