Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.1e-99 365.2 186 100.0
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 5.8e-90 334.3 210 84.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 4.2e-88 328.2 236 75.4
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 3.9e-86 321.6 236 73.7
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 8.7e-78 293.9 236 67.8
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 5.6e-77 291.2 236 66.9
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 7.4e-77 290.8 236 66.9
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 7.4e-77 290.8 236 66.9
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-76 288.9 236 66.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 5.5e-72 274.6 227 65.2
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.6e-68 263.1 236 61.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.2e-68 262.7 231 62.8
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.5e-61 240.0 234 56.8
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.0e-61 239.6 236 57.6
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.5e-61 239.2 238 59.2
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 8.5e-57 224.2 237 55.7
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.1e-56 223.8 211 56.9
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.5e-56 222.6 233 53.2
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.5e-56 222.6 229 53.3
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.5e-56 222.6 229 53.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.5e-56 222.6 229 52.8
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.5e-56 221.5 234 54.7
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 7.2e-56 221.1 229 52.4
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 1.6e-55 219.9 229 52.8
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.1e-55 219.5 221 52.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 4.4e-53 211.8 239 51.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 9.4e-48 194.1 210 51.9
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 9.1e-43 177.6 205 49.3
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 5.9e-42 174.9 195 49.2
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 7.7e-42 174.5 177 52.5
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-41 173.3 92 95.7
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 3.8e-41 172.2 211 47.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 8.5e-41 171.0 198 47.0
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 5.5e-40 168.3 194 46.4
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 6.1e-39 164.9 193 46.6
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 8.0e-39 164.5 240 40.4
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.0e-38 162.2 195 46.2
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 4.0e-38 162.2 195 46.2
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 6.7e-38 161.4 193 45.1
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.7e-38 161.4 193 44.6
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 6.7e-38 161.4 193 44.6
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 8.8e-38 161.0 201 43.8
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 8.8e-38 161.0 204 42.6
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 8.8e-38 161.0 195 44.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 2.0e-37 159.8 195 44.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 4.4e-37 158.7 188 46.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 4.4e-37 158.7 195 46.7
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 9.7e-37 157.5 194 44.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 9.7e-37 157.5 194 44.3
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.3e-36 157.1 199 44.2
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.7e-36 156.8 191 45.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 3.7e-36 155.6 205 43.4
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.1e-35 154.1 193 45.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.1e-35 154.1 200 42.5
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.1e-35 154.1 213 41.8
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.8e-35 153.3 192 44.3
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 5.3e-35 151.8 195 43.1
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 7.0e-35 151.4 216 41.2
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 9.1e-35 151.0 192 42.7
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 9.1e-35 151.0 192 42.7
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 3.5e-34 149.1 189 42.3
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.5e-34 149.1 194 42.8
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.0e-33 147.5 192 41.7
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.0e-33 147.5 185 43.8
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.2e-33 146.4 192 40.6
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.8e-33 145.6 193 43.0
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 9.4e-32 141.0 197 38.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-31 140.6 177 41.2
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.6e-31 140.2 201 38.8
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 3.6e-31 139.0 206 37.9
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 8.0e-31 137.9 174 43.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.2e-29 134.0 203 39.9
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.6e-29 132.9 190 40.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 3.4e-29 132.5 192 40.6
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 4.4e-29 132.1 209 37.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.7e-29 131.7 230 35.7
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.4e-27 126.3 204 33.8
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 4.5e-26 122.1 169 37.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 5.9e-26 121.7 184 39.1
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 5.9e-26 121.7 196 37.2
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 5.9e-26 121.7 196 37.2
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.9e-25 119.4 168 39.9
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.9e-25 119.4 198 35.4
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 4.2e-24 115.5 117 48.7
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.5e-24 115.2 237 33.3
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.2e-23 114.0 216 33.3
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.6e-23 113.6 104 51.9
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-23 113.6 240 32.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.1e-23 113.2 182 35.2
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 3.6e-23 112.5 171 38.0
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 6.1e-23 111.7 163 39.3
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 6.1e-23 111.7 178 39.9
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 1.4e-22 110.5 101 48.5
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-22 110.2 101 47.5
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-22 109.8 100 49.0
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.9e-22 107.8 182 35.7
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 2.0e-21 106.7 182 36.3
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.0e-21 106.7 184 36.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 4.4e-21 105.5 201 30.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.4e-21 105.5 246 35.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.7e-20 103.6 163 37.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.3e-20 101.7 86 60.5
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 8.3e-20 101.3 204 29.9
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 8.3e-20 101.3 204 29.9
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.4e-19 100.5 200 30.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 3.1e-19 99.4 210 29.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 3.1e-19 99.4 176 36.9
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 4.1e-19 99.0 77 64.9
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 4.1e-19 99.0 145 39.3
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 5.4e-19 98.6 206 28.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.2e-18 97.4 200 29.0
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.0e-18 96.7 198 30.3
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 4.5e-18 95.5 191 29.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.0e-17 94.4 197 31.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.7e-17 93.6 200 26.5
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 3.9e-17 92.4 200 33.0
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.0e-17 92.0 156 37.2
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 5.0e-17 92.0 177 33.3
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 6.6e-17 91.7 192 29.7
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 1.1e-16 90.9 210 28.1
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.9e-16 90.1 193 25.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.5e-16 89.7 206 29.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.3e-16 89.0 199 29.1
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.6e-16 88.6 187 27.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 1.2e-15 87.4 196 28.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.6e-15 87.0 193 29.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 3.6e-15 85.9 183 28.4
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 8.0e-15 84.7 74 60.8
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-14 84.3 66 62.1
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.4e-14 84.0 194 30.9
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.8e-14 83.6 194 28.9
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 3.1e-14 82.8 120 37.5
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.2e-13 80.9 183 29.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 1.5e-13 80.5 194 27.3
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.0e-13 80.1 156 30.1
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 2.0e-13 80.1 159 30.2
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 3.4e-13 79.3 181 27.1
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.4e-13 79.3 166 28.3
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 9.8e-13 77.8 153 34.6
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 9.8e-13 77.8 189 27.5
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.2e-12 76.6 194 26.8
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 6.4e-12 75.1 189 29.6
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 6.4e-12 75.1 194 26.3
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.3e-12 74.7 188 26.6
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.9e-11 73.6 190 26.8
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.4e-11 72.0 53 60.4
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.4e-11 72.0 228 25.9
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 7.0e-11 71.6 66 54.5
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.2e-10 70.9 210 25.2
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.6e-10 70.5 211 25.1
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.7e-10 69.7 192 27.1
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.6e-09 65.1 194 25.8
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 8.6e-09 64.7 197 25.9
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 1.5e-08 63.9 46 65.2
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.9e-08 63.5 141 29.1
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.5e-08 63.2 57 52.6
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.5e-08 63.2 57 52.6
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.3e-08 62.4 138 29.0


User provided reference genes

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