Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p33610 Brassica napus HOM05D000681 ORTHO05D011601 4.5e-155 551.2 276 100.0
BolC4t24929H Brassica oleracea HOM05D000681 ORTHO05D011601 5.7e-150 534.3 276 97.8
BcaC02g10041 Brassica carinata HOM05D000681 ORTHO05D011601 3.2e-52 209.5 110 93.6
Sp2g27920 Schrenkiella parvula HOM05D000681 ORTHO05D005458 3.7e-32 142.9 205 44.9
CARHR278850 Cardamine hirsuta HOM05D000681 ORTHO05D005458 8.2e-32 141.7 205 44.4
C03p72650 Brassica napus HOM05D000681 ORTHO05D011601 1.4e-31 141.0 204 47.5
AT5G64840 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 2.4e-31 140.2 205 43.4
AL8G42320 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 9.1e-31 138.3 205 43.4
BcaB07g29761 Brassica carinata HOM05D000681 ORTHO05D005458 1.5e-30 137.5 205 43.4
Carub.0008s2567 Capsella rubella HOM05D000681 ORTHO05D005458 1.5e-30 137.5 205 43.4
Thhalv10003741m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 2.0e-30 137.1 205 43.4
THA.LOC104799282 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 2.6e-30 136.7 205 42.9
Aa31LG1G17090 Aethionema arabicum HOM05D000681 ORTHO05D005458 3.5e-30 136.3 205 42.4
A02p43520 Brassica napus HOM05D000681 ORTHO05D005458 1.3e-29 134.4 205 42.4
C02p63610 Brassica napus HOM05D000681 ORTHO05D005458 1.3e-29 134.4 205 42.4
BcaC03g18282 Brassica carinata HOM05D000681 ORTHO05D005458 2.9e-29 133.3 205 42.0
BolC2t12427H Brassica oleracea HOM05D000681 ORTHO05D005458 2.9e-29 133.3 205 42.0
BraA02t09280Z Brassica rapa HOM05D000681 ORTHO05D005458 2.9e-29 133.3 205 42.0
Rhsim08G0006300 Rhododendron simsii HOM05D000681 ORTHO05D005458 3.8e-29 132.9 205 40.5
Rhsim08G0007000 Rhododendron simsii HOM05D000681 ORTHO05D005458 3.8e-29 132.9 205 40.5
THA.LOC104818476 Tarenaya hassleriana HOM05D000681 ORTHO05D005458 3.8e-29 132.9 205 42.0
Sopen04g023150 Solanum pennellii HOM05D000681 ORTHO05D005458 6.5e-29 132.1 205 40.5
PGSC0003DMG400016576 Solanum tuberosum HOM05D000681 ORTHO05D005458 6.5e-29 132.1 205 40.5
CAN.G347.2 Capsicum annuum HOM05D000681 ORTHO05D005458 1.1e-28 131.3 205 40.5
HanXRQChr15g0493501 Helianthus annuus HOM05D000681 ORTHO05D005458 1.4e-28 131.0 205 41.0
Solyc04g051800.3 Solanum lycopersicum HOM05D000681 ORTHO05D005458 1.4e-28 131.0 205 40.0
Dinv42689 Davidia involucrata HOM05D000681 ORTHO05D005458 2.5e-28 130.2 205 41.0
Dinv19483 Davidia involucrata HOM05D000681 ORTHO05D005458 3.2e-28 129.8 205 41.0
Lj4A865T29 Lonicera japonica HOM05D000681 ORTHO05D005458 4.2e-28 129.4 199 41.2
vmacro18636 Vaccinium macrocarpon HOM05D000681 ORTHO05D005458 4.2e-28 129.4 205 40.0
MSTRG.2527 Avicennia marina HOM05D000681 ORTHO05D005458 5.5e-28 129.0 205 40.0
Manes.12G143100 Manihot esculenta HOM05D000681 ORTHO05D005458 5.5e-28 129.0 205 41.0
CiPaw.03G134000 Carya illinoinensis HOM05D000681 ORTHO05D005458 7.2e-28 128.6 205 40.5
