Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39770 Brassica napus HOM05D003364 ORTHO05D003795 2.0e-93 345.9 197 100.0
BolC4t25549H Brassica oleracea HOM05D003364 ORTHO05D003795 8.4e-55 217.6 128 100.0
BcaC02g09182 Brassica carinata HOM05D003364 ORTHO05D003795 3.9e-52 208.8 128 97.7
BcaB02g08535 Brassica carinata HOM05D003364 ORTHO05D003795 1.1e-51 207.2 128 96.1
A04p06260 Brassica napus HOM05D003364 ORTHO05D003795 1.5e-51 206.8 129 96.1
BraA04t16331Z Brassica rapa HOM05D003364 ORTHO05D003795 1.5e-51 206.8 130 95.4
Sp5g09200 Schrenkiella parvula HOM05D003364 ORTHO05D003795 1.5e-48 196.8 128 86.7
Aa31LG10G8290 Aethionema arabicum HOM05D003364 ORTHO05D003795 1.6e-45 186.8 128 82.8
AL5G34000 Arabidopsis lyrata HOM05D003364 ORTHO05D003795 1.0e-44 184.1 129 83.7
THA.LOC104818582 Tarenaya hassleriana HOM05D003364 ORTHO05D003795 1.3e-44 183.7 128 80.5
Carub.0005s1965 Capsella rubella HOM05D003364 ORTHO05D003795 1.8e-44 183.3 129 82.2
AT3G53120 Arabidopsis thaliana HOM05D003364 ORTHO05D003795 2.3e-44 183.0 129 82.2
Thhalv10017224m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 2.5e-43 179.5 128 78.1
Thhalv10023701m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 2.1e-42 176.4 101 95.0
AT2G36680 Arabidopsis thaliana HOM05D003364 ORTHO05D003795 1.4e-41 173.7 129 77.5
CARHR130970 Cardamine hirsuta HOM05D003364 ORTHO05D003795 5.8e-40 168.3 129 75.2
Thhalv10010721m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 2.9e-39 166.0 128 77.3
AL4G32860 Arabidopsis lyrata HOM05D003364 ORTHO05D003795 2.5e-38 162.9 128 73.4
BraA05t19876Z Brassica rapa HOM05D003364 ORTHO05D003795 2.5e-38 162.9 125 74.4
Sp4g18950 Schrenkiella parvula HOM05D003364 ORTHO05D003795 4.2e-38 162.2 128 71.9
Cpa.g.sc5.126 Carica papaya HOM05D003364 ORTHO05D003795 7.1e-38 161.4 124 71.8
CARHR162970 Cardamine hirsuta HOM05D003364 ORTHO05D003795 1.2e-37 160.6 130 75.4
BcaC02g11785 Brassica carinata HOM05D003364 ORTHO05D003795 2.7e-37 159.5 130 72.3
C04p11370 Brassica napus HOM05D000165 ORTHO05D003795 2.7e-37 159.5 127 76.4
BolC4t22777H Brassica oleracea HOM05D003364 ORTHO05D003795 2.7e-37 159.5 130 72.3
BcaB02g09341 Brassica carinata HOM05D003364 ORTHO05D003795 7.9e-37 157.9 129 70.5
BcaC03g18177 Brassica carinata HOM05D003364 ORTHO05D003795 1.0e-36 157.5 127 73.2
BolC4t22795H Brassica oleracea HOM05D003364 ORTHO05D003795 5.1e-36 155.2 130 71.5
Aa31LG5G21880 Aethionema arabicum HOM05D003364 ORTHO05D003795 3.3e-35 152.5 128 68.8
Dinv37357 Davidia involucrata HOM05D003364 ORTHO05D003795 3.3e-35 152.5 135 65.9
CiPaw.10G002500 Carya illinoinensis HOM05D003364 ORTHO05D003795 9.7e-35 151.0 140 64.3
