Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 2.6e-310 1068.1 645 100.0
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 4.2e-305 1050.8 637 99.8
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 9.5e-273 943.3 579 100.0
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 1.9e-249 865.9 582 93.1
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 4.3e-249 864.8 582 93.0
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 4.2e-228 795.0 585 77.1
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 6.1e-211 738.0 606 71.6
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.7e-181 640.2 611 68.9
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 3.0e-178 629.4 611 60.7
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 1.1e-172 610.9 611 60.1
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 1.5e-172 610.5 605 60.5
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 5.2e-170 602.1 612 65.2
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 3.9e-149 532.7 622 52.9
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.5e-108 397.9 638 43.9
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.9e-108 397.5 652 43.6
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 1.0e-85 322.0 647 36.8
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.4e-85 321.6 654 37.5
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 3.9e-85 320.1 657 40.6
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.7e-83 314.7 654 36.7
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 1.7e-83 314.7 654 36.7
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 4.8e-83 313.2 652 40.6
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 4.8e-83 313.2 624 37.8
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 1.4e-82 311.6 644 37.0
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.2e-81 308.5 655 36.5
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 3.8e-80 303.5 658 36.2
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.1e-79 302.0 659 39.6
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 3.6e-78 297.0 632 37.0
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 8.0e-78 295.8 623 36.8
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 6.7e-77 292.7 682 34.9
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.0e-76 291.2 659 34.6
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 2.0e-76 291.2 683 34.1
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 5.7e-76 289.7 627 35.2
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 7.4e-76 289.3 639 34.7
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.7e-75 288.1 703 34.1
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 2.2e-75 287.7 702 33.8
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 3.7e-75 287.0 650 43.7
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 5.3e-74 283.1 704 33.0
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 9.1e-74 282.3 693 33.9
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 2.0e-73 281.2 637 34.4
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 4.5e-73 280.0 634 35.0
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 1.0e-72 278.9 714 33.3
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 1.3e-72 278.5 630 35.2
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 3.8e-72 276.9 618 44.2
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 1.5e-71 275.0 656 36.4
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.9e-71 274.6 716 38.7
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 1.9e-71 274.6 602 39.5
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 4.7e-70 270.0 662 41.7
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 8.0e-70 269.2 626 37.7
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 2.3e-69 267.7 628 36.3
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 3.0e-69 267.3 596 35.7
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 5.2e-69 266.5 703 32.0
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 5.2e-69 266.5 710 32.7
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 4.4e-68 263.5 603 34.8
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.3e-67 261.9 696 33.0
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 1.7e-67 261.5 614 34.5
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 1.8e-66 258.1 587 34.4
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 9.1e-66 255.8 625 40.5
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 2.0e-65 254.6 694 31.1
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 2.7e-65 254.2 615 34.5
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 3.5e-65 253.8 628 32.6
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 7.7e-65 252.7 666 31.5
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 2.5e-63 247.7 714 38.8
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 2.5e-63 247.7 616 35.7
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 3.6e-62 243.8 606 40.9
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 6.8e-61 239.6 680 30.4
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 2.4e-58 231.1 637 33.1
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 2.4e-58 231.1 608 39.3
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 5.9e-57 226.5 704 30.0
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 1.2e-54 218.8 613 31.8
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.1e-54 218.0 610 32.3
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.7e-54 216.9 622 32.0
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 6.1e-54 216.5 304 44.7
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 2.3e-53 214.5 617 31.3
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 3.0e-53 214.2 312 43.3
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 1.2e-52 212.2 624 31.7
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.6e-52 211.1 644 30.9
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 2.2e-51 208.0 300 46.0
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.8e-51 207.6 616 31.8
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.4e-50 205.3 610 34.1
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 3.1e-50 204.1 315 44.8
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 5.4e-50 203.4 629 28.3
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 2.3e-48 198.0 608 31.1
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 8.6e-48 196.1 629 30.4
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 1.5e-47 195.3 714 30.4
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.9e-47 194.9 579 29.2
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 3.3e-47 194.1 602 30.7
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 4.3e-47 193.7 314 41.4
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 7.3e-47 193.0 309 41.7
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 6.1e-46 189.9 183 54.6
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.8e-45 188.3 258 42.6
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 5.2e-45 186.8 675 33.3
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 2.6e-44 184.5 628 30.6
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 3.4e-44 184.1 353 39.4
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 1.7e-43 181.8 605 28.9
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 4.9e-43 180.3 360 36.7
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 4.9e-43 180.3 646 27.6
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 6.4e-43 179.9 514 36.6
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 3.2e-42 177.6 594 28.5
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 5.4e-42 176.8 597 34.7
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 2.5e-39 167.9 192 49.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 4.3e-39 167.2 618 27.0
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 3.4e-36 157.5 296 38.2
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.1e-32 143.7 177 50.3
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.5e-31 142.1 87 75.9
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 7.3e-31 139.8 602 26.7
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 2.1e-30 138.3 194 43.3
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 3.6e-30 137.5 80 80.0
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 2.3e-29 134.8 182 42.3
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 5.2e-29 133.7 672 24.1
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 4.4e-28 130.6 291 36.8
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 4.6e-25 120.6 420 29.0
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 1.3e-24 119.0 474 27.6
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 5.6e-23 113.6 162 45.1
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 1.1e-21 109.4 314 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.8e-20 103.6 77 58.4
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 6.4e-19 100.1 85 54.1
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 4.2e-18 97.4 308 30.8
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 2.1e-17 95.1 177 38.4
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 4.3e-15 87.4 144 41.7
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.5e-12 79.0 211 34.6
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 1.6e-09 68.9 186 35.5
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 7.8e-09 66.6 201 33.8
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 2.3e-08 65.1 85 37.6
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 9.6e-07 59.7 210 28.1
SMO351G0024 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 2.1e-06 58.5 51 54.9


User provided reference genes

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