Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08540 Brassica carinata HOM05D020930 ORTHO05D002637 3.3e-141 505.0 249 100.0
C04p53180 Brassica napus HOM05D020930 ORTHO05D002637 3.3e-141 505.0 249 100.0
BolC4t26874H Brassica oleracea HOM05D020930 ORTHO05D002637 4.1e-75 285.4 147 98.0
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 1.1e-40 171.0 148 64.2
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 1.1e-40 171.0 148 64.2
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 1.1e-40 171.0 148 64.2
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 1.1e-40 171.0 148 64.2
BraA04t17433Z Brassica rapa HOM05D020930 ORTHO05D002637 1.3e-39 167.5 144 64.6
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 4.6e-34 149.1 145 59.3
Carub.0001s0976 Capsella rubella HOM05D000454 ORTHO05D002637 3.4e-29 132.9 144 51.4
C08p13640 Brassica napus HOM05D000454 ORTHO05D002637 2.3e-25 120.2 145 49.7
BolC8t49002H Brassica oleracea HOM05D000454 ORTHO05D002637 2.3e-25 120.2 145 49.7
C04p53230 Brassica napus HOM05D000454 ORTHO05D002637 1.1e-24 117.9 149 47.7
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 2.0e-24 117.1 142 48.6
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 2.0e-24 117.1 142 48.6
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 5.7e-24 115.5 142 47.9
Carub.0001s4235 Capsella rubella HOM05D000454 ORTHO05D002637 1.8e-22 110.5 145 49.7
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 7.0e-22 108.6 152 46.1
Sp1g08940 Schrenkiella parvula HOM05D000454 ORTHO05D002637 7.0e-22 108.6 143 46.9
BcaB06g27937 Brassica carinata HOM05D000454 ORTHO05D002637 1.5e-21 107.5 143 44.8
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 2.0e-21 107.1 145 47.6
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 2.0e-21 107.1 145 46.9
C08p13590 Brassica napus HOM05D020930 ORTHO05D002637 2.0e-21 107.1 145 46.9
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 2.6e-21 106.7 144 48.6
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 4.5e-21 105.9 145 47.6
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 7.7e-21 105.1 145 46.9
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 8.5e-20 101.7 146 45.9
BolC4t26887H Brassica oleracea HOM05D020930 ORTHO05D002637 2.3e-17 93.6 115 50.4
BolC4t26879H Brassica oleracea HOM05D000454 ORTHO05D002637 1.7e-15 87.4 155 40.6
BcaNung05171 Brassica carinata HOM05D000454 ORTHO05D002637 7.0e-14 82.0 103 48.5
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.0e-12 78.2 127 43.3
RcHm_v2.0_Chr2g0140011 Rosa chinensis HOM05D000454 ORTHO05D002637 2.1e-10 70.5 144 31.9
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 2.0e-08 63.9 99 42.4
CARHR268020 Cardamine hirsuta HOM05D000454 ORTHO05D002637 2.6e-08 63.5 94 39.4
Prupe.3G135100 Prunus persica HOM05D000264 ORTHO05D000152 3.3e-08 63.2 103 35.9
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 4.4e-08 62.8 130 30.0
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 5.7e-08 62.4 130 30.0
CSS0040861 Camellia sinensis var. sinensis HOM05D000264 ORTHO05D000152 9.7e-08 61.6 136 31.6