Carub.0004s1850 Capsella rubella HOM05D003364 ORTHO05D003795 1.6e-34 150.2 129 69.0
Haze_19478 Corylus avellana HOM05D003364 ORTHO05D003795 2.8e-34 149.4 139 63.3
Dinv35835 Davidia involucrata HOM05D003364 ORTHO05D003795 4.8e-34 148.7 134 63.4
QL07p041392 Quercus lobata HOM05D003364 ORTHO05D003795 4.8e-34 148.7 140 64.3
TAR633G2316 Trochodendron aralioides HOM05D003364 ORTHO05D003795 6.3e-34 148.3 139 61.9
GSVIVG01033713001 Vitis vinifera HOM05D003364 ORTHO05D003795 8.2e-34 147.9 139 61.9
Manes.09G048862 Manihot esculenta HOM05D003364 ORTHO05D003795 2.4e-33 146.4 137 62.0
CSS0048678 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 3.1e-33 146.0 139 61.9
Duzib128G0277 Durio zibethinus HOM05D003364 ORTHO05D003795 5.3e-33 145.2 140 61.4
COL.COLO4_22254 Corchorus olitorius HOM05D003364 ORTHO05D003795 1.2e-32 144.1 140 63.6
Thecc.05G075500 Theobroma cacao HOM05D003364 ORTHO05D003795 1.2e-32 144.1 139 61.9
Eucgr.A01593 Eucalyptus grandis HOM05D003364 ORTHO05D003795 2.6e-32 142.9 134 64.9
TWI77G0900 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 3.4e-32 142.5 137 62.8
Potri.006G119200 Populus trichocarpa HOM05D003364 ORTHO05D003795 4.5e-32 142.1 138 63.0
A05p09200 Brassica napus HOM05D003364 ORTHO05D003795 5.9e-32 141.7 160 58.8
TWI74G0085 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 5.9e-32 141.7 137 63.5
CSS0050150 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 1.0e-31 141.0 139 59.0
Prupe.7G123000 Prunus persica HOM05D003364 ORTHO05D003795 2.2e-31 139.8 140 58.6
PGR142G3973 Punica granatum HOM05D003364 ORTHO05D003795 2.2e-31 139.8 135 63.0
QL07p041377 Quercus lobata HOM05D003364 ORTHO05D003795 2.2e-31 139.8 136 62.5
Sc02g0001390 Simmondsia chinensis HOM05D003364 ORTHO05D003795 2.2e-31 139.8 136 61.0
MD12G1102900 Malus domestica HOM05D003364 ORTHO05D003795 2.9e-31 139.4 139 57.6
Sc20g0005750 Simmondsia chinensis HOM05D003364 ORTHO05D003795 2.9e-31 139.4 140 60.0
Potri.016G097000 Populus trichocarpa HOM05D003364 ORTHO05D003795 3.8e-31 139.0 137 62.8
CiPaw.09G005100 Carya illinoinensis HOM05D003364 ORTHO05D003795 5.0e-31 138.7 144 59.0
Gohir.A04G068400 Gossypium hirsutum HOM05D003364 ORTHO05D003795 5.0e-31 138.7 140 60.7
Gohir.D04G106900 Gossypium hirsutum HOM05D003364 ORTHO05D003795 6.5e-31 138.3 140 60.7
Gorai.009G411000 Gossypium raimondii HOM05D003364 ORTHO05D003795 6.5e-31 138.3 140 60.7
EL10As10g23959 Beta vulgaris HOM05D003364 ORTHO05D003795 1.1e-30 137.5 143 59.4
AUR62030232 Chenopodium quinoa HOM05D003364 ORTHO05D003795 1.4e-30 137.1 140 57.9
MELO3C009407.2 Cucumis melo HOM05D003364 ORTHO05D003795 1.4e-30 137.1 113 69.0
