Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p29560 Brassica napus HOM05D000162 ORTHO05D021394 1.3e-67 261.2 235 100.0
C04p29600 Brassica napus HOM05D000162 ORTHO05D021394 2.0e-65 253.8 235 97.4
BolC4t24490H Brassica oleracea HOM05D000162 ORTHO05D000090 4.5e-20 103.2 65 76.9
AL2G12890 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 5.5e-18 96.3 65 69.2
Thhalv10023907m.g Eutrema salsugineum HOM05D000162 ORTHO05D021394 5.5e-18 96.3 65 72.3
BcaC04g22688 Brassica carinata HOM05D000162 ORTHO05D000090 1.2e-17 95.1 65 70.8
C09p16530 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-17 95.1 65 70.8
BolC9t54562H Brassica oleracea HOM05D000162 ORTHO05D000090 1.2e-17 95.1 65 70.8
A09p13820 Brassica napus HOM05D000162 ORTHO05D000090 1.6e-17 94.7 65 69.2
BraA09t37034Z Brassica rapa HOM05D000162 ORTHO05D000090 1.6e-17 94.7 65 69.2
AL2G12180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.5e-17 93.6 65 67.7
Thhalv10024048m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.6e-17 93.2 64 65.6
Thhalv10023918m.g Eutrema salsugineum HOM05D000162 ORTHO05D020197 3.0e-16 90.5 63 66.7
AT1G64100 Arabidopsis thaliana HOM05D010613 ORTHO05D014059 2.5e-15 87.4 65 63.1
Carub.0002s0151 Capsella rubella HOM05D000162 ORTHO05D000090 2.1e-14 84.3 67 64.2
AL2G12900 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.9e-13 79.3 56 71.4
CARHR049170 Cardamine hirsuta HOM05D000162 ORTHO05D000090 5.8e-12 76.3 65 53.8
Carub.0002s0125 Capsella rubella HOM05D000162 ORTHO05D000090 1.1e-10 72.0 64 56.2
A10p22570 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-10 70.5 65 47.7
BraA10t44319Z Brassica rapa HOM05D000162 ORTHO05D000090 3.2e-10 70.5 65 47.7
A09p66920 Brassica napus HOM05D000162 ORTHO05D000090 7.2e-10 69.3 65 50.8
BraA09t42027Z Brassica rapa HOM05D000162 ORTHO05D000090 7.2e-10 69.3 65 50.8
A09p13880 Brassica napus HOM05D000162 ORTHO05D000090 1.2e-09 68.6 41 80.5
CARHR046840 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.2e-09 68.6 47 70.2
C08p51150 Brassica napus HOM05D000162 ORTHO05D000090 1.6e-09 68.2 65 50.8
BolC8t52641H Brassica oleracea HOM05D000162 ORTHO05D000090 1.6e-09 68.2 65 50.8
Carub.0002s0230 Capsella rubella HOM05D000162 ORTHO05D000090 2.1e-09 67.8 65 46.2
A09p63470 Brassica napus HOM05D000162 ORTHO05D000090 2.7e-09 67.4 64 51.6
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 2.7e-09 67.4 64 51.6
BraA09t41697Z Brassica rapa HOM05D000162 ORTHO05D000090 2.7e-09 67.4 64 51.6
AL2G13120 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.1e-09 66.2 64 45.3
AT1G62680 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 6.1e-09 66.2 64 45.3
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 6.1e-09 66.2 64 50.0
BcaC07g41685 Brassica carinata HOM05D000162 ORTHO05D000090 7.9e-09 65.9 64 50.0
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 7.9e-09 65.9 64 50.0
BolC8t52255H Brassica oleracea HOM05D000162 ORTHO05D000090 7.9e-09 65.9 64 50.0
CARHR055270 Cardamine hirsuta HOM05D000162 ORTHO05D000090 7.9e-09 65.9 65 47.7
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.3e-08 65.1 65 46.2
CARHR049120 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.8e-08 64.7 65 50.8
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 3.0e-08 63.9 64 48.4
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 3.0e-08 63.9 64 48.4
CARHR046360 Cardamine hirsuta HOM05D000162 ORTHO05D000090 3.0e-08 63.9 65 47.7
BcaC04g22436 Brassica carinata HOM05D000162 ORTHO05D000090 3.9e-08 63.5 62 46.8
Manes.09G016766 Manihot esculenta HOM05D010002 ORTHO05D012862 5.1e-08 63.2 73 45.2
THA.LOC104814175 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 5.1e-08 63.2 56 51.8
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 6.7e-08 62.8 64 46.9
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 6.7e-08 62.8 64 46.9
BcaC07g42059 Brassica carinata HOM05D000162 ORTHO05D000090 6.7e-08 62.8 65 47.7
Carub.0002s0191 Capsella rubella HOM05D000162 ORTHO05D000090 6.7e-08 62.8 64 43.8
Carub.0002s0226 Capsella rubella HOM05D000162 ORTHO05D000090 6.7e-08 62.8 64 46.9
Thhalv10023942m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 6.7e-08 62.8 65 44.6
Gohir.D10G136600 Gossypium hirsutum HOM05D000162 ORTHO05D000090 6.7e-08 62.8 63 41.3
Gorai.011G151500 Gossypium raimondii HOM05D000162 ORTHO05D000090 6.7e-08 62.8 63 41.3
Gohir.D05G357100 Gossypium hirsutum HOM05D000162 ORTHO05D000090 8.7e-08 62.4 63 41.3
Gorai.009G389500 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.7e-08 62.4 63 41.3
