Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 9.0e-136 486.9 239 100.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 9.0e-136 486.9 239 100.0
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-134 482.3 239 98.7
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 6.5e-134 480.7 239 98.3
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.3e-130 468.4 239 95.4
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.0e-123 445.3 239 89.5
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.5e-122 443.0 240 89.6
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.1e-116 422.5 239 87.4
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.1e-112 408.3 232 87.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 5.9e-111 404.4 233 85.8
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.1e-100 369.4 229 77.7
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.8e-97 359.0 229 76.0
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 3.7e-97 358.6 229 76.0
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 3.7e-97 358.6 229 76.0
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.7e-97 358.6 229 76.0
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 8.2e-97 357.5 200 87.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-96 356.7 229 76.0
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.3e-96 354.8 226 76.1
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.6e-95 353.2 230 73.0
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 7.7e-95 350.9 224 77.2
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.5e-93 346.7 235 71.5
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.2e-93 345.1 222 74.3
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.2e-93 345.1 223 74.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.0e-91 338.6 230 71.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 7.5e-90 334.3 229 70.7
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-89 333.6 229 70.3
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.8e-89 332.4 180 88.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.8e-81 305.8 195 73.3
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 6.3e-81 304.7 197 75.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 3.1e-80 302.4 199 73.4
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 5.9e-79 298.1 195 71.3
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 3.8e-78 295.4 214 65.4
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 5.0e-78 295.0 198 70.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-77 293.9 194 71.1
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.1e-77 293.9 194 71.1
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 1.1e-77 293.9 204 66.2
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.5e-77 293.5 194 72.2
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 5.6e-77 291.6 221 64.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 9.5e-77 290.8 208 68.3
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 9.5e-77 290.8 208 68.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 8.0e-76 287.7 205 66.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 6.8e-75 284.6 214 64.5
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 8.9e-75 284.3 195 67.7
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 9.8e-74 280.8 204 65.7
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 9.8e-74 280.8 225 61.3
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 8.3e-73 277.7 200 65.0
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.1e-72 277.3 192 68.8
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.1e-72 275.4 194 68.0
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 4.1e-72 275.4 195 65.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 7.0e-72 274.6 229 62.4
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 7.0e-72 274.6 191 67.5
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 7.0e-72 274.6 191 67.5
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.2e-71 273.9 205 61.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.2e-71 273.9 202 64.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.2e-71 273.9 201 65.2
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.7e-71 272.7 215 61.4
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.5e-71 272.3 194 66.0
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 6.0e-71 271.6 224 57.6
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 3.9e-70 268.9 197 66.0
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.0e-70 268.5 189 66.1
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 5.0e-70 268.5 189 66.1
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.3e-69 265.4 208 61.1
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 4.7e-68 261.9 181 68.5
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.7e-68 261.9 193 64.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.6e-66 256.1 205 59.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 2.6e-66 256.1 200 60.0
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 4.4e-66 255.4 197 60.9
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.5e-66 254.6 213 58.7
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.7e-65 253.4 207 57.5
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 3.2e-64 249.2 194 63.4
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.6e-63 246.9 231 53.7
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 1.2e-60 237.3 214 55.1
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 2.8e-60 236.1 163 65.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 6.2e-60 235.0 198 55.6
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.1e-59 234.2 193 56.5
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 5.2e-59 231.9 193 56.0
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.3e-57 227.3 229 53.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.9e-57 226.1 169 61.5
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.7e-57 225.7 214 48.1
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.6e-55 220.3 191 53.9
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.7e-55 219.5 145 66.9
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 2.7e-55 219.5 190 57.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 7.8e-55 218.0 157 63.1
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.1e-53 214.2 193 52.8
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 4.3e-53 212.2 192 55.2
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.1e-52 209.9 192 49.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 3.6e-52 209.1 208 48.1
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 8.1e-52 208.0 193 51.3
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 2.6e-50 203.0 150 63.3
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.6e-50 203.0 150 63.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 2.6e-50 203.0 141 64.5
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.4e-50 202.6 192 50.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.4e-50 202.6 192 51.0
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.8e-50 201.8 193 50.3
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 7.6e-50 201.4 149 63.1
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.9e-50 201.1 213 49.3
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.8e-49 199.1 204 45.6
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.4e-48 196.4 159 60.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 9.2e-48 194.5 143 64.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 3.5e-47 192.6 201 43.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.3e-46 190.7 203 44.3
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-46 190.3 201 43.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 8.7e-46 188.0 143 61.5
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 8.7e-46 188.0 193 44.6
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.6e-44 183.7 191 44.5
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 2.8e-44 183.0 194 48.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.6e-44 182.6 199 43.2
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 3.6e-44 182.6 193 44.6
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.8e-43 180.3 221 39.8
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 3.1e-43 179.5 194 42.8
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 5.2e-43 178.7 193 46.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.0e-43 177.9 199 42.2
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.2e-42 177.6 197 43.7
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.5e-42 177.2 197 44.2
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.5e-42 177.2 196 44.4
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 3.8e-41 172.6 167 47.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.4e-41 171.8 185 43.8
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.9e-40 170.2 193 45.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.2e-40 169.1 234 35.9
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 9.3e-40 167.9 199 40.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.2e-39 167.5 198 39.9
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 2.1e-39 166.8 229 35.8
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 6.6e-38 161.8 164 49.4
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.5e-37 160.6 115 68.7
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 7.3e-37 158.3 195 43.6
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 9.6e-37 157.9 195 42.1
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-36 157.5 175 42.9
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.6e-36 157.1 185 41.1
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 1.6e-36 157.1 170 48.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.8e-36 156.4 141 49.6
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.6e-36 156.0 210 40.5
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.2e-36 155.2 185 40.5
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 6.2e-36 155.2 188 39.4
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 8.1e-36 154.8 181 38.7
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 8.1e-36 154.8 195 40.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.8e-35 153.7 194 40.2
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-34 151.0 128 56.2
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.6e-34 149.8 194 39.7
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.7e-33 147.1 189 37.6
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 6.4e-33 145.2 197 36.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.1e-32 144.4 194 40.7
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.9e-32 143.7 202 35.1
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.1e-32 141.7 193 39.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.3e-30 136.7 93 76.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 6.7e-30 135.2 196 37.2
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 8.7e-30 134.8 87 73.6
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 2.8e-28 129.8 173 39.3
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.1e-27 127.9 208 37.0
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-26 124.0 134 46.3
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.0e-26 123.6 134 46.3
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.9e-26 121.3 192 33.9
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 1.3e-25 120.9 76 75.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 2.2e-25 120.2 191 33.5
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 4.3e-21 105.9 74 75.7
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 7.4e-21 105.1 191 30.4
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 8.2e-20 101.7 99 45.5
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.9e-16 90.5 198 27.8
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-16 89.7 74 55.4
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 5.5e-16 89.0 66 69.7
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.2e-15 87.8 175 30.3
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 6.0e-15 85.5 141 39.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.0e-14 84.7 168 31.0
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.1e-11 74.7 51 68.6
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 2.0e-10 70.5 121 35.5
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 9.4e-08 61.6 227 24.2
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 3.6e-07 59.7 168 25.6
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.3e-06 57.0 54 51.9


User provided reference genes

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