Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-104 383.3 195 100.0
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 1.5e-91 339.7 180 95.0
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-75 287.0 182 78.0
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 2.5e-75 285.8 180 78.3
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 7.2e-75 284.3 180 77.8
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 7.2e-75 284.3 180 77.8
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 2.6e-72 275.8 184 73.9
BolC4t26475H Brassica oleracea HOM05D008309 ORTHO05D010308 9.8e-72 273.9 180 80.6
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 1.3e-71 273.5 182 75.8
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 4.1e-70 268.5 143 95.8
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 7.3e-67 257.7 164 78.0
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 7.3e-67 257.7 182 73.1
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 7.5e-64 247.7 169 75.1
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 1.8e-62 243.0 181 68.0
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 7.0e-62 241.1 183 67.8
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 2.7e-61 239.2 184 69.6
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 2.2e-55 219.5 169 68.6
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 2.9e-55 219.2 146 74.7
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 2.3e-52 209.5 138 76.1
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 1.1e-51 207.2 138 75.4
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 2.8e-50 202.6 106 93.4
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 3.5e-37 159.1 170 48.8
BolC7t46146H Brassica oleracea HOM05D008309 ORTHO05D010308 3.3e-35 152.5 131 63.4
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 4.3e-35 152.1 149 56.4
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 5.8e-32 141.7 86 80.2
C07p56660 Brassica napus HOM05D008309 ORTHO05D010308 4.9e-31 138.7 129 61.2
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 1.6e-29 133.7 85 76.5
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 4.6e-29 132.1 85 76.5
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 7.8e-29 131.3 123 56.1
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 6.2e-26 121.7 131 50.4
BolC4t25321H Brassica oleracea HOM05D008309 ORTHO05D010308 6.2e-26 121.7 84 79.8
C04p37540 Brassica napus HOM05D000855 ORTHO05D002321 3.4e-24 115.9 88 73.9
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 1.4e-22 110.5 117 52.1
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 2.4e-22 109.8 107 55.1
BraA04t17824Z Brassica rapa HOM05D008309 ORTHO05D010308 2.7e-21 106.3 96 62.5
C01p25750 Brassica napus HOM05D008309 ORTHO05D010308 7.9e-21 104.8 140 47.9
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 1.3e-20 104.0 148 39.2
BcaC06g31080 Brassica carinata HOM05D008309 ORTHO05D010308 1.3e-20 104.0 173 38.2
BolC1t02525H Brassica oleracea HOM05D008309 ORTHO05D010308 1.3e-20 104.0 95 62.1
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 8.4e-15 84.7 136 36.0
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 8.4e-15 84.7 149 34.9
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.1e-14 84.3 136 35.3
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 4.2e-14 82.4 129 37.2
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 4.2e-14 82.4 102 42.2
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.1e-14 81.6 141 35.5
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 9.3e-14 81.3 97 43.3
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 1.2e-13 80.9 102 44.1
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 3.5e-13 79.3 141 34.8
Sopen09g020910 Solanum pennellii HOM05D002954 ORTHO05D003353 3.5e-13 79.3 98 43.9
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 4.6e-13 79.0 102 40.2
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 6.0e-13 78.6 163 32.5
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 7.9e-13 78.2 122 36.1
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 7.9e-13 78.2 153 31.4
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 2.3e-12 76.6 141 32.6
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 2.3e-12 76.6 132 37.1
AL2G20190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 6.7e-12 75.1 121 41.3
arahy.Tifrunner.gnm1.ann1.5TT13I Arachis hypogaea HOM05D002954 ORTHO05D003353 2.5e-11 73.2 97 42.3
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 2.5e-11 73.2 139 33.8
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 3.3e-11 72.8 104 34.6
