Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p53230 Brassica napus HOM05D000454 ORTHO05D002637 1.0e-168 596.7 299 100.0
BolC4t26879H Brassica oleracea HOM05D000454 ORTHO05D002637 2.6e-156 555.4 299 94.6
C04p53320 Brassica napus HOM05D000359 ORTHO05D002637 1.6e-110 403.3 211 96.2
BcaC02g08534 Brassica carinata HOM05D000454 ORTHO05D002637 2.7e-73 279.6 273 60.1
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 1.0e-51 208.0 294 45.2
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 1.0e-51 208.0 309 45.0
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 6.6e-51 205.3 281 47.7
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 2.5e-50 203.4 308 44.5
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 2.5e-50 203.4 308 44.5
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 2.5e-50 203.4 308 44.5
A04p18210 Brassica napus HOM05D000626 ORTHO05D000824 7.5e-47 191.8 167 64.7
Carub.0001s0976 Capsella rubella HOM05D000454 ORTHO05D002637 1.3e-43 181.0 309 40.1
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 6.1e-41 172.2 306 38.6
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 2.0e-39 167.2 310 37.7
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.5e-39 165.2 310 37.4
C08p13640 Brassica napus HOM05D000454 ORTHO05D002637 7.5e-39 165.2 310 37.7
BolC8t49002H Brassica oleracea HOM05D000454 ORTHO05D002637 7.5e-39 165.2 310 37.7
BcaB06g27937 Brassica carinata HOM05D000454 ORTHO05D002637 2.9e-38 163.3 309 40.1
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 1.9e-37 160.6 310 36.8
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 1.9e-37 160.6 310 36.8
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 3.2e-37 159.8 310 35.8
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 3.2e-37 159.8 310 37.4
BolC4t26874H Brassica oleracea HOM05D020930 ORTHO05D002637 1.2e-36 157.9 258 42.6
Sp1g08940 Schrenkiella parvula HOM05D000454 ORTHO05D002637 1.2e-36 157.9 309 36.6
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.9e-34 150.6 194 47.9
AL4G15180 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 2.5e-34 150.2 221 43.4
Carub.0001s4235 Capsella rubella HOM05D000454 ORTHO05D002637 4.7e-33 146.0 310 33.9
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 6.2e-33 145.6 313 36.4
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 2.6e-31 140.2 95 73.7
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 2.6e-31 140.2 95 73.7
BcaNung05171 Brassica carinata HOM05D000454 ORTHO05D002637 2.3e-27 127.1 221 42.5
BcaC02g08540 Brassica carinata HOM05D020930 ORTHO05D002637 8.1e-25 118.6 149 47.7
C04p53180 Brassica napus HOM05D020930 ORTHO05D002637 8.1e-25 118.6 149 47.7
BolC4t26887H Brassica oleracea HOM05D020930 ORTHO05D002637 3.2e-21 106.7 55 94.5
CARHR268020 Cardamine hirsuta HOM05D000454 ORTHO05D002637 2.3e-19 100.5 251 31.5
CARHR268030 Cardamine hirsuta HOM05D000454 ORTHO05D002637 8.6e-19 98.6 251 30.3
BraA04t17434Z Brassica rapa HOM05D000626 ORTHO05D000824 2.4e-16 90.5 56 80.4
AT1G34050 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 6.8e-16 89.0 104 50.0
Carub.0001s3214 Capsella rubella HOM05D000454 ORTHO05D002637 8.9e-16 88.6 88 55.7
Carub.0008s1496 Capsella rubella HOM05D000454 ORTHO05D002637 9.9e-15 85.1 109 41.3
A03p14470 Brassica napus HOM05D000454 ORTHO05D002637 2.2e-14 84.0 123 42.3
A03p14460 Brassica napus HOM05D000454 ORTHO05D002637 2.9e-14 83.6 87 52.9
BolC3t14102H Brassica oleracea HOM05D000454 ORTHO05D002637 3.8e-14 83.2 87 51.7
Sp6g16660 Schrenkiella parvula HOM05D000454 ORTHO05D002637 3.8e-14 83.2 87 54.0