HanXRQChr09g0259711 Helianthus annuus HOM05D000681 ORTHO05D005458 9.4e-28 128.3 205 40.5
Hma1.2p1_0375F.1_g138760 Hydrangea macrophylla HOM05D000681 ORTHO05D005458 2.1e-27 127.1 205 40.5
Nitab4.5_0004840g0050 Nicotiana tabacum HOM05D000681 ORTHO05D005458 2.1e-27 127.1 205 39.5
Nitab4.5_0006520g0010 Nicotiana tabacum HOM05D000681 ORTHO05D005458 2.1e-27 127.1 205 39.5
Peaxi162Scf00106g02319 Petunia axillaris HOM05D000681 ORTHO05D005458 2.1e-27 127.1 205 39.0
CDE02G2865 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 2.7e-27 126.7 176 43.2
ECA232G3656 Erigeron canadensis HOM05D000681 ORTHO05D005458 2.7e-27 126.7 205 39.5
Sabra07G0067700 Salix brachista HOM05D000681 ORTHO05D005458 4.7e-27 125.9 205 39.5
Lsat_1_v5_gn_4_137440 Lactuca sativa HOM05D000681 ORTHO05D005458 6.1e-27 125.6 205 39.5
Prupe.6G171800 Prunus persica HOM05D000681 ORTHO05D005458 6.1e-27 125.6 205 40.0
Sed0012802 Sechium edule HOM05D000681 ORTHO05D005458 8.0e-27 125.2 205 40.0
SGA_v2.0_scaffold2G01293 Striga asiatica HOM05D000681 ORTHO05D005458 8.0e-27 125.2 199 40.2
CSS0026429 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.0e-26 124.8 205 40.0
CSS0032659 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D005458 1.0e-26 124.8 205 40.0
Cc07_g16310 Coffea canephora HOM05D000681 ORTHO05D005458 1.0e-26 124.8 205 38.5
CsaV3_6G042400 Cucumis sativus L. HOM05D000681 ORTHO05D005458 1.0e-26 124.8 205 40.0
Haze_25051 Corylus avellana HOM05D000681 ORTHO05D005458 1.4e-26 124.4 205 40.0
MELO3C007483.2 Cucumis melo HOM05D000681 ORTHO05D005458 1.4e-26 124.4 205 40.0
Eucgr.I00319 Eucalyptus grandis HOM05D000681 ORTHO05D005458 1.4e-26 124.4 205 39.0
SalBow6G0295 Salvia bowleyana HOM05D000681 ORTHO05D005458 1.8e-26 124.0 90 70.0
Cfa002759 Carpinus fangiana HOM05D000681 ORTHO05D005458 2.3e-26 123.6 205 40.0
Potri.007G080600 Populus trichocarpa HOM05D000681 ORTHO05D005458 2.3e-26 123.6 205 38.5
SalBow5G4766 Salvia bowleyana HOM05D000681 ORTHO05D005458 2.3e-26 123.6 205 38.5
DCAR_001373 Daucus carota HOM05D000681 ORTHO05D005458 3.0e-26 123.2 90 70.0
Glyma.04G218900 Glycine max HOM05D000681 ORTHO05D005458 3.0e-26 123.2 205 39.0
Gohir.A02G135600 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.0e-26 123.2 205 39.5
Gohir.D03G046533 Gossypium hirsutum HOM05D000681 ORTHO05D005458 3.0e-26 123.2 205 39.5
Gorai.003G047600 Gossypium raimondii HOM05D000681 ORTHO05D005458 3.0e-26 123.2 205 39.5
ClCG01G016130 Citrullus lanatus HOM05D000681 ORTHO05D005458 3.9e-26 122.9 205 40.0
Glyma.06G146900 Glycine max HOM05D000681 ORTHO05D005458 3.9e-26 122.9 205 39.0
Lalb_Chr23g0272391 Lupinus albus HOM05D000681 ORTHO05D005458 3.9e-26 122.9 205 38.0
Potri.005G084800 Populus trichocarpa HOM05D000681 ORTHO05D005458 5.2e-26 122.5 90 68.9
AT5G09930 Arabidopsis thaliana HOM05D000681 ORTHO05D005458 6.7e-26 122.1 205 38.5
