Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p40370 Brassica napus HOM05D021081 ORTHO05D002799 1.3e-105 386.3 190 100.0
BcaC02g09238 Brassica carinata HOM05D021081 ORTHO05D018423 2.1e-87 325.9 190 86.3
BcaC02g09231 Brassica carinata HOM05D021081 ORTHO05D032035 2.0e-77 292.7 180 81.1
C04p40290 Brassica napus HOM05D021081 ORTHO05D032035 4.4e-77 291.6 180 80.0
BolC4t25609H Brassica oleracea HOM05D021081 ORTHO05D032035 4.4e-77 291.6 180 80.0
BcaC02g09236 Brassica carinata HOM05D021081 ORTHO05D094392 8.6e-65 250.8 127 96.1
CARHR167440 Cardamine hirsuta HOM05D001456 ORTHO05D031422 3.8e-12 75.9 136 33.1
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.6e-10 69.3 190 25.8
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.6e-10 69.3 161 28.0
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 7.9e-10 68.2 167 27.5
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.4e-09 67.4 163 28.8
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 3.0e-09 66.2 163 27.0
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 5.1e-09 65.5 141 30.5
Solyc02g088880.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 5.1e-09 65.5 165 28.5
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 6.7e-09 65.1 61 41.0
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 8.8e-09 64.7 141 30.5
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.1e-08 64.3 182 26.4
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.1e-08 64.3 162 26.5
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 1.5e-08 63.9 168 25.6
PGSC0003DMG400001458 Solanum tuberosum HOM05D001456 ORTHO05D002799 2.0e-08 63.5 167 27.5
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 2.6e-08 63.2 67 38.8
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 2.6e-08 63.2 118 33.1
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 2.6e-08 63.2 118 33.1
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 2.6e-08 63.2 118 33.1
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 2.6e-08 63.2 121 31.4
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 3.3e-08 62.8 158 27.2
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 3.3e-08 62.8 144 30.6
CiPaw.08G083800 Carya illinoinensis HOM05D001456 ORTHO05D002799 4.4e-08 62.4 58 41.4
Peaxi162Scf00166g00428 Petunia axillaris HOM05D001456 ORTHO05D002799 4.4e-08 62.4 149 28.9
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 4.4e-08 62.4 152 29.6
AT3G56730 Arabidopsis thaliana HOM05D011241 ORTHO05D018423 5.7e-08 62.0 152 29.6
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 5.7e-08 62.0 64 34.4
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 5.7e-08 62.0 157 27.4
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 7.4e-08 61.6 161 26.7
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 7.4e-08 61.6 62 40.3
Aa31LG11G2180 Aethionema arabicum HOM05D001456 ORTHO05D002799 9.7e-08 61.2 162 25.9
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 9.7e-08 61.2 56 41.1
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 9.7e-08 61.2 56 41.1
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 9.7e-08 61.2 56 41.1
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 9.7e-08 61.2 158 27.8
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 1.3e-07 60.8 58 41.4
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 1.3e-07 60.8 164 25.6
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 1.3e-07 60.8 156 28.2
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.7e-07 60.5 158 27.2
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 1.7e-07 60.5 118 32.2
BraA02t09090Z Brassica rapa HOM05D001456 ORTHO05D014991 1.7e-07 60.5 166 27.7
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 1.7e-07 60.5 118 32.2
CARHR288870 Cardamine hirsuta HOM05D011241 ORTHO05D018423 1.7e-07 60.5 139 25.9
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.7e-07 60.5 163 26.4
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 2.2e-07 60.1 64 34.4
A02p41490 Brassica napus HOM05D001456 ORTHO05D014991 2.2e-07 60.1 159 28.3
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 2.2e-07 60.1 125 31.2
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.2e-07 60.1 169 24.9
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 2.2e-07 60.1 159 27.7
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 2.2e-07 60.1 160 24.4
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 2.2e-07 60.1 160 24.4
Potri.013G003200 Populus trichocarpa HOM05D001456 ORTHO05D002799 2.2e-07 60.1 159 26.4
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 2.2e-07 60.1 152 30.3
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 2.8e-07 59.7 165 24.8
Ah.11g045840 Amaranthus hybridus HOM05D001456 ORTHO05D002799 2.8e-07 59.7 165 26.1
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 2.8e-07 59.7 64 34.4
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 2.8e-07 59.7 64 34.4
Ciclev10003599m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.8e-07 59.7 161 25.5
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 3.7e-07 59.3 115 33.0
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 3.7e-07 59.3 125 31.2
Carub.0005s2878 Capsella rubella HOM05D001456 ORTHO05D012062 3.7e-07 59.3 142 31.0
Sp2g24430 Schrenkiella parvula HOM05D001456 ORTHO05D002799 3.7e-07 59.3 53 43.4
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 3.7e-07 59.3 52 44.2
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 3.7e-07 59.3 164 25.0
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 4.8e-07 58.9 160 26.9
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 4.8e-07 58.9 62 33.9
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 4.8e-07 58.9 115 32.2
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 4.8e-07 58.9 62 33.9