Prupe.3G153800 Prunus persica HOM05D000264 ORTHO05D000152 9.7e-08 61.6 79 38.0
Dinv14086 Davidia involucrata HOM05D000096 ORTHO05D000045 1.3e-07 61.2 77 42.9
Dinv29924 Davidia involucrata HOM05D000264 ORTHO05D000152 1.3e-07 61.2 77 42.9
QL03p028301 Quercus lobata HOM05D000264 ORTHO05D000152 1.3e-07 61.2 71 39.4
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 1.3e-07 61.2 67 40.3
AT5G50140 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.7e-07 60.8 118 34.7
BcaC01g06320 Brassica carinata HOM05D000454 ORTHO05D002637 1.7e-07 60.8 124 37.1
Prupe.3G135200 Prunus persica HOM05D000264 ORTHO05D000152 1.7e-07 60.8 82 37.8
Sc06g0005980 Simmondsia chinensis HOM05D000264 ORTHO05D000152 1.7e-07 60.8 135 25.9
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 2.2e-07 60.5 100 38.0
Actinidia11042 Actinidia chinensis HOM05D000264 ORTHO05D000152 2.8e-07 60.1 206 26.7
AL4G15180 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 2.8e-07 60.1 56 57.1
Nitab4.5_0007588g0010 Nicotiana tabacum HOM05D000480 ORTHO05D000313 2.8e-07 60.1 152 30.9
Thhalv10015255m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 3.7e-07 59.7 120 35.0
Duzib177G0874 Durio zibethinus HOM05D000264 ORTHO05D000152 6.3e-07 58.9 96 34.4
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 6.3e-07 58.9 85 36.5
Ah.01g022540 Amaranthus hybridus HOM05D000264 ORTHO05D000152 8.2e-07 58.5 105 34.3
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 8.2e-07 58.5 134 29.9
Cpa.g.sc56.53 Carica papaya HOM05D000454 ORTHO05D002637 1.4e-06 57.8 71 45.1
Lsat_1_v5_gn_0_25361 Lactuca sativa HOM05D000097 ORTHO05D000041 1.4e-06 57.8 120 31.7
QL03p027958 Quercus lobata HOM05D000264 ORTHO05D000152 1.4e-06 57.8 62 40.3
Actinidia11041 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.8e-06 57.4 99 36.4
Manes.09G150800 Manihot esculenta HOM05D000264 ORTHO05D000152 1.8e-06 57.4 90 33.3
EL10Ac6g14901 Beta vulgaris HOM05D000264 ORTHO05D000152 2.4e-06 57.0 125 28.0
EL10Ac6g14903 Beta vulgaris HOM05D000264 ORTHO05D000152 2.4e-06 57.0 135 24.4
QL03p016466 Quercus lobata HOM05D000264 ORTHO05D000152 3.1e-06 56.6 92 32.6
RcHm_v2.0_Chr2g0139931 Rosa chinensis HOM05D000454 ORTHO05D002637 3.1e-06 56.6 117 34.2
Aqoxy1G04212 Aquilegia oxysepala HOM05D000264 ORTHO05D000152 4.1e-06 56.2 97 35.1
CiPaw.08G151700 Carya illinoinensis HOM05D000097 ORTHO05D000041 4.1e-06 56.2 88 37.5
Glyma.06G293900 Glycine max HOM05D000264 ORTHO05D000152 4.1e-06 56.2 94 33.0
BraA03t10741Z Brassica rapa HOM05D000454 ORTHO05D002637 5.3e-06 55.8 160 31.9
Gorai.012G179900 Gossypium raimondii HOM05D000264 ORTHO05D000152 5.3e-06 55.8 133 27.1
Atru.chr7.1358 Acer truncatum HOM05D003621 ORTHO05D004259 7.0e-06 55.5 110 34.5
C03p16880 Brassica napus HOM05D000454 ORTHO05D002637 7.0e-06 55.5 127 34.6
Migut.J01155 Erythranthe guttata HOM05D003621 ORTHO05D004259 7.0e-06 55.5 125 31.2
Gorai.012G179800 Gossypium raimondii HOM05D000264 ORTHO05D000152 7.0e-06 55.5 110 29.1
QL03p027806 Quercus lobata HOM05D000264 ORTHO05D000152 7.0e-06 55.5 83 37.3
Medtr5g085480 Medicago truncatula HOM05D000264 ORTHO05D000152 9.1e-06 55.1 54 44.4


User provided reference genes

Program Settings