Duzib106G1154 Durio zibethinus HOM05D003364 ORTHO05D003795 1.4e-30 137.1 139 58.3
Lj3A995G63 Lonicera japonica HOM05D003364 ORTHO05D003795 1.4e-30 137.1 134 62.7
CsaV3_3G036470 Cucumis sativus L. HOM05D003364 ORTHO05D003795 1.9e-30 136.7 113 69.0
MD14G1097000 Malus domestica HOM05D003364 ORTHO05D003795 1.9e-30 136.7 139 56.8
Actinidia32470 Actinidia chinensis HOM05D003364 ORTHO05D003795 2.5e-30 136.3 133 60.9
Sabra06G0093800 Salix brachista HOM05D003364 ORTHO05D003795 3.2e-30 136.0 128 64.1
Ciclev10009355m.g Citrus clementina HOM05D003364 ORTHO05D003795 5.5e-30 135.2 138 59.4
VMungo1383G1043 Vigna mungo HOM05D003364 ORTHO05D003795 7.2e-30 134.8 132 63.6
Phvul.001G183500 Phaseolus vulgaris HOM05D003364 ORTHO05D003795 9.4e-30 134.4 132 62.9
Gohir.A11G323000 Gossypium hirsutum HOM05D003364 ORTHO05D003795 1.6e-29 133.7 138 60.1
Duzib093G1696 Durio zibethinus HOM05D003364 ORTHO05D003795 2.1e-29 133.3 139 61.9
Manes.08G015900 Manihot esculenta HOM05D003364 ORTHO05D003795 2.1e-29 133.3 145 57.2
Hund12309 Selenicereus undatus HOM05D003364 ORTHO05D003795 2.7e-29 132.9 146 54.1
AUR62040195 Chenopodium quinoa HOM05D003364 ORTHO05D003795 4.6e-29 132.1 141 56.0
Gohir.D11G342100 Gossypium hirsutum HOM05D003364 ORTHO05D003795 4.6e-29 132.1 138 59.4
Gorai.007G372100 Gossypium raimondii HOM05D003364 ORTHO05D003795 4.6e-29 132.1 138 59.4
Ca_08937_v3 Cicer arietinum L. HOM05D003364 ORTHO05D003795 6.1e-29 131.7 130 61.5
Ca_30110_v3 Cicer arietinum L. HOM05D003364 ORTHO05D003795 6.1e-29 131.7 130 61.5
Glyma.03G188100 Glycine max HOM05D003364 ORTHO05D003795 6.1e-29 131.7 132 61.4
Psat3g038040 Pisum sativum HOM05D003364 ORTHO05D003795 6.1e-29 131.7 130 61.5
Sed0015688 Sechium edule HOM05D003364 ORTHO05D003795 6.1e-29 131.7 111 67.6
Sed0022654 Sechium edule HOM05D003364 ORTHO05D003795 6.1e-29 131.7 111 69.4
vmacro07356 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 6.1e-29 131.7 115 65.2
EL10Ac7g16703 Beta vulgaris HOM05D003364 ORTHO05D003795 7.9e-29 131.3 141 54.6
Rhsim04G0138800 Rhododendron simsii HOM05D003364 ORTHO05D003795 1.0e-28 131.0 139 56.8
Nn6g35170 Nelumbo nucifera HOM05D003364 ORTHO05D003795 1.4e-28 130.6 144 57.6
Cc06_g04780 Coffea canephora HOM05D003364 ORTHO05D003795 2.3e-28 129.8 138 58.7
Nitab4.5_0009839g0030 Nicotiana tabacum HOM05D003364 ORTHO05D003795 2.3e-28 129.8 139 58.3
Glyma.19G188300 Glycine max HOM05D003364 ORTHO05D003795 3.0e-28 129.4 132 60.6
Nn2g13901 Nelumbo nucifera HOM05D003364 ORTHO05D003795 3.9e-28 129.0 139 57.6
Aqoxy2G01564 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 5.1e-28 128.6 116 63.8
