Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p42180 Brassica napus HOM05D011688 ORTHO05D016088 1.1e-75 286.6 145 100.0
C02p49280 Brassica napus HOM05D011688 ORTHO05D016088 6.6e-65 250.8 140 93.6
C09p10010 Brassica napus HOM05D011688 ORTHO05D016088 9.9e-53 210.3 110 96.4
C04p60030 Brassica napus HOM05D011688 ORTHO05D016088 2.9e-52 208.8 110 93.6
BolC8t50660H Brassica oleracea HOM05D011688 ORTHO05D016088 1.4e-51 206.5 140 82.1
C04p24320 Brassica napus HOM05D011688 ORTHO05D016088 2.8e-39 165.6 90 95.6
BolC4t22733H Brassica oleracea HOM05D011688 ORTHO05D021812 3.1e-38 162.2 140 69.3
C09p16910 Brassica napus HOM05D000274 ORTHO05D021812 4.0e-38 161.8 196 55.6
BolC4t22708H Brassica oleracea HOM05D011688 ORTHO05D021812 4.0e-38 161.8 140 68.6
BolC1t03266H Brassica oleracea HOM05D011688 ORTHO05D016088 3.4e-37 158.7 110 79.1
BolC4t27506H Brassica oleracea HOM05D011688 ORTHO05D016088 7.6e-37 157.5 110 78.2
BolC9t54588H Brassica oleracea HOM05D000274 ORTHO05D006767 8.4e-36 154.1 214 52.3
BcaC04g22665 Brassica carinata HOM05D000274 ORTHO05D006767 4.2e-27 125.2 68 94.1
BcaB06g28460 Brassica carinata HOM05D011688 ORTHO05D021812 7.1e-27 124.4 63 96.8
C03p17260 Brassica napus HOM05D011688 ORTHO05D021812 2.1e-26 122.9 63 96.8
BcaC04g23296 Brassica carinata HOM05D011688 ORTHO05D016088 6.2e-23 111.3 113 57.5
Aa31LG1G2210 Aethionema arabicum HOM05D000274 ORTHO05D006767 5.8e-21 104.8 118 55.9
BcaC05g25194 Brassica carinata HOM05D000274 ORTHO05D006767 1.3e-20 103.6 118 55.9
Thhalv10008424m.g Eutrema salsugineum HOM05D000274 ORTHO05D006767 1.3e-20 103.6 118 55.9
Sp1g11010 Schrenkiella parvula HOM05D000274 ORTHO05D006767 1.7e-20 103.2 118 55.9
C05p10790 Brassica napus HOM05D000274 ORTHO05D006767 3.8e-20 102.1 118 55.1
BolC5t29821H Brassica oleracea HOM05D000274 ORTHO05D006767 3.8e-20 102.1 118 55.1
AL1G23740 Arabidopsis lyrata HOM05D000274 ORTHO05D006767 2.5e-19 99.4 118 53.4
AT1G12410 Arabidopsis thaliana HOM05D000274 ORTHO05D006767 2.5e-19 99.4 118 53.4
BcaC07g41702 Brassica carinata HOM05D000274 ORTHO05D006767 5.5e-19 98.2 118 54.2
A06p09220 Brassica napus HOM05D000274 ORTHO05D006767 5.5e-19 98.2 118 54.2
BraA06t24108Z Brassica rapa HOM05D000274 ORTHO05D006767 5.5e-19 98.2 118 54.2
BraA07t27925Z Brassica rapa HOM05D000274 ORTHO05D006767 5.5e-19 98.2 153 46.4
BraA09t41734Z Brassica rapa HOM05D000274 ORTHO05D006767 5.5e-19 98.2 118 54.2
BolC4t23601H Brassica oleracea HOM05D011688 ORTHO05D016088 7.1e-19 97.8 53 92.5
Carub.0001s1206 Capsella rubella HOM05D000274 ORTHO05D006767 7.1e-19 97.8 118 53.4
CARHR012700 Cardamine hirsuta HOM05D000274 ORTHO05D006767 7.1e-19 97.8 118 52.5
THA.LOC104818350 Tarenaya hassleriana HOM05D000274 ORTHO05D006767 6.7e-17 91.3 118 50.0
C08p47410 Brassica napus HOM05D000274 ORTHO05D006767 8.7e-17 90.9 113 53.1