arahy.Tifrunner.gnm1.ann1.B3S8NN Arachis hypogaea HOM05D002954 ORTHO05D003353 4.3e-11 72.4 102 40.2
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 4.3e-11 72.4 187 29.4
Psat5g237440 Pisum sativum HOM05D002954 ORTHO05D003353 5.6e-11 72.0 139 32.4
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 5.6e-11 72.0 87 42.5
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 7.4e-11 71.6 169 29.6
Psat0s2772g0080 Pisum sativum HOM05D002954 ORTHO05D003353 1.3e-10 70.9 184 26.1
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 1.3e-10 70.9 99 37.4
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 3.7e-10 69.3 148 31.1
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 3.7e-10 69.3 134 35.1
TAR375G1128 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.7e-10 69.3 157 28.7
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 4.8e-10 68.9 113 36.3
COL.COLO4_33862 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.8e-10 68.9 99 35.4
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.8e-10 68.9 93 38.7
MD15G1435100 Malus domestica HOM05D008595 ORTHO05D000669 6.2e-10 68.6 124 35.5
Phvul.L001985 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 6.2e-10 68.6 111 37.8
TPR.G24473 Trifolium pratense HOM05D024240 ORTHO05D000385 8.2e-10 68.2 109 38.5
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 8.2e-10 68.2 134 34.3
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 1.1e-09 67.8 146 32.2
TAR633G1156 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.1e-09 67.8 211 26.1
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 1.4e-09 67.4 131 35.9
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 1.4e-09 67.4 104 34.6
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.8e-09 67.0 134 33.6
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 1.8e-09 67.0 130 34.6
TWI34G1252 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.8e-09 67.0 134 33.6
TAR362G1088 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.8e-09 67.0 100 39.0
arahy.Tifrunner.gnm1.ann1.DXNF3X Arachis hypogaea HOM05D002954 ORTHO05D003353 3.1e-09 66.2 129 31.8
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.0e-09 65.9 134 33.6
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 5.3e-09 65.5 134 32.1
Lsat_1_v5_gn_7_21840 Lactuca sativa HOM05D008309 ORTHO05D012513 5.3e-09 65.5 126 32.5
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 6.9e-09 65.1 98 38.8
Os12g0417000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 6.9e-09 65.1 98 38.8
Lsat_1_v5_gn_4_141161 Lactuca sativa HOM05D001309 ORTHO05D000385 9.0e-09 64.7 136 30.1
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 9.0e-09 64.7 193 26.9
Nitab4.5_0000229g0050 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.0e-09 64.7 97 38.1
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.0e-09 64.7 101 39.6
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.2e-08 64.3 101 37.6
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 1.2e-08 64.3 187 29.4
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-08 64.3 100 39.0
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 1.2e-08 64.3 162 30.2
Ca_14618_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 1.5e-08 63.9 148 27.7
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 1.5e-08 63.9 138 31.9
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 1.5e-08 63.9 193 28.0
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 1.5e-08 63.9 94 38.3
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-08 63.9 133 29.3
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.5e-08 63.9 134 36.6
TAR365G0630 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.5e-08 63.9 126 36.5
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.0e-08 63.5 96 39.6
Nitab4.5_0002373g0020 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.0e-08 63.5 105 34.3
TAR633G2694 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.6e-08 63.2 147 32.0
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 3.4e-08 62.8 148 32.4
QL05p002086 Quercus lobata HOM05D008595 ORTHO05D000385 3.4e-08 62.8 118 35.6
C02p19790 Brassica napus HOM05D008309 ORTHO05D010308 4.5e-08 62.4 65 53.8
Ca_03866_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 4.5e-08 62.4 148 26.4
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 4.5e-08 62.4 95 32.6
Phvul.003G087300 Phaseolus vulgaris HOM05D002954 ORTHO05D003353 4.5e-08 62.4 183 31.7
Zm00001eb182790 Zea mays HOM05D008576 ORTHO05D000385 4.5e-08 62.4 143 32.2
AL1G66310 Arabidopsis lyrata HOM05D008309 ORTHO05D038652 5.8e-08 62.0 75 45.3