FAN14G4580 Fragaria x ananassa HOM05D003364 ORTHO05D003795 5.1e-28 128.6 130 60.0
Lj1A203T55 Lonicera japonica HOM05D003364 ORTHO05D003795 5.1e-28 128.6 139 56.1
TAR369G0566 Trochodendron aralioides HOM05D003364 ORTHO05D003795 5.1e-28 128.6 133 58.6
FvH4_6g17210 Fragaria vesca HOM05D003364 ORTHO05D003795 6.7e-28 128.3 130 60.0
RcHm_v2.0_Chr3g0471291 Rosa chinensis HOM05D003364 ORTHO05D003795 6.7e-28 128.3 135 57.0
Migut.F01371 Erythranthe guttata HOM05D003364 ORTHO05D003795 8.8e-28 127.9 134 57.5
Migut.J00476 Erythranthe guttata HOM05D003364 ORTHO05D003795 8.8e-28 127.9 134 58.2
HanXRQChr01g0019311 Helianthus annuus HOM05D003364 ORTHO05D003795 8.8e-28 127.9 111 67.6
AUR62042710 Chenopodium quinoa HOM05D003364 ORTHO05D003795 1.1e-27 127.5 136 56.6
Migut.J00474 Erythranthe guttata HOM05D003364 ORTHO05D003795 1.1e-27 127.5 134 57.5
Medtr7g102780 Medicago truncatula HOM05D003364 ORTHO05D003795 1.1e-27 127.5 107 68.2
Nitab4.5_0005208g0010 Nicotiana tabacum HOM05D003364 ORTHO05D003795 1.1e-27 127.5 139 56.8
Sabra16G0100200 Salix brachista HOM05D003364 ORTHO05D003795 1.5e-27 127.1 130 62.3
Lalb_Chr02g0155361 Lupinus albus HOM05D003364 ORTHO05D003795 2.0e-27 126.7 132 59.8
vmacro23001 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 2.5e-27 126.3 113 65.5
FAN02G0897 Fragaria x ananassa HOM05D003364 ORTHO05D003795 4.3e-27 125.6 130 56.9
vmacro08805 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 5.7e-27 125.2 158 51.3
arahy.Tifrunner.gnm1.ann1.URL2CG Arachis hypogaea HOM05D003364 ORTHO05D003795 7.4e-27 124.8 114 62.3
MBI11_g29030_MAGBIO Magnolia biondii HOM05D003364 ORTHO05D003795 9.7e-27 124.4 117 63.2
Nitab4.5_0000725g0070 Nicotiana tabacum HOM05D003364 ORTHO05D003795 9.7e-27 124.4 139 56.1
HanXRQChr11g0345961 Helianthus annuus HOM05D003364 ORTHO05D003795 1.7e-26 123.6 111 66.7
MSTRG.5787 Avicennia marina HOM05D003364 ORTHO05D003795 2.2e-26 123.2 139 56.1
DCAR_020798 Daucus carota HOM05D003364 ORTHO05D003795 2.8e-26 122.9 139 54.0
Peaxi162Scf00110g00816 Petunia axillaris HOM05D003364 ORTHO05D003795 2.8e-26 122.9 115 62.6
Lj1g0027813 Lotus japonicus HOM05D003364 ORTHO05D003795 6.3e-26 121.7 77 83.1
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 1.1e-25 120.9 140 55.0
Aqoxy5G02878 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 1.8e-25 120.2 116 62.9
TPR.G31682 Trifolium pratense HOM05D003364 ORTHO05D003795 1.8e-25 120.2 131 59.5
Oeu040563.2 Olea europaea HOM05D003364 ORTHO05D003795 5.3e-25 118.6 141 53.9
Peaxi162Scf00146g00018 Petunia axillaris HOM05D003364 ORTHO05D003795 1.2e-24 117.5 115 63.5