Carub.0006s0837 Capsella rubella HOM05D000681 ORTHO05D005458 8.8e-26 121.7 205 38.5
COL.COLO4_11005 Corchorus olitorius HOM05D000681 ORTHO05D005458 8.8e-26 121.7 221 38.0
PGR004G1701 Punica granatum HOM05D000681 ORTHO05D005458 8.8e-26 121.7 205 39.0
AUR62000701 Chenopodium quinoa HOM05D000681 ORTHO05D005458 1.1e-25 121.3 90 66.7
AUR62005252 Chenopodium quinoa HOM05D000681 ORTHO05D005458 1.1e-25 121.3 90 66.7
Phvul.009G139100 Phaseolus vulgaris HOM05D000681 ORTHO05D005458 1.1e-25 121.3 199 38.7
Sc09g0002800 Simmondsia chinensis HOM05D000681 ORTHO05D005458 1.1e-25 121.3 90 67.8
TWI77G0095 Tripterygium wilfordii HOM05D000681 ORTHO05D005458 1.1e-25 121.3 90 71.1
Lj1g0006962 Lotus japonicus HOM05D000681 ORTHO05D005458 1.5e-25 120.9 205 37.1
Thecc.01G113800 Theobroma cacao HOM05D000681 ORTHO05D005458 1.5e-25 120.9 205 39.0
A10p27550 Brassica napus HOM05D000681 ORTHO05D005458 2.0e-25 120.6 205 38.5
BraA10t44807Z Brassica rapa HOM05D000681 ORTHO05D005458 2.0e-25 120.6 205 38.5
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 2.6e-25 120.2 123 55.3
BolC9t59524H Brassica oleracea HOM05D000681 ORTHO05D005458 3.3e-25 119.8 199 40.2
QL06p031995 Quercus lobata HOM05D000681 ORTHO05D005458 3.3e-25 119.8 205 39.5
Migut.H02441 Erythranthe guttata HOM05D000681 ORTHO05D005458 4.4e-25 119.4 90 65.6
Medtr3g095010 Medicago truncatula HOM05D000681 ORTHO05D005458 4.4e-25 119.4 205 38.5
MD15G1331800 Malus domestica HOM05D000681 ORTHO05D005458 5.7e-25 119.0 205 38.0
Sp6g33480 Schrenkiella parvula HOM05D000681 ORTHO05D005458 5.7e-25 119.0 200 38.5
TAR381G0346 Trochodendron aralioides HOM05D000681 ORTHO05D005458 5.7e-25 119.0 205 37.6
Gohir.D11G233700 Gossypium hirsutum HOM05D000681 ORTHO05D005458 7.4e-25 118.6 205 38.5
Gorai.007G244600 Gossypium raimondii HOM05D000681 ORTHO05D005458 7.4e-25 118.6 205 38.5
TPR.G23769 Trifolium pratense HOM05D000681 ORTHO05D005458 7.4e-25 118.6 90 66.7
VMungo1309G3103 Vigna mungo HOM05D000681 ORTHO05D005458 7.4e-25 118.6 199 38.7
AL6G20350 Arabidopsis lyrata HOM05D000681 ORTHO05D005458 9.7e-25 118.2 205 37.6
Duzib264G0717 Durio zibethinus HOM05D000681 ORTHO05D005458 9.7e-25 118.2 205 38.5
Thhalv10012861m.g Eutrema salsugineum HOM05D000681 ORTHO05D005458 9.7e-25 118.2 200 39.0
Gohir.A11G198000 Gossypium hirsutum HOM05D000681 ORTHO05D005458 9.7e-25 118.2 205 38.5
Atru.chr4.340 Acer truncatum HOM05D000681 ORTHO05D005458 1.3e-24 117.9 90 66.7
CANSAT01G0682 Cannabis sativa HOM05D000681 ORTHO05D005458 1.7e-24 117.5 205 37.6
EL10Ac4g09838 Beta vulgaris HOM05D000681 ORTHO05D005458 2.2e-24 117.1 90 64.4
Aa31LG3G17200 Aethionema arabicum HOM05D000681 ORTHO05D005458 2.8e-24 116.7 205 37.1
Duzib147G1662 Durio zibethinus HOM05D000681 ORTHO05D005458 2.8e-24 116.7 205 38.5
Zm00001eb115000 Zea mays HOM05D000681 ORTHO05D005458 2.8e-24 116.7 205 36.6
C09p67620 Brassica napus HOM05D000681 ORTHO05D005458 3.7e-24 116.3 199 39.7