Hma1.2p1_0759F.1_g213950 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 4.8e-07 58.9 160 24.4
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 4.8e-07 58.9 161 26.1
QL12p034495 Quercus lobata HOM05D001456 ORTHO05D002799 4.8e-07 58.9 160 26.2
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 6.3e-07 58.5 155 25.2
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 6.3e-07 58.5 116 30.2
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 6.3e-07 58.5 116 30.2
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 6.3e-07 58.5 157 26.1
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 6.3e-07 58.5 157 26.8
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 6.3e-07 58.5 157 26.8
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 6.3e-07 58.5 190 23.7
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 6.3e-07 58.5 62 33.9
Sopen02g033580 Solanum pennellii HOM05D000002 ORTHO05D000001 6.3e-07 58.5 49 44.9
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 6.3e-07 58.5 162 25.3
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 8.2e-07 58.2 167 24.6
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 8.2e-07 58.2 158 25.3
CAN.G497.101 Capsicum annuum HOM05D001456 ORTHO05D002799 1.1e-06 57.8 158 27.2
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.1e-06 57.8 158 26.6
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.1e-06 57.8 161 26.1
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 1.1e-06 57.8 58 39.7
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 1.1e-06 57.8 52 42.3
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.4e-06 57.4 116 29.3
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 1.4e-06 57.4 118 30.5
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.4e-06 57.4 163 25.8
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 1.4e-06 57.4 163 25.8
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.4e-06 57.4 165 24.2
Thhalv10022152m.g Eutrema salsugineum HOM05D001456 ORTHO05D015898 1.4e-06 57.4 116 30.2
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 1.4e-06 57.4 162 24.1
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 1.8e-06 57.0 165 24.2
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 1.8e-06 57.0 165 24.2
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.8e-06 57.0 56 39.3
FAN19G2030 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.8e-06 57.0 162 24.1
FAN26G2486 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.8e-06 57.0 162 24.1
PGSC0003DMG400001457 Solanum tuberosum HOM05D001456 ORTHO05D002799 1.8e-06 57.0 52 42.3
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 1.8e-06 57.0 165 24.8
AL5G38740 Arabidopsis lyrata HOM05D016723 ORTHO05D031422 2.4e-06 56.6 96 36.5
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 2.4e-06 56.6 167 24.6
AL5G30040 Arabidopsis lyrata HOM05D001456 ORTHO05D018423 3.1e-06 56.2 143 24.5
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 3.1e-06 56.2 53 39.6
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 3.1e-06 56.2 161 24.8
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 3.1e-06 56.2 160 25.6
Aa31LG11G2170 Aethionema arabicum HOM05D001456 ORTHO05D002799 4.1e-06 55.8 108 31.5
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 4.1e-06 55.8 53 39.6
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 4.1e-06 55.8 163 23.9
DCAR_025306 Daucus carota HOM05D001456 ORTHO05D002799 4.1e-06 55.8 165 24.8
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 4.1e-06 55.8 159 27.7
Gohir.A11G103800 Gossypium hirsutum HOM05D001456 ORTHO05D002799 4.1e-06 55.8 158 25.3
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 4.1e-06 55.8 157 26.8
Sabra13G0002700 Salix brachista HOM05D001456 ORTHO05D002799 4.1e-06 55.8 159 25.2
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 4.1e-06 55.8 163 25.8
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 4.1e-06 55.8 163 25.8
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 4.1e-06 55.8 190 23.7
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 4.1e-06 55.8 164 24.4
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 5.3e-06 55.5 164 24.4
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 5.3e-06 55.5 163 24.5
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 5.3e-06 55.5 157 25.5
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.3e-06 55.5 52 38.5
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 5.3e-06 55.5 158 25.3
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 7.0e-06 55.1 160 24.4
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 7.0e-06 55.1 160 24.4
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 7.0e-06 55.1 160 25.0
EL10As5g23613 Beta vulgaris HOM05D001456 ORTHO05D002799 7.0e-06 55.1 158 25.9
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 7.0e-06 55.1 67 31.3
Cpa.g.sc519.4 Carica papaya HOM05D001456 ORTHO05D002799 7.0e-06 55.1 167 24.6
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 7.0e-06 55.1 159 25.2
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 7.0e-06 55.1 158 26.6
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 9.1e-06 54.7 117 30.8
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 9.1e-06 54.7 164 24.4
CARHR274950 Cardamine hirsuta HOM05D001456 ORTHO05D002799 9.1e-06 54.7 53 43.4
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 9.1e-06 54.7 161 24.8
HanXRQChr09g0270991 Helianthus annuus HOM05D001456 ORTHO05D002799 9.1e-06 54.7 61 34.4
Nn3g21913 Nelumbo nucifera HOM05D001456 ORTHO05D002799 9.1e-06 54.7 157 26.1
Potri.013G003301 Populus trichocarpa HOM05D001456 ORTHO05D002799 9.1e-06 54.7 54 37.0
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 9.1e-06 54.7 157 24.8


User provided reference genes

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