Oeu045244.1 Olea europaea HOM05D003364 ORTHO05D003795 1.5e-24 117.1 143 52.4
PSO339G5958 Papaver somniferum HOM05D003364 ORTHO05D003795 1.5e-24 117.1 89 69.7
PSO801G0728 Papaver somniferum HOM05D003364 ORTHO05D003795 1.5e-24 117.1 89 69.7
Os03g0186800 Oryza sativa ssp. japonica HOM05D003364 ORTHO05D003795 5.9e-24 115.2 114 58.8
ECA248G1326 Erigeron canadensis HOM05D003364 ORTHO05D003795 7.7e-24 114.8 135 55.6
HPP92_020787 Vanilla planifolia HOM05D003364 ORTHO05D003795 7.7e-24 114.8 136 53.7
PGSC0003DMG400008590 Solanum tuberosum HOM05D003364 ORTHO05D003795 1.7e-23 113.6 140 54.3
Glyma.13G147900 Glycine max HOM05D003364 ORTHO05D003795 3.8e-23 112.5 77 72.7
Os03g0572300 Oryza sativa ssp. japonica HOM05D003364 ORTHO05D003795 1.1e-22 110.9 113 54.9
Zm00001eb006510 Zea mays HOM05D003364 ORTHO05D003795 2.5e-22 109.8 115 56.5
CDE05G1858 Ceratophyllum demersum HOM05D003364 ORTHO05D003795 3.2e-22 109.4 99 64.6
Lsat_1_v5_gn_1_64020 Lactuca sativa HOM05D003364 ORTHO05D003795 3.2e-22 109.4 110 56.4
unitig_22.g5108 Utricularia gibba HOM05D003364 ORTHO05D003795 3.2e-22 109.4 137 50.4
Glyma.10G063400 Glycine max HOM05D003364 ORTHO05D003795 9.4e-22 107.8 90 65.6
Lsat_1_v5_gn_2_100520 Lactuca sativa HOM05D003364 ORTHO05D003795 1.2e-21 107.5 134 53.7
arahy.Tifrunner.gnm1.ann1.HU14K8 Arachis hypogaea HOM05D003364 ORTHO05D003795 2.1e-21 106.7 95 60.0
arahy.Tifrunner.gnm1.ann1.R92IIS Arachis hypogaea HOM05D003364 ORTHO05D003795 2.1e-21 106.7 95 60.0
CAN.G541.25 Capsicum annuum HOM05D003364 ORTHO05D003795 2.1e-21 106.7 125 55.2
ATR1158G038 Amborella trichopoda HOM05D003364 ORTHO05D003795 2.7e-21 106.3 113 57.5
Solyc10g083780.1 Solanum lycopersicum HOM05D003364 ORTHO05D003795 6.1e-21 105.1 97 61.9
Sopen10g033230 Solanum pennellii HOM05D003364 ORTHO05D003795 6.1e-21 105.1 97 61.9
Solyc10g085810.2 Solanum lycopersicum HOM05D003364 ORTHO05D003795 7.9e-21 104.8 139 50.4
Sopen10g035210 Solanum pennellii HOM05D003364 ORTHO05D003795 7.9e-21 104.8 139 50.4
CDE11G0254 Ceratophyllum demersum HOM05D003364 ORTHO05D003795 2.3e-20 103.2 99 61.6
HanXRQChr13g0400531 Helianthus annuus HOM05D003364 ORTHO05D003795 3.0e-20 102.8 84 66.7
CAN.G729.4 Capsicum annuum HOM05D003364 ORTHO05D003795 8.8e-20 101.3 142 47.9
CSS0013430 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 1.1e-19 100.9 78 67.9
Oeu031866.1 Olea europaea HOM05D003364 ORTHO05D003795 1.1e-19 100.9 172 42.4
Phvul.007G226100 Phaseolus vulgaris HOM05D003364 ORTHO05D003795 1.5e-19 100.5 71 73.2
ClCG10G019650 Citrullus lanatus HOM05D003364 ORTHO05D003795 2.6e-19 99.8 189 40.7
Zm00001eb401560 Zea mays HOM05D003364 ORTHO05D003795 5.7e-19 98.6 113 50.4
