Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 6.8e-43 176.8 82 100.0
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 6.8e-43 176.8 82 100.0
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.6e-42 174.9 82 98.8
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.6e-42 174.9 82 98.8
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.0e-38 162.9 78 93.6
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.8e-36 154.8 77 89.6
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 6.2e-36 153.7 77 89.6
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.4e-35 152.5 74 90.5
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 1.4e-35 152.5 74 90.5
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.4e-35 152.5 74 90.5
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.4e-35 152.5 74 90.5
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.8e-35 152.1 74 91.9
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.8e-35 152.1 74 91.9
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.8e-35 152.1 76 86.8
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 1.8e-35 152.1 74 91.9
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.8e-35 152.1 74 89.2
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.4e-35 151.8 74 90.5
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 90.5
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 89.2
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.1e-35 151.4 74 89.2
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 4.0e-35 151.0 74 89.2
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 4.0e-35 151.0 76 86.8
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 5.3e-35 150.6 74 90.5
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 6.9e-35 150.2 74 89.2
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 87.8
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 87.8
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 87.8
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 89.2
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 89.2
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 89.2
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 89.2
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 89.2
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 9.0e-35 149.8 74 87.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.2e-34 149.4 74 87.8
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.2e-34 149.4 74 89.2
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 1.2e-34 149.4 74 89.2
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.2e-34 149.4 74 87.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 89.2
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.5e-34 149.1 74 87.8
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 86.5
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.0e-34 148.7 74 87.8
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.6e-34 148.3 78 83.3
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 86.5
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.6e-34 148.3 74 87.8
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 3.4e-34 147.9 74 87.8
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 3.4e-34 147.9 74 86.5
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.4e-34 147.9 74 87.8
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.4e-34 147.9 74 87.8
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.4e-34 147.9 74 87.8
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.4e-34 147.9 74 87.8
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 4.4e-34 147.5 74 86.5
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 4.4e-34 147.5 74 86.5
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 4.4e-34 147.5 74 87.8
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 86.5
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 86.5
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 86.5
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 87.8
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 85.1
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.8e-34 147.1 74 87.8
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 7.6e-34 146.7 74 87.8
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 7.6e-34 146.7 74 87.8
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.6e-34 146.7 74 86.5
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 7.6e-34 146.7 74 87.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.6e-34 146.7 74 87.8
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 9.9e-34 146.4 76 82.9
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 9.9e-34 146.4 76 82.9
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.3e-33 146.0 74 85.1
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 86.5
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 86.5
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 86.5
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 86.5
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.7e-33 145.6 78 84.6
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 86.5
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 2.2e-33 145.2 74 86.5
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 2.2e-33 145.2 76 84.2
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.9e-33 144.8 74 85.1
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.9e-33 144.8 74 86.5
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.9e-33 144.8 74 86.5
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 2.9e-33 144.8 74 86.5
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 3.8e-33 144.4 74 86.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 4.9e-33 144.1 74 85.1
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 4.9e-33 144.1 74 85.1
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 4.9e-33 144.1 74 86.5
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 6.4e-33 143.7 74 85.1
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 6.4e-33 143.7 74 85.1
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 6.4e-33 143.7 74 85.1
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.4e-33 143.7 69 91.3
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 8.4e-33 143.3 74 85.1
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.4e-32 142.5 80 81.2
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.4e-32 142.5 74 85.1
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.4e-32 142.5 77 80.5
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 9.3e-32 139.8 74 79.7
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.2e-31 139.4 75 81.3
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 3.5e-31 137.9 74 85.1
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 7.8e-31 136.7 84 76.2
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 7.8e-31 136.7 90 72.2
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 6.6e-30 133.7 76 76.3
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 1.3e-28 129.4 70 77.1
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 2.1e-28 128.6 68 77.9
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.1e-27 124.8 87 67.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.2e-26 122.9 68 76.5
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.8e-26 120.6 74 78.4
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 8.4e-25 116.7 57 89.5
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 8.4e-25 116.7 56 91.1
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 9.3e-24 113.2 57 87.7
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 7.9e-23 110.2 57 80.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.3e-22 109.4 59 83.1
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 3.7e-20 101.3 75 62.7
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.6e-18 95.1 55 78.2
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 2.6e-18 95.1 47 87.2
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 2.6e-18 95.1 47 87.2
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 5.8e-18 94.0 48 85.4
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.1e-15 85.5 43 83.7
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 5.1e-14 80.9 44 77.3
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 7.4e-13 77.0 46 69.6
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.1e-12 75.5 37 86.5
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-11 73.2 39 79.5
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.4e-11 72.0 37 83.8
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.1e-11 71.6 47 70.2
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 4.0e-11 71.2 52 63.5
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 4.0e-11 71.2 74 48.6
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 6.9e-11 70.5 53 62.3
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.5e-10 67.8 38 78.9
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.9e-09 65.1 38 76.3
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.9e-08 62.4 51 54.9
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.2e-08 61.6 38 71.1
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.2e-08 61.6 29 86.2
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.6e-07 57.8 39 69.2


User provided reference genes

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