Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.2e-64 248.8 129 100.0
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.2e-64 248.8 129 100.0
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 1.4e-55 219.5 129 90.7
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.5e-28 129.8 91 78.0
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 1.7e-27 126.3 91 75.8
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.7e-27 126.3 91 75.8
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 1.7e-27 126.3 91 75.8
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 2.2e-27 125.9 90 75.6
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.7e-27 125.2 91 74.7
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.6e-25 119.8 90 73.3
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 3.5e-25 118.6 90 72.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 4.5e-25 118.2 90 73.3
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 4.5e-25 118.2 90 73.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.3e-24 116.7 90 71.1
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 2.3e-24 115.9 90 72.2
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.3e-23 111.7 90 68.9
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 7.3e-23 110.9 90 65.6
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.2e-22 110.2 90 64.4
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.1e-22 109.4 90 64.4
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 2.8e-22 109.0 90 65.6
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.8e-22 109.0 90 65.6
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.8e-22 109.0 90 65.6
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.0e-21 107.1 90 64.4
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 1.0e-21 107.1 90 64.4
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.4e-21 106.7 90 63.3
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.8e-21 106.3 90 62.2
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.3e-21 105.9 90 63.3
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 2.3e-21 105.9 90 63.3
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.3e-21 105.9 90 62.2
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.3e-21 105.9 90 62.2
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 3.0e-21 105.5 90 62.2
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.0e-21 105.5 90 63.3
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.0e-21 105.5 90 62.2
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 4.0e-21 105.1 90 62.2
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 4.0e-21 105.1 90 61.1
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 6.8e-21 104.4 90 62.2
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.8e-21 104.4 90 62.2
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 6.8e-21 104.4 90 62.2
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 6.8e-21 104.4 90 61.1
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 6.8e-21 104.4 90 63.3
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 8.9e-21 104.0 90 63.3
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 8.9e-21 104.0 90 57.8
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.5e-20 103.2 90 61.1
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.0e-20 102.8 90 61.1
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 2.0e-20 102.8 90 61.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.0e-20 102.8 92 59.8
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 2.0e-20 102.8 90 58.9
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 2.6e-20 102.4 90 61.1
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 2.6e-20 102.4 90 60.0
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.4e-20 102.1 90 61.1
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.4e-20 101.7 90 62.2
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 5.7e-20 101.3 90 58.9
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 7.5e-20 100.9 90 60.0
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 9.8e-20 100.5 90 57.8
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 9.8e-20 100.5 90 58.9
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.3e-19 100.1 90 60.0
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 1.3e-19 100.1 90 57.8
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.7e-19 99.8 89 58.4
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.7e-19 99.8 90 56.7
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.2e-19 99.4 92 56.5
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.9e-19 99.0 90 56.7
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.9e-19 99.0 90 56.7
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 2.9e-19 99.0 90 58.9
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 2.9e-19 99.0 90 60.0
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 3.7e-19 98.6 92 58.7
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 3.7e-19 98.6 89 58.4
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 3.7e-19 98.6 90 57.8
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 3.7e-19 98.6 90 55.6
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 4.9e-19 98.2 90 57.8
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 6.4e-19 97.8 89 58.4
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.1e-18 97.1 89 58.4
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.1e-18 97.1 89 58.4
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.1e-18 97.1 89 60.7
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 1.1e-18 97.1 90 57.8
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 1.4e-18 96.7 90 56.7
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.4e-18 96.7 90 56.7
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.4e-18 96.7 89 58.4
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.4e-18 96.7 90 55.6
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.1e-18 95.1 90 53.3
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 4.1e-18 95.1 90 53.3
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 4.1e-18 95.1 89 57.3
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.4e-18 94.7 86 59.3
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 5.4e-18 94.7 90 55.6
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 7.0e-18 94.4 80 65.0
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 7.0e-18 94.4 88 55.7
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 7.0e-18 94.4 90 57.8
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 9.2e-18 94.0 131 45.0
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.2e-17 93.6 90 55.6
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 2.0e-17 92.8 90 54.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.0e-17 92.8 88 55.7
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.7e-17 92.4 90 55.6
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 3.5e-17 92.0 89 55.1
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.5e-17 92.0 90 54.4
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 4.6e-17 91.7 90 53.3
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.6e-17 91.7 90 53.3
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.6e-17 91.7 90 53.3
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 4.6e-17 91.7 90 53.3
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 7.8e-17 90.9 90 53.3
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 7.8e-17 90.9 90 52.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.0e-16 90.5 86 57.0
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 1.0e-16 90.5 86 57.0
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.3e-16 90.1 90 52.2
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.7e-16 89.7 90 51.1
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.3e-16 89.4 90 52.2
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.3e-16 89.4 89 51.7
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.3e-16 89.4 92 53.3
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.3e-16 89.4 92 53.3
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 3.0e-16 89.0 80 60.0
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.5e-15 86.7 93 51.6
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.5e-15 85.9 90 51.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.2e-14 83.6 100 48.0
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 1.6e-14 83.2 93 47.3
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.2e-12 77.0 94 47.9
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 1.5e-12 76.6 91 46.2
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 4.4e-12 75.1 70 57.1
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.8e-12 74.7 68 57.4
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 1.7e-11 73.2 74 50.0
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.9e-11 72.4 79 50.6
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 6.4e-11 71.2 92 43.5
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 8.3e-11 70.9 67 53.7
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 2.0e-09 66.2 86 39.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 6.0e-09 64.7 48 66.7
C06p07140 Brassica napus HOM05D005183 ORTHO05D100002 1.0e-08 63.9 34 94.1
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.3e-08 63.5 90 41.1
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 5.0e-08 61.6 37 81.1
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 3.3e-07 58.9 92 39.1
A09p20150 Brassica napus HOM05D001587 ORTHO05D002654 6.2e-06 54.7 63 55.6


User provided reference genes

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