BcaB08g37171 Brassica carinata HOM05D000681 ORTHO05D005458 4.8e-24 115.9 200 38.5
Os11g0603200 Oryza sativa ssp. japonica HOM05D000681 ORTHO05D005458 4.8e-24 115.9 205 36.6
arahy.Tifrunner.gnm1.ann1.TR14KI Arachis hypogaea HOM05D000681 ORTHO05D005458 6.3e-24 115.5 205 37.1
CDE08G1085 Ceratophyllum demersum HOM05D000681 ORTHO05D005458 6.3e-24 115.5 205 37.1
Psat5g065080 Pisum sativum HOM05D000681 ORTHO05D005458 6.3e-24 115.5 90 64.4
Aqoxy5G01993 Aquilegia oxysepala HOM05D000681 ORTHO05D005458 8.2e-24 115.2 205 35.1
Cpa.g.c44447 Carica papaya HOM05D000681 ORTHO05D005458 8.2e-24 115.2 90 64.4
Ca_16896_v3 Cicer arietinum L. HOM05D000681 ORTHO05D005458 8.2e-24 115.2 205 37.1
TAR625G1550 Trochodendron aralioides HOM05D000681 ORTHO05D005458 1.1e-23 114.8 90 65.6
Nn1g05175 Nelumbo nucifera HOM05D000681 ORTHO05D005458 1.4e-23 114.4 205 36.1
arahy.Tifrunner.gnm1.ann1.G3SQ12 Arachis hypogaea HOM05D000681 ORTHO05D005458 1.8e-23 114.0 205 36.6
MBI02_g18929_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D005458 1.8e-23 114.0 205 37.1
Lj4g0003781 Lotus japonicus HOM05D000681 ORTHO05D005458 2.4e-23 113.6 205 36.6
Nn5g28891 Nelumbo nucifera HOM05D000681 ORTHO05D005458 3.1e-23 113.2 205 36.6
Hund21729 Selenicereus undatus HOM05D000681 ORTHO05D005458 3.1e-23 113.2 90 62.2
Ciclev10025045m.g Citrus clementina HOM05D000681 ORTHO05D005458 4.1e-23 112.8 90 62.2
unitig_747.g21746 Utricularia gibba HOM05D000681 ORTHO05D005458 7.0e-23 112.1 205 36.1
RcHm_v2.0_Chr2g0116631 Rosa chinensis HOM05D000681 ORTHO05D005458 9.1e-23 111.7 199 37.2
PSO170G5235 Papaver somniferum HOM05D000681 ORTHO05D005458 1.2e-22 111.3 205 34.6
PSO210G1708 Papaver somniferum HOM05D000681 ORTHO05D005458 1.2e-22 111.3 205 34.6
FvH4_1g22620 Fragaria vesca HOM05D000681 ORTHO05D005458 2.0e-22 110.5 199 36.7
FAN19G1795 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.0e-22 110.5 199 36.7
FAN23G0462 Fragaria x ananassa HOM05D000681 ORTHO05D005458 2.0e-22 110.5 199 36.7
FAN26G1956 Fragaria x ananassa HOM05D000681 ORTHO05D005458 4.5e-22 109.4 199 36.2
FAN28G0951 Fragaria x ananassa HOM05D000681 ORTHO05D005458 5.0e-21 105.9 90 56.7
ATR0564G351 Amborella trichopoda HOM05D000681 ORTHO05D005458 1.5e-20 104.4 90 55.6
CARHR203400 Cardamine hirsuta HOM05D000681 ORTHO05D005458 1.5e-20 104.4 85 62.4
SEGI_19176 Sequoiadendron giganteum HOM05D000681 ORTHO05D005458 1.5e-20 104.4 90 56.7
BcaC01g01723 Brassica carinata HOM05D000681 ORTHO05D011601 5.5e-20 102.4 177 42.9
RcHm_v2.0_Chr2g0116661 Rosa chinensis HOM05D000681 ORTHO05D005458 7.2e-20 102.1 90 53.3
MD01G1020400 Malus domestica HOM05D000681 ORTHO05D005458 2.1e-19 100.5 90 58.9
BcaC05g28144 Brassica carinata HOM05D000681 ORTHO05D011601 3.6e-19 99.8 157 42.0
RcHm_v2.0_Chr2g0116701 Rosa chinensis HOM05D000681 ORTHO05D005458 1.4e-18 97.8 85 54.1