ECA233G2861 Erigeron canadensis HOM05D003364 ORTHO05D003795 7.4e-19 98.2 95 60.0
VMungo0720G0068 Vigna mungo HOM05D003364 ORTHO05D003795 1.3e-18 97.4 74 68.9
Psat6g123960 Pisum sativum HOM05D003364 ORTHO05D003795 2.2e-18 96.7 98 60.2
SEGI_00976 Sequoiadendron giganteum HOM05D003364 ORTHO05D003795 2.8e-18 96.3 127 48.0
Lsat_1_v5_gn_6_28160 Lactuca sativa HOM05D003364 ORTHO05D003795 4.8e-18 95.5 79 63.3
Psat6g124000 Pisum sativum HOM05D003364 ORTHO05D003795 1.1e-17 94.4 96 60.4
PSO063G6171 Papaver somniferum HOM05D003364 ORTHO05D003795 2.4e-17 93.2 98 55.1
PSO339G1192 Papaver somniferum HOM05D003364 ORTHO05D003795 3.1e-17 92.8 98 54.1
Oeu023984.1 Olea europaea HOM05D003364 ORTHO05D003795 4.5e-16 89.0 151 41.7
SGA_v2.0_scaffold75G24816 Striga asiatica HOM05D003364 ORTHO05D003795 5.9e-16 88.6 132 47.7
DCAR_017653 Daucus carota HOM05D003364 ORTHO05D003795 2.9e-15 86.3 59 79.7
SalBow3G4042 Salvia bowleyana HOM05D003364 ORTHO05D003795 2.9e-15 86.3 117 49.6
arahy.Tifrunner.gnm1.ann1.PZQ5IT Arachis hypogaea HOM05D003364 ORTHO05D003795 5.0e-15 85.5 84 57.1
Rhsim03G0085800 Rhododendron simsii HOM05D003364 ORTHO05D003795 1.5e-14 84.0 59 76.3
Glyma.20G077501 Glycine max HOM05D003364 ORTHO05D003795 2.5e-14 83.2 104 51.0
SGA_v2.0_scaffold40G15447 Striga asiatica HOM05D003364 ORTHO05D003795 2.5e-14 83.2 113 48.7
MBI19_g12832_MAGBIO Magnolia biondii HOM05D003364 ORTHO05D003795 4.2e-14 82.4 57 75.4
CSS0026446 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 5.5e-14 82.0 58 77.6
PGSC0003DMG400028179 Solanum tuberosum HOM05D003364 ORTHO05D003795 9.4e-14 81.3 100 53.0
Hma1.2p1_0137F.1_g062430 Hydrangea macrophylla HOM05D003364 ORTHO05D003795 1.4e-12 77.4 106 53.8
Mapoly0070s0080 Marchantia polymorpha HOM05D003364 ORTHO05D003795 1.7e-10 70.5 93 45.2
unitig_8.g4120 Utricularia gibba HOM05D003364 ORTHO05D003795 3.7e-10 69.3 103 47.6
CBR_g30234 Chara braunii HOM05D003364 ORTHO05D003795 8.2e-10 68.2 105 39.0
Pp3c2_570 Physcomitrium patens HOM05D003364 ORTHO05D003795 1.2e-08 64.3 99 44.4
SMO147G0421 Selaginella moellendorffii HOM05D003364 ORTHO05D003795 1.6e-08 63.9 59 54.2
SMO144G0012 Selaginella moellendorffii HOM05D003364 ORTHO05D003795 2.0e-08 63.5 59 54.2
Pp3c14_24180 Physcomitrium patens HOM05D003364 ORTHO05D003795 2.2e-07 60.1 108 36.1
Psat4g136360 Pisum sativum HOM05D001184 ORTHO05D003397 2.2e-07 60.1 138 37.7
SMO118G0276 Selaginella moellendorffii HOM05D003364 ORTHO05D003795 8.5e-07 58.2 61 50.8
ATR0661G393 Amborella trichopoda HOM05D003364 ORTHO05D003795 4.2e-06 55.8 121 34.7


User provided reference genes

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