AT5G50140 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 6.4e-14 82.4 87 50.6
CARHR180050 Cardamine hirsuta HOM05D000454 ORTHO05D002637 8.4e-14 82.0 89 51.7
BraA03t10742Z Brassica rapa HOM05D000454 ORTHO05D002637 1.1e-13 81.6 87 50.6
C03p16880 Brassica napus HOM05D000454 ORTHO05D002637 1.4e-13 81.3 87 49.4
C03p16890 Brassica napus HOM05D000454 ORTHO05D002637 1.4e-13 81.3 87 49.4
C04p53380 Brassica napus HOM05D000626 ORTHO05D000824 1.4e-13 81.3 46 82.6
BcaC01g06320 Brassica carinata HOM05D000454 ORTHO05D002637 2.4e-13 80.5 87 50.6
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 2.1e-12 77.4 98 45.9
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 6.6e-11 72.4 89 44.9
AT5G54700 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 8.7e-11 72.0 87 44.8
Thhalv10015398m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 1.9e-10 70.9 89 48.3
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 5.6e-10 69.3 102 40.2
AT1G34046 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.3e-10 68.9 73 52.1
CARHR268010 Cardamine hirsuta HOM05D000454 ORTHO05D002637 8.1e-09 65.5 84 44.0
BcaC01g06321 Brassica carinata HOM05D000454 ORTHO05D002637 2.4e-08 63.9 71 49.3
BcaC02g08541 Brassica carinata HOM05D000454 ORTHO05D002637 5.3e-08 62.8 45 71.1
C04p53170 Brassica napus HOM05D000454 ORTHO05D002637 5.3e-08 62.8 45 71.1
COL.COLO4_30483 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.2e-07 61.6 84 39.3
Thhalv10015255m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 1.2e-07 61.6 87 43.7
Cc01_g07190 Coffea canephora HOM05D000480 ORTHO05D000313 3.4e-07 60.1 113 35.4
Prupe.3G062300 Prunus persica HOM05D000454 ORTHO05D002637 3.4e-07 60.1 96 36.5
Cfa010029 Carpinus fangiana HOM05D000480 ORTHO05D000313 4.4e-07 59.7 90 41.1
PGR031G3290 Punica granatum HOM05D000480 ORTHO05D000313 5.8e-07 59.3 118 32.2
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 7.6e-07 58.9 85 35.3
Ca_26580_v3 Cicer arietinum L. HOM05D000480 ORTHO05D000313 7.6e-07 58.9 88 37.5
MD04G1235200 Malus domestica HOM05D000480 ORTHO05D000313 7.6e-07 58.9 98 33.7
BraA04t17433Z Brassica rapa HOM05D020930 ORTHO05D002637 1.3e-06 58.2 147 32.0
CiPaw.11G073600 Carya illinoinensis HOM05D000480 ORTHO05D000313 1.3e-06 58.2 99 35.4
AUR62044581 Chenopodium quinoa HOM05D000480 ORTHO05D000313 1.7e-06 57.8 102 33.3
AUR62044582 Chenopodium quinoa HOM05D000480 ORTHO05D000313 1.7e-06 57.8 102 33.3
Manes.09G064600 Manihot esculenta HOM05D000480 ORTHO05D000313 2.9e-06 57.0 89 40.4
Thecc.10G056400 Theobroma cacao HOM05D000480 ORTHO05D000313 2.9e-06 57.0 83 38.6
Carub.0005s0574 Capsella rubella HOM05D000454 ORTHO05D002637 4.9e-06 56.2 87 40.2
Haze_08387 Corylus avellana HOM05D000480 ORTHO05D000313 4.9e-06 56.2 89 36.0
Sc12g0002980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 4.9e-06 56.2 85 38.8
THA.LOC104820697 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 4.9e-06 56.2 82 37.8
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 6.4e-06 55.8 70 41.4
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 6.4e-06 55.8 71 42.3
TAR374G0158 Trochodendron aralioides HOM05D000480 ORTHO05D000313 6.4e-06 55.8 79 38.0
Atru.chr11.181 Acer truncatum HOM05D000480 ORTHO05D000313 8.4e-06 55.5 82 36.6
Cc00_g18020 Coffea canephora HOM05D000480 ORTHO05D000313 8.4e-06 55.5 133 33.1
Dinv02176 Davidia involucrata HOM05D000264 ORTHO05D000152 8.4e-06 55.5 88 31.8


User provided reference genes

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