Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 7.7e-193 677.2 389 100.0
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 2.5e-191 672.2 389 98.7
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 2.7e-182 642.1 389 95.6
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 7.0e-170 600.9 389 89.2
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 7.7e-169 597.4 389 90.7
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 4.2e-167 591.7 389 84.6
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.2e-166 590.1 405 85.7
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 6.3e-163 577.8 401 86.5
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 6.3e-163 577.8 405 86.4
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 8.0e-142 507.7 351 88.6
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.2e-140 503.8 410 76.1
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 3.2e-122 442.6 413 67.3
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 7.1e-122 441.4 414 66.7
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.2e-121 440.7 460 63.5
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 4.3e-119 432.2 414 68.4
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 7.3e-119 431.4 420 64.8
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 9.6e-119 431.0 402 65.4
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 6.2e-118 428.3 403 64.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.1e-117 427.6 411 66.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 5.2e-117 425.2 400 66.0
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.6e-116 422.9 413 65.6
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 2.6e-116 422.9 432 65.3
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 4.4e-116 422.2 448 60.5
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 2.9e-115 419.5 430 61.4
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 3.8e-115 419.1 449 60.6
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 3.8e-115 419.1 448 63.4
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 6.4e-115 418.3 410 63.9
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.4e-114 417.2 456 61.0
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.4e-114 417.2 436 64.4
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 1.9e-114 416.8 441 63.9
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 3.2e-114 416.0 442 61.3
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 4.2e-114 415.6 420 67.9
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.4e-114 415.2 421 67.7
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 9.3e-114 414.5 431 62.9
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.2e-113 414.1 431 65.7
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.2e-113 414.1 411 57.7
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 3.5e-113 412.5 431 62.2
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 4.6e-113 412.1 419 64.4
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 4.6e-113 412.1 440 63.9
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 4.6e-113 412.1 421 66.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 6.0e-113 411.8 254 81.5
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.0e-113 411.8 426 66.7
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 7.8e-113 411.4 423 66.4
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 1.0e-112 411.0 432 63.4
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.3e-112 410.6 445 62.2
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-112 410.6 383 70.0
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.3e-112 409.8 391 59.8
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 5.1e-112 408.7 451 58.8
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 5.1e-112 408.7 449 58.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 6.6e-112 408.3 422 66.6
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.1e-111 407.5 446 61.0
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 1.1e-111 407.5 389 65.3
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 1.1e-111 407.5 252 80.6
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 2.5e-111 406.4 386 66.6
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 2.5e-111 406.4 438 64.4
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.6e-111 405.2 255 80.4
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 1.3e-110 404.1 495 56.2
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.6e-110 403.7 448 62.1
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.6e-110 403.7 443 62.1
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 2.1e-110 403.3 391 67.8
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 2.1e-110 403.3 444 61.0
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 3.6e-110 402.5 254 80.7
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 3.6e-110 402.5 451 60.1
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 4.8e-110 402.1 374 60.4
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 6.2e-110 401.7 445 60.7
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 8.1e-110 401.4 401 65.6
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-109 401.0 412 65.8
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.1e-109 401.0 420 65.7
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.4e-109 400.6 451 57.0
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.4e-109 400.6 252 79.4
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.4e-109 400.6 422 59.2
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 2.4e-109 399.8 438 61.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 3.1e-109 399.4 389 67.4
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 9.0e-109 397.9 382 57.9
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.2e-108 397.5 460 56.3
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.6e-108 396.4 414 64.7
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.4e-108 396.0 447 59.7
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 4.4e-108 395.6 403 65.3
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 4.4e-108 395.6 413 65.1
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.6e-108 394.8 411 65.2
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 9.9e-108 394.4 417 64.0
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 2.2e-107 393.3 228 82.9
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 2.9e-107 392.9 458 58.5
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 3.8e-107 392.5 389 63.2
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 4.2e-106 389.0 390 67.2
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 4.2e-106 389.0 247 77.7
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 5.4e-106 388.7 262 74.0
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 2.1e-105 386.7 492 56.1
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 4.6e-105 385.6 484 54.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.0e-104 384.4 433 62.8
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.3e-104 384.0 389 66.8
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.1e-103 380.9 361 65.1
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.5e-103 380.6 529 54.4
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 7.3e-103 378.3 242 79.3
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 7.3e-103 378.3 478 55.6
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.6e-102 375.9 229 78.6
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.4e-101 374.0 513 49.9
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 4.9e-99 365.5 408 58.6
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.6e-97 360.5 248 72.2
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.1e-96 355.5 225 75.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.7e-94 349.4 228 71.9
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.7e-94 349.4 228 71.9
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 6.2e-94 348.6 228 73.7
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 6.9e-93 345.1 436 50.9
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 2.1e-89 333.6 261 88.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 6.0e-89 332.0 393 56.5
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 1.6e-81 307.4 388 59.0
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.5e-76 289.3 154 84.4
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-71 274.2 145 85.5
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.0e-71 273.9 204 68.6
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 2.9e-67 260.0 314 60.5
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.9e-64 249.6 159 72.3
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 5.1e-64 249.2 359 54.9
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 3.1e-61 240.0 350 55.4
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.2e-60 238.0 258 51.2
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 5.9e-60 235.7 226 50.0
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 7.7e-60 235.3 211 55.0
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 9.4e-58 228.4 143 80.4
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 1.6e-57 227.6 146 75.3
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 8.2e-54 215.3 277 56.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.4e-53 214.5 173 64.7
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 4.1e-53 213.0 311 58.5
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 2.0e-52 210.7 325 58.2
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 4.2e-50 203.0 371 49.9
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 7.2e-50 202.2 98 94.9
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 8.0e-49 198.7 347 56.2
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 4.0e-48 196.4 114 79.8
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.9e-42 177.6 92 83.7
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 4.2e-42 176.4 101 81.2
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 6.8e-40 169.1 325 51.4
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.2e-39 168.3 96 83.3
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.3e-38 164.9 96 80.2
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.3e-38 162.2 130 58.5
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 7.7e-36 155.6 84 83.3
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 8.6e-35 152.1 83 81.9
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 5.2e-32 142.9 80 85.0
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.4e-31 140.2 85 80.0
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 5.7e-31 139.4 292 50.0
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.3e-30 138.3 80 83.8
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 1.1e-29 135.2 113 69.9
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 3.0e-27 127.1 79 74.7
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.6e-23 114.0 83 69.9
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.4e-21 108.2 78 73.1
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 6.0e-20 102.8 74 67.6
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.1e-18 98.6 241 52.3
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.5e-18 98.2 60 78.3
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.9e-18 97.8 260 47.7
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.3e-18 97.1 244 50.4
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 3.3e-18 97.1 68 64.7
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.7e-17 93.2 219 47.9
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.6e-15 87.4 299 46.2
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.7e-14 84.7 61 62.3
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 6.6e-11 72.8 43 79.1


User provided reference genes

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