AT1G42700 Arabidopsis thaliana HOM05D008309 ORTHO05D038652 7.6e-08 61.6 93 38.7
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 7.6e-08 61.6 98 37.8
TAR381G0798 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.6e-08 61.6 99 35.4
MBI02_g35833_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.0e-07 61.2 178 28.7
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 1.0e-07 61.2 124 34.7
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 1.0e-07 61.2 124 32.3
Nitab4.5_0000416g0230 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.3e-07 60.8 96 36.5
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 1.7e-07 60.5 147 30.6
TAR376G0246 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-07 60.5 189 27.5
arahy.Tifrunner.gnm1.ann1.VWW6CB Arachis hypogaea HOM05D002954 ORTHO05D003353 2.2e-07 60.1 59 50.8
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 2.2e-07 60.1 188 28.7
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.2e-07 60.1 110 32.7
Zm00001eb308920 Zea mays HOM05D008576 ORTHO05D000385 2.2e-07 60.1 145 31.0
Zm00001eb388400 Zea mays HOM05D008576 ORTHO05D000385 2.2e-07 60.1 145 31.0
arahy.Tifrunner.gnm1.ann1.H1PTY0 Arachis hypogaea HOM05D002954 ORTHO05D010308 2.9e-07 59.7 98 32.7
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 2.9e-07 59.7 124 32.3
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.9e-07 59.7 97 36.1
Lsat_1_v5_gn_1_108060 Lactuca sativa HOM05D011604 ORTHO05D012513 3.8e-07 59.3 93 35.5
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 3.8e-07 59.3 85 35.3
Solyc10g150115.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 3.8e-07 59.3 80 40.0
Nitab4.5_0000002g0110 Nicotiana tabacum HOM05D002954 ORTHO05D003353 4.9e-07 58.9 106 32.1
arahy.Tifrunner.gnm1.ann1.FX9Q6E Arachis hypogaea HOM05D002954 ORTHO05D003353 6.5e-07 58.5 126 34.1
BcaC01g01880 Brassica carinata HOM05D008309 ORTHO05D010308 6.5e-07 58.5 58 53.4
C03p39230 Brassica napus HOM05D008309 ORTHO05D010308 6.5e-07 58.5 50 62.0
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 6.5e-07 58.5 134 33.6
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 8.4e-07 58.2 100 35.0
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-07 58.2 137 29.2
Nitab4.5_0001523g0060 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.4e-07 58.2 137 32.1
Rhsim01G0178700 Rhododendron simsii HOM05D001309 ORTHO05D000385 8.4e-07 58.2 101 34.7
Nitab4.5_0000804g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.1e-06 57.8 135 36.3
Peaxi162Scf00318g00919 Petunia axillaris HOM05D002954 ORTHO05D003353 1.1e-06 57.8 143 31.5
TWI34G0971 Tripterygium wilfordii HOM05D008309 ORTHO05D010308 1.1e-06 57.8 99 35.4
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 1.4e-06 57.4 95 34.7
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.4e-06 57.4 99 33.3
Nitab4.5_0001076g0100 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.4e-06 57.4 97 36.1
COL.COLO4_09996 Corchorus olitorius HOM05D011604 ORTHO05D012513 1.9e-06 57.0 132 30.3
TPR.G15912 Trifolium pratense HOM05D009226 ORTHO05D010767 1.9e-06 57.0 131 31.3
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 2.5e-06 56.6 95 30.5
Nitab4.5_0000817g0040 Nicotiana tabacum HOM05D002954 ORTHO05D003353 2.5e-06 56.6 100 35.0
ECA233G0549 Erigeron canadensis HOM05D008488 ORTHO05D000385 3.2e-06 56.2 161 29.2
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.2e-06 55.8 100 33.0
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 4.2e-06 55.8 99 37.4
Rhsim03G0023700 Rhododendron simsii HOM05D001309 ORTHO05D020353 4.2e-06 55.8 140 30.7
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 5.5e-06 55.5 90 34.4
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.5e-06 55.5 136 28.7
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.5e-06 55.5 136 28.7
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 5.5e-06 55.5 136 30.1
Psat7g230640 Pisum sativum HOM05D008859 ORTHO05D007166 5.5e-06 55.5 103 32.0
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 5.5e-06 55.5 113 31.9
Nitab4.5_0004210g0030 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.1e-06 55.1 154 33.1
VMungo0647G1703 Vigna mungo HOM05D002954 ORTHO05D000002 7.1e-06 55.1 149 29.5
Ca_14583_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 9.3e-06 54.7 132 30.3
COL.COLO4_21802 Corchorus olitorius HOM05D001309 ORTHO05D000385 9.3e-06 54.7 92 32.6
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 9.3e-06 54.7 143 32.2
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.3e-06 54.7 102 30.4


User provided reference genes

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