BolC8t52281H Brassica oleracea HOM05D000274 ORTHO05D006767 8.7e-17 90.9 113 53.1
Oeu025551.1 Olea europaea HOM05D000274 ORTHO05D006767 1.5e-16 90.1 118 50.0
Nitab4.5_0000439g0150 Nicotiana tabacum HOM05D000274 ORTHO05D006767 2.5e-16 89.4 118 49.2
Nitab4.5_0005241g0020 Nicotiana tabacum HOM05D000274 ORTHO05D006767 2.5e-16 89.4 118 49.2
Peaxi162Scf00271g00031 Petunia axillaris HOM05D000274 ORTHO05D006767 2.5e-16 89.4 118 50.0
PGR004G1395 Punica granatum HOM05D000274 ORTHO05D006767 3.3e-16 89.0 118 48.3
EL10Ac5g12635 Beta vulgaris HOM05D000274 ORTHO05D006767 5.7e-16 88.2 115 49.6
Ah.12g058120 Amaranthus hybridus HOM05D000274 ORTHO05D006767 9.7e-16 87.4 101 51.5
MSTRG.1931 Avicennia marina HOM05D000274 ORTHO05D006767 9.7e-16 87.4 129 45.7
Cpa.g.sc29.73 Carica papaya HOM05D000274 ORTHO05D006767 9.7e-16 87.4 118 48.3
SalBow6G2249 Salvia bowleyana HOM05D000274 ORTHO05D006767 9.7e-16 87.4 118 47.5
AUR62010522 Chenopodium quinoa HOM05D000274 ORTHO05D006767 1.3e-15 87.0 118 47.5
AUR62017375 Chenopodium quinoa HOM05D000274 ORTHO05D006767 1.3e-15 87.0 118 47.5
CAN.G630.55 Capsicum annuum HOM05D000274 ORTHO05D006767 2.2e-15 86.3 101 50.5
CiPaw.12G103600 Carya illinoinensis HOM05D000274 ORTHO05D006767 2.2e-15 86.3 127 44.9
C06p36460 Brassica napus HOM05D011688 ORTHO05D103822 2.8e-15 85.9 135 43.0
Lsat_1_v5_gn_3_3401 Lactuca sativa HOM05D000274 ORTHO05D006767 2.8e-15 85.9 117 47.0
Lj4g0011320 Lotus japonicus HOM05D000274 ORTHO05D006767 2.8e-15 85.9 127 44.1
MD06G1063900 Malus domestica HOM05D000274 ORTHO05D006767 2.8e-15 85.9 101 51.5
PSO063G2753 Papaver somniferum HOM05D000274 ORTHO05D006767 2.8e-15 85.9 101 50.5
PSO782G2278 Papaver somniferum HOM05D000274 ORTHO05D006767 2.8e-15 85.9 101 50.5
Thecc.03G263300 Theobroma cacao HOM05D000274 ORTHO05D006767 2.8e-15 85.9 118 48.3
A07p01340 Brassica napus HOM05D000274 ORTHO05D021812 3.7e-15 85.5 44 93.2
CANSAT21G0895 Cannabis sativa HOM05D000274 ORTHO05D006767 3.7e-15 85.5 127 44.9
Gohir.A12G222000 Gossypium hirsutum HOM05D000274 ORTHO05D006767 3.7e-15 85.5 118 47.5
Gohir.D12G224500 Gossypium hirsutum HOM05D000274 ORTHO05D006767 3.7e-15 85.5 118 47.5
Gorai.008G240600 Gossypium raimondii HOM05D000274 ORTHO05D006767 3.7e-15 85.5 118 47.5
MD04G1077600 Malus domestica HOM05D000274 ORTHO05D006767 3.7e-15 85.5 101 51.5
Sc01g0009140 Simmondsia chinensis HOM05D000274 ORTHO05D006767 3.7e-15 85.5 129 45.7
CSS0003342 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 4.8e-15 85.1 118 47.5
TWI81G0936 Tripterygium wilfordii HOM05D000274 ORTHO05D006767 4.8e-15 85.1 122 45.9
ECA246G0641 Erigeron canadensis HOM05D000274 ORTHO05D006767 6.3e-15 84.7 118 46.6
Migut.A00848 Erythranthe guttata HOM05D000274 ORTHO05D006767 6.3e-15 84.7 101 51.5
