Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09666 Brassica carinata HOM05D007347 ORTHO05D009296 9.5e-110 401.7 340 100.0
C04p45350 Brassica napus HOM05D007347 ORTHO05D009296 9.5e-110 401.7 340 100.0
BolC4t26117H Brassica oleracea HOM05D007347 ORTHO05D009296 9.5e-110 401.7 340 100.0
BraA04t16830Z Brassica rapa HOM05D007347 ORTHO05D009296 2.0e-104 384.0 340 97.6
A04p11620 Brassica napus HOM05D007347 ORTHO05D009296 4.6e-104 382.9 340 97.6
BcaB06g27240 Brassica carinata HOM05D007347 ORTHO05D009296 4.1e-97 359.8 340 93.5
Thhalv10028323m.g Eutrema salsugineum HOM05D007347 ORTHO05D009296 3.0e-95 353.6 343 90.1
SpUn0124_0020 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.4e-92 344.7 343 89.2
SpUn0185_0030 Schrenkiella parvula HOM05D007347 ORTHO05D009296 1.4e-92 344.7 343 89.2
AL7G51690 Arabidopsis lyrata HOM05D007347 ORTHO05D009296 6.4e-90 335.9 343 86.3
Carub.0007s3713 Capsella rubella HOM05D007347 ORTHO05D009296 1.2e-88 331.6 343 87.5
AT5G38730 Arabidopsis thaliana HOM05D007347 ORTHO05D009296 1.6e-88 331.3 343 85.1
Aa31LG9G16920 Aethionema arabicum HOM05D007347 ORTHO05D009296 3.5e-72 276.9 183 76.0
THA.LOC104805542 Tarenaya hassleriana HOM05D007347 ORTHO05D009296 1.0e-71 275.4 190 71.6
FAN23G0923 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.1e-48 198.0 183 56.8
FAN26G2104 Fragaria x ananassa HOM05D007347 ORTHO05D009296 2.1e-48 198.0 183 56.8
FvH4_1g20970 Fragaria vesca HOM05D007347 ORTHO05D009296 3.5e-48 197.2 183 56.3
FAN23G0930 Fragaria x ananassa HOM05D007347 ORTHO05D009296 4.6e-48 196.8 183 56.3
Psat4g145840 Pisum sativum HOM05D007347 ORTHO05D009296 7.9e-48 196.1 180 52.2
SGA_v2.0_scaffold204G41666 Striga asiatica HOM05D007347 ORTHO05D009296 1.8e-47 194.9 191 51.3
RcHm_v2.0_Chr2g0114451 Rosa chinensis HOM05D007347 ORTHO05D009296 2.3e-47 194.5 180 55.6
FAN19G1358 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.9e-47 193.7 183 55.7
QL06p007153 Quercus lobata HOM05D007347 ORTHO05D009296 5.1e-47 193.4 193 50.8
RcHm_v2.0_Chr6g0269561 Rosa chinensis HOM05D007347 ORTHO05D009296 8.7e-47 192.6 182 54.4
Cc07_g04830 Coffea canephora HOM05D007347 ORTHO05D009296 1.5e-46 191.8 191 48.2
Migut.H00560 Erythranthe guttata HOM05D007347 ORTHO05D009296 7.4e-46 189.5 189 51.3
Lsat_1_v5_gn_2_86161 Lactuca sativa HOM05D007347 ORTHO05D009296 2.2e-45 188.0 193 51.3
Prupe.6G186200 Prunus persica HOM05D007347 ORTHO05D009296 2.8e-45 187.6 187 51.3
MELO3C026797.2 Cucumis melo HOM05D007347 ORTHO05D009296 8.2e-45 186.0 181 50.8
Medtr8g039270 Medicago truncatula HOM05D007347 ORTHO05D009296 1.1e-44 185.7 187 49.7
ClCG11G001180 Citrullus lanatus HOM05D007347 ORTHO05D009296 1.4e-44 185.3 193 49.2
HanXRQChr14g0448021 Helianthus annuus HOM05D007347 ORTHO05D009296 3.1e-44 184.1 193 51.3
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 9.0e-44 182.6 187 48.7
TPR.G30433 Trifolium pratense HOM05D007347 ORTHO05D009296 9.0e-44 182.6 171 50.3
Cpa.g.sc16.131 Carica papaya HOM05D007347 ORTHO05D009296 1.5e-43 181.8 176 51.1
MD15G1324700 Malus domestica HOM05D007347 ORTHO05D009296 2.6e-43 181.0 187 49.7
Dinv34879 Davidia involucrata HOM05D007347 ORTHO05D009296 3.4e-43 180.6 191 50.3
Nitab4.5_0007154g0010 Nicotiana tabacum HOM05D007347 ORTHO05D009296 3.4e-43 180.6 191 48.2
MSTRG.24902 Avicennia marina HOM05D007347 ORTHO05D009296 7.6e-43 179.5 185 50.3
CSS0000287 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 7.6e-43 179.5 186 48.9
