Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.1e-68 262.3 138 100.0
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 8.8e-67 256.9 138 98.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 3.1e-56 221.9 117 100.0
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 3.1e-56 221.9 117 100.0
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-54 216.5 117 97.4
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-48 196.8 117 90.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.9e-45 186.0 119 88.2
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-43 179.5 118 83.9
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 4.0e-43 178.3 117 81.2
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-42 176.8 117 80.3
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.0e-39 166.0 119 82.4
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 5.9e-39 164.5 119 78.2
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.6e-36 156.4 119 76.5
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 8.0e-36 154.1 121 74.4
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 3.0e-35 152.1 120 76.7
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.0e-35 152.1 108 79.6
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.0e-35 152.1 108 79.6
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.0e-35 152.1 108 79.6
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-31 140.2 126 66.7
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 2.7e-31 139.0 118 68.6
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-31 139.0 118 68.6
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 2.7e-31 139.0 118 68.6
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 3.5e-31 138.7 118 68.6
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-31 138.3 118 67.8
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 4.5e-31 138.3 118 67.8
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 7.7e-31 137.5 118 67.8
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-30 137.1 118 68.6
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 3.8e-30 135.2 118 66.9
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 3.8e-30 135.2 118 66.9
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-29 133.3 118 66.1
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.5e-29 133.3 118 66.1
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.9e-29 132.9 118 66.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 1.6e-28 129.8 119 63.0
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.1e-28 127.9 119 63.0
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.1e-28 127.9 119 63.0
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 8.9e-27 124.0 120 61.7
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.2e-26 123.6 120 64.2
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-26 122.1 130 60.0
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 3.4e-26 122.1 122 61.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 7.5e-26 120.9 118 61.9
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.8e-24 116.3 125 58.4
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 5.4e-24 114.8 127 58.3
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 3.5e-23 112.1 123 57.7
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.3e-22 109.4 123 59.3
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.2e-15 87.0 69 69.6
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.6e-15 85.1 75 58.7
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.0e-14 84.0 89 55.1
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.0e-14 84.0 95 54.7
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.3e-14 83.6 68 58.8
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.3e-14 83.6 62 72.6
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 2.3e-14 82.8 91 53.8
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 3.0e-14 82.4 71 57.7
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 3.0e-14 82.4 143 43.4
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 6.6e-14 81.3 62 71.0
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.1e-13 80.5 65 67.7
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.1e-13 80.5 67 62.7
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 2.5e-13 79.3 62 69.4
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.3e-13 78.6 142 40.1
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 5.6e-13 78.2 115 46.1
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 5.6e-13 78.2 66 62.1
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 7.3e-13 77.8 88 52.3
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 7.3e-13 77.8 62 67.7
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 7.3e-13 77.8 62 67.7
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 9.5e-13 77.4 60 60.0
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.6e-12 76.6 141 39.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 2.1e-12 76.3 152 42.1
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.1e-12 76.3 135 41.5
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.1e-12 76.3 135 41.5
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 2.1e-12 76.3 67 61.2
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.8e-12 75.9 135 41.5
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 3.6e-12 75.5 127 42.5
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 4.7e-12 75.1 61 60.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 8.1e-12 74.3 110 46.4
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 8.1e-12 74.3 130 40.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 1.1e-11 73.9 69 56.5
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.1e-11 73.9 59 61.0
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.4e-11 73.6 116 40.5
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.4e-11 73.6 135 40.0
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.4e-11 73.6 122 41.0
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.4e-11 73.6 131 41.2
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.4e-11 73.6 62 66.1
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.4e-11 73.6 132 41.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.8e-11 73.2 62 66.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 1.8e-11 73.2 62 66.1
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.8e-11 73.2 68 55.9
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 4.0e-11 72.0 62 61.3
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 4.0e-11 72.0 87 47.1
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 5.2e-11 71.6 117 40.2
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 5.2e-11 71.6 53 64.2
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 8.9e-11 70.9 62 59.7
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 8.9e-11 70.9 82 43.9
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 2.0e-10 69.7 130 37.7
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 3.4e-10 68.9 70 58.6
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 7.5e-10 67.8 55 63.6
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.8e-10 67.4 139 36.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.8e-10 67.4 139 36.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 9.8e-10 67.4 97 42.3
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.3e-09 67.0 102 42.2
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.3e-09 67.0 96 46.9
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 3.7e-09 65.5 124 38.7
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 4.9e-09 65.1 62 50.0
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 1.1e-08 63.9 119 43.7
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.1e-08 63.9 55 52.7
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.9e-08 63.2 70 55.7
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 3.2e-08 62.4 63 54.0
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-07 60.1 53 54.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-07 60.1 55 50.9
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-07 60.1 55 50.9
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 1.3e-06 57.0 63 42.9
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 2.3e-06 56.2 137 36.5
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.0e-06 55.8 83 38.6


User provided reference genes

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