HanXRQChr06g0164721 Helianthus annuus HOM05D000274 ORTHO05D006767 6.3e-15 84.7 118 46.6
Lalb_Chr05g0225301 Lupinus albus HOM05D000274 ORTHO05D006767 6.3e-15 84.7 127 44.9
RcHm_v2.0_Chr7g0201061 Rosa chinensis HOM05D000274 ORTHO05D006767 6.3e-15 84.7 101 50.5
CSS0013233 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 8.2e-15 84.3 118 48.3
Cfa012030 Carpinus fangiana HOM05D000274 ORTHO05D006767 8.2e-15 84.3 101 51.5
CDE08G0290 Ceratophyllum demersum HOM05D000274 ORTHO05D006767 8.2e-15 84.3 118 45.8
HanXRQChr17g0550501 Helianthus annuus HOM05D000274 ORTHO05D006767 8.2e-15 84.3 118 45.8
Prupe.5G081300 Prunus persica HOM05D000274 ORTHO05D006767 1.1e-14 84.0 101 50.5
Cc08_g13400 Coffea canephora HOM05D000274 ORTHO05D006767 1.4e-14 83.6 129 46.5
QL12p015358 Quercus lobata HOM05D000274 ORTHO05D006767 1.4e-14 83.6 126 44.4
FvH4_5g00850 Fragaria vesca HOM05D000274 ORTHO05D006767 1.8e-14 83.2 101 49.5
FAN04G3158 Fragaria x ananassa HOM05D000274 ORTHO05D006767 1.8e-14 83.2 101 49.5
FAN08G2422 Fragaria x ananassa HOM05D000274 ORTHO05D006767 1.8e-14 83.2 101 49.5
FAN18G2275 Fragaria x ananassa HOM05D000274 ORTHO05D006767 1.8e-14 83.2 101 49.5
unitig_52.g17499 Utricularia gibba HOM05D000274 ORTHO05D006767 4.1e-14 82.0 118 47.5
Atru.chr9.1459 Acer truncatum HOM05D000274 ORTHO05D006767 5.3e-14 81.6 127 44.1
ClCG01G003570 Citrullus lanatus HOM05D000274 ORTHO05D006767 5.3e-14 81.6 127 43.3
Phvul.003G215800 Phaseolus vulgaris HOM05D000274 ORTHO05D006767 6.9e-14 81.3 101 49.5
MELO3C005589.2 Cucumis melo HOM05D000274 ORTHO05D006767 9.0e-14 80.9 101 49.5
Gohir.A08G174700 Gossypium hirsutum HOM05D000274 ORTHO05D006767 9.0e-14 80.9 154 40.9
TAR375G0199 Trochodendron aralioides HOM05D000274 ORTHO05D006767 1.2e-13 80.5 118 45.8
arahy.Tifrunner.gnm1.ann1.6KUP6V Arachis hypogaea HOM05D000274 ORTHO05D006767 1.5e-13 80.1 101 47.5
BolC4t22697H Brassica oleracea HOM05D011688 ORTHO05D016088 1.5e-13 80.1 45 93.3
arahy.Tifrunner.gnm1.ann1.U20N0A Arachis hypogaea HOM05D000274 ORTHO05D006767 2.0e-13 79.7 127 41.7
CSS0046106 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D006767 2.0e-13 79.7 118 46.6
Ciclev10021577m.g Citrus clementina HOM05D000274 ORTHO05D006767 2.0e-13 79.7 101 48.5
MBI04_g35280_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 2.6e-13 79.3 128 43.8
Glyma.05G053600 Glycine max HOM05D000274 ORTHO05D006767 3.4e-13 79.0 127 42.5
HanXRQChr10g0284571 Helianthus annuus HOM05D000555 ORTHO05D000646 7.7e-13 77.8 101 46.5
TAR626G1468 Trochodendron aralioides HOM05D000274 ORTHO05D006767 7.7e-13 77.8 118 44.9
VMungo0251G1701 Vigna mungo HOM05D000274 ORTHO05D006767 7.7e-13 77.8 99 48.5
DCAR_008450 Daucus carota HOM05D000274 ORTHO05D006767 1.0e-12 77.4 118 44.9
Glyma.17G136100 Glycine max HOM05D000274 ORTHO05D006767 1.7e-12 76.6 127 41.7