CSS0049471 Camellia sinensis var. sinensis HOM05D007347 ORTHO05D009296 7.6e-43 179.5 186 48.9
CsaV3_5G013240 Cucumis sativus L. HOM05D007347 ORTHO05D009296 7.6e-43 179.5 181 49.7
TWI15G0869 Tripterygium wilfordii HOM05D007347 ORTHO05D009296 1.3e-42 178.7 188 51.1
CiPaw.03G007800 Carya illinoinensis HOM05D007347 ORTHO05D009296 3.8e-42 177.2 188 49.5
Lalb_Chr19g0132391 Lupinus albus HOM05D007347 ORTHO05D009296 5.0e-42 176.8 172 53.5
CANSAT64G0714 Cannabis sativa HOM05D007347 ORTHO05D009296 6.5e-42 176.4 194 47.4
Potri.017G108600 Populus trichocarpa HOM05D007347 ORTHO05D009296 6.5e-42 176.4 185 48.6
Lj3g0007423 Lotus japonicus HOM05D007347 ORTHO05D009296 8.5e-42 176.0 176 51.1
Actinidia18106 Actinidia chinensis HOM05D007347 ORTHO05D009296 1.1e-41 175.6 191 48.2
Peaxi162Scf00004g02628 Petunia axillaris HOM05D007347 ORTHO05D009296 1.1e-41 175.6 191 46.1
Glyma.15G236300 Glycine max HOM05D007347 ORTHO05D009296 2.5e-41 174.5 191 49.2
Hma1.2p1_1364F.1_g278380 Hydrangea macrophylla HOM05D007347 ORTHO05D009296 4.2e-41 173.7 188 48.9
Glyma.13G197700 Glycine max HOM05D007347 ORTHO05D009296 7.2e-41 172.9 192 49.0
Sed0006376 Sechium edule HOM05D007347 ORTHO05D009296 1.2e-40 172.2 181 49.7
SalBow1G8225 Salvia bowleyana HOM05D007347 ORTHO05D009296 2.1e-40 171.4 185 47.6
Duzib138G0808 Durio zibethinus HOM05D007347 ORTHO05D009296 3.6e-40 170.6 178 52.2
Sopen04g021380 Solanum pennellii HOM05D007347 ORTHO05D009296 3.6e-40 170.6 189 45.5
Sabra17G0091200 Salix brachista HOM05D007347 ORTHO05D009296 3.0e-39 167.5 182 48.4
CAN.G71.18 Capsicum annuum HOM05D007347 ORTHO05D009296 3.9e-39 167.2 185 46.5
Solyc04g050550.3 Solanum lycopersicum HOM05D007347 ORTHO05D009296 5.1e-39 166.8 187 45.5
Gohir.D02G204900 Gossypium hirsutum HOM05D007347 ORTHO05D009296 6.7e-39 166.4 181 49.7
Eucgr.I02100 Eucalyptus grandis HOM05D007347 ORTHO05D009296 1.5e-38 165.2 167 53.3
Thecc.04G145700 Theobroma cacao HOM05D007347 ORTHO05D009296 2.5e-38 164.5 187 49.2
Cfa007995 Carpinus fangiana HOM05D007347 ORTHO05D009296 3.3e-38 164.1 170 50.6
Gorai.005G232200 Gossypium raimondii HOM05D007347 ORTHO05D009296 4.3e-38 163.7 178 50.6
VMungo1127G1072 Vigna mungo HOM05D007347 ORTHO05D009296 7.4e-38 162.9 164 52.4
Haze_14081 Corylus avellana HOM05D007347 ORTHO05D009296 4.8e-37 160.2 181 47.5
Ciclev10011342m.g Citrus clementina HOM05D007347 ORTHO05D009296 1.4e-36 158.7 184 42.9
AUR62019500 Chenopodium quinoa HOM05D007347 ORTHO05D009296 1.8e-36 158.3 192 44.3
Ah.16g102100 Amaranthus hybridus HOM05D007347 ORTHO05D009296 4.1e-36 157.1 191 43.5
Phvul.011G207300 Phaseolus vulgaris HOM05D007347 ORTHO05D009296 5.3e-36 156.8 164 50.6
Gohir.A03G183300 Gossypium hirsutum HOM05D007347 ORTHO05D009296 9.1e-36 156.0 178 48.9
TAR371G0226 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.6e-35 154.5 191 41.4
TAR629G3514 Trochodendron aralioides HOM05D007347 ORTHO05D009296 2.6e-35 154.5 191 41.4
Manes.18G103700 Manihot esculenta HOM05D007347 ORTHO05D009296 1.3e-34 152.1 167 48.5
PSO782G5207 Papaver somniferum HOM05D007347 ORTHO05D009296 3.8e-34 150.6 177 42.4
Nn3g18549 Nelumbo nucifera HOM05D007347 ORTHO05D009296 1.1e-33 149.1 181 43.1
GSVIVG01036486001 Vitis vinifera HOM05D007347 ORTHO05D009296 1.4e-33 148.7 168 46.4
Sc10g0001490 Simmondsia chinensis HOM05D007347 ORTHO05D009296 1.9e-33 148.3 191 41.4
ATR0124G035 Amborella trichopoda HOM05D007347 ORTHO05D009296 2.1e-32 144.8 193 44.0
MBI03_g44527_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 2.7e-32 144.4 181 41.4
