Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-133 479.6 236 100.0
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.4e-133 479.6 236 100.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 9.2e-133 476.9 236 99.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.7e-132 475.3 236 98.7
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-131 473.4 236 98.7
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 4.3e-122 441.4 227 94.7
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-111 405.6 236 84.7
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.6e-111 405.6 232 86.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 9.9e-111 403.7 234 84.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.9e-109 399.4 231 85.7
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.5e-103 378.3 238 79.8
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 7.6e-103 377.5 236 79.7
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 7.6e-103 377.5 234 79.9
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 3.3e-98 362.1 232 78.4
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.6e-97 359.8 222 79.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.1e-97 359.4 229 76.0
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-97 357.8 229 75.5
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 6.2e-97 357.8 221 77.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-96 357.1 229 76.0
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.1e-96 357.1 229 76.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.0e-96 355.1 234 76.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 7.6e-95 350.9 229 74.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.0e-94 350.5 233 75.1
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 2.1e-92 342.8 235 72.8
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.9e-90 336.3 236 74.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 2.5e-82 309.3 205 73.7
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.3e-82 308.9 222 70.3
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.2e-79 300.4 177 80.8
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-78 295.4 236 66.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.6e-76 290.0 194 71.6
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 3.9e-75 285.4 201 69.2
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 4.3e-74 282.0 204 65.7
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 2.4e-72 276.2 200 65.0
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.4e-72 276.2 193 66.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.4e-72 276.2 194 67.0
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 6.9e-72 274.6 211 65.4
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.0e-71 273.1 200 66.0
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.9e-71 271.6 194 64.9
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.9e-71 271.6 194 64.9
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 1.7e-70 270.0 195 66.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.4e-69 266.9 200 63.0
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.5e-69 265.0 201 64.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.5e-69 265.0 201 64.7
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.2e-68 263.8 201 63.7
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.6e-68 263.5 194 65.5
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 3.6e-68 262.3 201 64.2
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.0e-67 260.8 191 64.4
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.4e-67 260.4 189 65.6
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.8e-67 260.0 201 62.2
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.8e-67 260.0 201 62.2
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 3.0e-67 259.2 194 62.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 5.1e-67 258.5 192 64.1
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 8.8e-67 257.7 199 62.8
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.1e-66 257.3 204 60.3
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 7.4e-66 254.6 192 63.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 9.7e-66 254.2 202 59.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 3.7e-65 252.3 192 61.5
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.7e-65 252.3 192 61.5
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.1e-64 250.8 213 59.2
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 1.8e-64 250.0 189 64.6
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 4.1e-64 248.8 194 59.3
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 5.3e-64 248.4 189 60.3
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.2e-63 247.3 204 58.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 7.7e-63 244.6 193 60.6
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 5.0e-62 241.9 173 65.3
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 2.5e-61 239.6 205 55.1
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 3.2e-61 239.2 192 58.3
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-60 237.3 195 58.5
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.8e-59 233.4 200 56.0
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.0e-58 229.9 213 54.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 5.7e-58 228.4 230 50.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.3e-57 227.3 162 63.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.7e-57 226.9 201 53.2
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 3.7e-57 225.7 230 49.6
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.6e-55 220.3 192 56.2
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 7.7e-55 218.0 192 55.7
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.9e-54 216.1 141 68.1
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.9e-54 216.1 193 53.4
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 7.2e-53 211.5 197 53.3
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.4e-51 207.2 191 52.4
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.8e-51 206.8 191 55.5
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.3e-51 206.5 167 56.9
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 5.2e-51 205.3 200 52.5
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-50 204.1 120 85.0
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.5e-50 203.8 193 51.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.5e-50 203.8 224 48.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.4e-50 202.6 157 58.6
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 5.7e-50 201.8 200 52.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 7.5e-50 201.4 191 51.8
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 7.5e-50 201.4 189 48.7
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.8e-49 199.5 202 52.0
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 8.3e-49 198.0 137 65.7
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.4e-48 197.2 219 47.5
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-45 187.6 195 45.1
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 4.2e-45 185.7 191 49.2
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.5e-45 185.3 197 44.7
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 9.4e-45 184.5 145 57.9
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-44 183.7 144 58.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.6e-44 183.7 193 45.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.1e-44 183.3 201 43.8
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.1e-44 181.8 195 47.2
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.0e-43 181.0 201 43.3
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 6.8e-43 178.3 170 52.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 8.8e-43 177.9 138 60.1
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 3.4e-42 176.0 194 46.9
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.4e-42 175.6 194 43.8
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 6.3e-41 171.8 195 42.6
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.1e-40 171.0 138 57.2
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.1e-40 169.1 202 43.1
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 4.1e-40 169.1 193 41.5
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 5.4e-40 168.7 191 42.9
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 7.0e-40 168.3 194 45.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.6e-39 167.2 241 39.4
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.7e-39 166.4 206 40.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 4.5e-39 165.6 193 42.5
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.5e-39 165.6 193 39.9
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.3e-38 164.1 167 45.5
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.3e-38 163.3 195 42.1
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.8e-38 162.5 192 42.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 5.0e-38 162.2 193 44.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.1e-37 161.0 195 40.0
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.3e-37 159.5 185 42.7
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.6e-36 156.0 185 43.8
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.0e-35 154.5 201 36.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 1.8e-35 153.7 189 39.7
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.8e-35 153.7 170 47.1
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 6.8e-35 151.8 191 38.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 8.9e-35 151.4 141 48.9
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.6e-34 149.8 163 48.5
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 7.5e-34 148.3 185 41.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.5e-34 148.3 193 39.9
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.9e-33 146.4 195 40.0
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.7e-33 146.0 189 39.2
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 6.4e-33 145.2 96 66.7
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-32 144.1 197 37.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.1e-32 142.5 195 39.5
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.0e-32 141.7 171 40.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 4.6e-31 139.0 195 37.4
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 5.9e-31 138.7 202 37.6
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.8e-31 138.3 197 38.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.8e-31 138.3 200 36.5
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.3e-29 132.9 210 35.2
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 9.5e-29 131.3 194 37.6
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 5.8e-26 122.1 174 39.1
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.7e-25 120.6 191 34.6
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.2e-25 120.2 102 55.9
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.9e-25 119.8 102 55.9
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.4e-24 117.5 208 34.6
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.9e-24 117.1 191 35.1
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.2e-24 116.3 196 32.7
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 3.3e-21 106.3 76 68.4
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 6.2e-20 102.1 100 45.0
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.3e-19 100.1 86 60.5
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 3.1e-19 99.8 85 55.3
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 4.0e-19 99.4 143 35.0
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 1.3e-14 84.3 74 62.2
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.9e-14 82.8 74 50.0
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.1e-14 82.4 192 27.1
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 2.5e-13 80.1 175 27.4
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.2e-12 77.8 101 46.5
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.6e-10 70.1 66 54.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.2e-09 67.0 250 24.4
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 3.7e-09 66.2 121 33.9
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 3.7e-09 66.2 57 57.9
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 4.6e-07 59.3 167 25.7


User provided reference genes

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