Potri.001G115900 Populus trichocarpa HOM05D000274 ORTHO05D006767 2.2e-12 76.3 118 44.1
Sopen08g027970 Solanum pennellii HOM05D000274 ORTHO05D006767 2.2e-12 76.3 101 47.5
ATR0810G160 Amborella trichopoda HOM05D000274 ORTHO05D006767 2.9e-12 75.9 128 42.2
PGSC0003DMG400003952 Solanum tuberosum HOM05D000274 ORTHO05D006767 2.9e-12 75.9 101 47.5
arahy.Tifrunner.gnm1.ann1.6QW8CL Arachis hypogaea HOM05D000274 ORTHO05D006767 3.8e-12 75.5 127 40.2
Sabra01G0089000 Salix brachista HOM05D000274 ORTHO05D006767 3.8e-12 75.5 118 44.1
Solyc08g079620.3 Solanum lycopersicum HOM05D000274 ORTHO05D006767 5.0e-12 75.1 101 46.5
Manes.01G071900 Manihot esculenta HOM05D000274 ORTHO05D006767 6.5e-12 74.7 127 41.7
Medtr4g102000 Medicago truncatula HOM05D000274 ORTHO05D006767 8.5e-12 74.3 131 38.9
CsaV3_5G003660 Cucumis sativus L. HOM05D000274 ORTHO05D006767 2.5e-11 72.8 101 45.5
Ca_12287_v3 Cicer arietinum L. HOM05D000274 ORTHO05D006767 3.2e-11 72.4 101 44.6
Duzib084G0200 Durio zibethinus HOM05D000274 ORTHO05D006767 5.5e-11 71.6 93 47.3
arahy.Tifrunner.gnm1.ann1.LKJZ2T Arachis hypogaea HOM05D000274 ORTHO05D006767 2.7e-10 69.3 127 38.6
AagrBONN_evm.TU.Sc2ySwM_117.489 Anthoceros agrestis HOM05D000274 ORTHO05D006767 6.1e-10 68.2 102 45.1
A09p63870 Brassica napus HOM05D000274 ORTHO05D006767 7.9e-10 67.8 94 48.9
Pp3c12_2930 Physcomitrium patens HOM05D000274 ORTHO05D006767 1.0e-09 67.4 102 42.2
Mapoly0213s0011 Marchantia polymorpha HOM05D000274 ORTHO05D006767 1.4e-09 67.0 126 40.5
Pp3c3_12310 Physcomitrium patens HOM05D000274 ORTHO05D006767 1.8e-09 66.6 100 42.0
SMO134G0269 Selaginella moellendorffii HOM05D000274 ORTHO05D006767 2.3e-09 66.2 126 37.3
HanXRQChr15g0489441 Helianthus annuus HOM05D000274 ORTHO05D006767 6.7e-09 64.7 109 38.5
CBR_g23029 Chara braunii HOM05D000274 ORTHO05D006767 8.8e-09 64.3 91 45.1
COL.COLO4_23852 Corchorus olitorius HOM05D000274 ORTHO05D006767 1.1e-08 63.9 94 44.7
Eucgr.E00484 Eucalyptus grandis HOM05D000274 ORTHO05D006767 1.1e-08 63.9 44 70.5
Lj2A206T34 Lonicera japonica HOM05D000274 ORTHO05D006767 2.5e-08 62.8 91 40.7
CBR_g8944 Chara braunii HOM05D000274 ORTHO05D006767 4.3e-08 62.0 91 42.9
Sed0011540 Sechium edule HOM05D000274 ORTHO05D006767 5.7e-08 61.6 46 63.0
GSVIVG01019939001 Vitis vinifera HOM05D000274 ORTHO05D006767 1.3e-07 60.5 46 63.0
Os06g0136800 Oryza sativa ssp. japonica HOM05D000274 ORTHO05D006767 2.2e-07 59.7 128 35.9
MBI13_g00270_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D006767 3.1e-06 55.8 110 36.4
DCAR_006797 Daucus carota HOM05D000274 ORTHO05D006767 6.9e-06 54.7 46 58.7
Duzib068G0042 Durio zibethinus HOM05D000274 ORTHO05D006767 6.9e-06 54.7 88 39.8


User provided reference genes

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