ECA238G4434 Erigeron canadensis HOM05D007347 ORTHO05D009296 3.0e-31 141.0 108 64.8
FAN28G0832 Fragaria x ananassa HOM05D007347 ORTHO05D009296 3.9e-31 140.6 143 53.8
Aqoxy3G04330 Aquilegia oxysepala HOM05D007347 ORTHO05D009296 4.4e-30 137.1 177 43.5
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 7.4e-30 136.3 169 45.6
SHI25538 Sapria himalayana HOM05D002460 ORTHO05D002716 1.3e-29 135.6 170 45.3
COL.COLO4_23655 Corchorus olitorius HOM05D007347 ORTHO05D009296 2.0e-27 128.3 109 58.7
Atru.chr10.1870 Acer truncatum HOM05D007347 ORTHO05D009296 1.1e-22 112.5 187 36.4
AUR62036136 Chenopodium quinoa HOM05D007347 ORTHO05D009296 2.2e-21 108.2 109 49.5
Ca_23964_v3 Cicer arietinum L. HOM05D007347 ORTHO05D009296 4.8e-21 107.1 89 58.4
MBI03_g13436_MAGBIO Magnolia biondii HOM05D007347 ORTHO05D009296 3.5e-19 100.9 99 48.5
CARHR283670 Cardamine hirsuta HOM05D007347 ORTHO05D009296 1.8e-12 78.6 41 87.8
Zm00001eb259350 Zea mays HOM05D007347 ORTHO05D009296 2.9e-10 71.2 160 35.0
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 2.7e-08 64.7 180 25.6
SEGI_14415 Sequoiadendron giganteum HOM05D006931 ORTHO05D009509 4.7e-08 63.9 176 25.0
CDE05G1387 Ceratophyllum demersum HOM05D007347 ORTHO05D009296 6.1e-08 63.5 49 51.0
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.4e-07 62.4 150 30.7
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.8e-07 62.0 195 25.6
Oeu033427.1 Olea europaea HOM05D007347 ORTHO05D009296 2.3e-07 61.6 36 72.2
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 8.8e-07 59.7 174 25.3
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 8.8e-07 59.7 178 23.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.2e-06 59.3 166 29.5
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.2e-06 59.3 166 29.5
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 1.2e-06 59.3 178 26.4
PGR004G2133 Punica granatum HOM05D000104 ORTHO05D009920 1.5e-06 58.9 178 25.3
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 1.5e-06 58.9 182 24.7
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 1.5e-06 58.9 174 27.0
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.0e-06 58.5 143 32.9
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 2.0e-06 58.5 135 30.4
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 2.6e-06 58.2 187 23.0
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 2.6e-06 58.2 182 24.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.4e-06 57.8 137 29.2
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 3.4e-06 57.8 171 25.7
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 3.4e-06 57.8 171 25.7
Rhsim10G0062500 Rhododendron simsii HOM05D007347 ORTHO05D009296 4.4e-06 57.4 40 65.0
ATR1089G063 Amborella trichopoda HOM05D008483 ORTHO05D010726 5.7e-06 57.0 135 28.9
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.7e-06 57.0 166 29.5
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 5.7e-06 57.0 178 26.4
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 5.7e-06 57.0 178 27.5
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 7.5e-06 56.6 166 29.5
Hund04386 Selenicereus undatus HOM05D006931 ORTHO05D008782 9.8e-06 56.2 133 25.6
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 9.8e-06 56.2 181 30.4
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 9.8e-06 56.2 178 27.5


User provided reference genes

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