RcHm_v2.0_Chr2g0116821 Rosa chinensis HOM05D000681 ORTHO05D011601 3.0e-18 96.7 97 49.5
AagrBONN_evm.TU.Sc2ySwM_228.474 Anthoceros agrestis HOM05D000681 ORTHO05D005458 8.8e-18 95.1 90 50.0
Actinidia12210 Actinidia chinensis HOM05D000681 ORTHO05D005458 1.2e-17 94.7 174 37.4
Mapoly0003s0123 Marchantia polymorpha HOM05D000681 ORTHO05D005458 1.2e-17 94.7 85 52.9
SGA_v2.0_scaffold51G18759 Striga asiatica HOM05D000681 ORTHO05D005458 2.0e-17 94.0 205 34.6
Oeu028523.2 Olea europaea HOM05D000681 ORTHO05D005458 2.6e-17 93.6 175 36.6
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 3.3e-17 93.2 89 53.9
SMO358G0544 Selaginella moellendorffii HOM05D000681 ORTHO05D005458 3.3e-17 93.2 90 50.0
Pp3c19_17230 Physcomitrium patens HOM05D000681 ORTHO05D005458 1.7e-16 90.9 90 46.7
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 4.8e-16 89.4 69 62.3
Pp3c2_22140 Physcomitrium patens HOM05D000681 ORTHO05D005458 4.8e-16 89.4 90 47.8
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 8.3e-16 88.6 69 63.8
Ah.06g189110 Amaranthus hybridus HOM05D000681 ORTHO05D005458 1.4e-15 87.8 90 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4630 Anthoceros agrestis HOM05D000681 ORTHO05D005458 2.4e-15 87.0 90 45.6
RcHm_v2.0_Chr7g0224491 Rosa chinensis HOM05D000681 ORTHO05D011601 3.5e-14 83.2 90 46.7
CBR_g20265 Chara braunii HOM05D000681 ORTHO05D005458 5.9e-14 82.4 91 44.0
SGA_v2.0_scaffold226G43142 Striga asiatica HOM05D000681 ORTHO05D011601 1.0e-13 81.6 64 62.5
BolC3t19563H Brassica oleracea HOM05D000681 ORTHO05D011601 1.7e-13 80.9 92 54.3
MCO11G006 Micromonas commoda HOM05D000681 ORTHO05D005458 7.2e-12 75.5 84 47.6
A04p29660 Brassica napus HOM05D000681 ORTHO05D100499 1.6e-11 74.3 93 50.5
PRCOL_00003140 Prasinoderma coloniale HOM05D000681 ORTHO05D005458 1.4e-10 71.2 84 42.9
GSVIVG01022235001 Vitis vinifera HOM05D000681 ORTHO05D005458 1.4e-10 71.2 170 31.8
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 6.8e-10 68.9 48 66.7
Cre08.g372250 Chlamydomonas reinhardtii HOM05D000681 ORTHO05D005458 6.8e-10 68.9 93 34.4
Actinidia31245 Actinidia chinensis HOM05D000681 ORTHO05D011601 2.8e-08 63.5 49 67.3
HPP92_013373 Vanilla planifolia HOM05D000681 ORTHO05D005458 8.3e-08 62.0 45 64.4
BcaNung00716 Brassica carinata HOM05D011385 ORTHO05D011601 4.1e-07 59.7 38 76.3
C01p02480 Brassica napus HOM05D011385 ORTHO05D011601 4.1e-07 59.7 38 76.3
BolC1t00584H Brassica oleracea HOM05D011385 ORTHO05D011601 1.6e-06 57.8 48 64.6
BolC1t00236H Brassica oleracea HOM05D011385 ORTHO05D011601 2.7e-06 57.0 38 73.7
BolC1t00579H Brassica oleracea HOM05D011385 ORTHO05D011601 2.7e-06 57.0 43 67.4
BolC1t00587H Brassica oleracea HOM05D011385 ORTHO05D011601 2.7e-06 57.0 39 71.8
BraA01t00506Z Brassica rapa HOM05D011385 ORTHO05D011601 2.7e-06 57.0 49 63.3


User provided reference genes

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