AL1G24080 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-07 62.0 64 43.8
AT1G12775 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.1e-07 62.0 64 40.6
C09p19330 Brassica napus HOM05D000162 ORTHO05D000090 1.5e-07 61.6 58 48.3
BolC9t54844H Brassica oleracea HOM05D000162 ORTHO05D000090 1.5e-07 61.6 58 48.3
CARHR046370 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.5e-07 61.6 65 46.2
Thhalv10007095m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.5e-07 61.6 64 45.3
THA.LOC104806886 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.5e-07 61.6 61 47.5
AL2G10960 Arabidopsis lyrata HOM05D010613 ORTHO05D000090 1.9e-07 61.2 42 69.0
BcaC07g41701 Brassica carinata HOM05D000162 ORTHO05D000090 1.9e-07 61.2 64 45.3
A09p63860 Brassica napus HOM05D000162 ORTHO05D000090 1.9e-07 61.2 64 45.3
C08p47380 Brassica napus HOM05D000162 ORTHO05D000090 1.9e-07 61.2 64 45.3
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.9e-07 61.2 64 45.3
Aa31LG5G12130 Aethionema arabicum HOM05D000162 ORTHO05D000090 2.5e-07 60.8 65 46.2
AL1G23630 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.5e-07 60.8 64 45.3
Sp3g20240 Schrenkiella parvula HOM05D000162 ORTHO05D000090 2.5e-07 60.8 65 46.2
THA.LOC104806884 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.5e-07 60.8 56 50.0
THA.LOC104806963 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.5e-07 60.8 56 48.2
CARHR047600 Cardamine hirsuta HOM05D000162 ORTHO05D000090 3.3e-07 60.5 49 59.2
QL04p040267 Quercus lobata HOM05D000162 ORTHO05D000090 3.3e-07 60.5 63 41.3
Aa31LG11G12980 Aethionema arabicum HOM05D000162 ORTHO05D000090 4.3e-07 60.1 64 42.2
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 4.3e-07 60.1 64 43.8
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 4.3e-07 60.1 64 46.9
Thhalv10002441m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.3e-07 60.1 64 46.9
Thhalv10020312m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.3e-07 60.1 64 45.3
Gohir.A04G034300 Gossypium hirsutum HOM05D000162 ORTHO05D000090 4.3e-07 60.1 65 38.5
Gorai.004G243800 Gossypium raimondii HOM05D000162 ORTHO05D000090 4.3e-07 60.1 63 39.7
THA.LOC104811187 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 4.3e-07 60.1 56 46.4
AT1G06580 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 5.7e-07 59.7 62 41.9
Thhalv10007048m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 5.7e-07 59.7 64 43.8
BcaB08g36832 Brassica carinata HOM05D000162 ORTHO05D000090 7.4e-07 59.3 65 41.5
BraA09t41732Z Brassica rapa HOM05D000162 ORTHO05D000090 7.4e-07 59.3 64 43.8
THA.LOC104806624 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 7.4e-07 59.3 56 44.6
BraA09t41634Z Brassica rapa HOM05D000162 ORTHO05D000090 9.7e-07 58.9 64 42.2
Gorai.009G376400 Gossypium raimondii HOM05D000162 ORTHO05D000090 9.7e-07 58.9 63 39.7
Hma1.2p1_1276F.1_g272140 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 9.7e-07 58.9 63 42.9
Sp2g00170 Schrenkiella parvula HOM05D000162 ORTHO05D000090 9.7e-07 58.9 62 41.9
THA.LOC104806600 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 9.7e-07 58.9 56 44.6
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.3e-06 58.5 64 43.8
AL2G10190 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.3e-06 58.5 65 43.1
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 1.3e-06 58.5 64 42.2
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 1.3e-06 58.5 65 46.2
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 1.3e-06 58.5 64 42.2
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 1.3e-06 58.5 65 46.2
Carub.0001s1246 Capsella rubella HOM05D000162 ORTHO05D000090 1.3e-06 58.5 64 43.8
CARHR052810 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.3e-06 58.5 75 46.7
THA.LOC104806879 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 1.3e-06 58.5 56 48.2
AT1G63080 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.6e-06 58.2 62 43.5
AT1G63630 Arabidopsis thaliana HOM05D060831 ORTHO05D021394 1.6e-06 58.2 42 54.8
BcaB07g31581 Brassica carinata HOM05D000162 ORTHO05D000090 1.6e-06 58.2 64 42.2
A09p16080 Brassica napus HOM05D000162 ORTHO05D000090 1.6e-06 58.2 58 46.6
BraA09t37245Z Brassica rapa HOM05D000162 ORTHO05D000090 1.6e-06 58.2 58 46.6
Thhalv10009452m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.6e-06 58.2 56 46.4
Thhalv10023349m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.6e-06 58.2 65 40.0
AL2G13140 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.2e-06 57.8 56 44.6
BraA09t37013Z Brassica rapa HOM05D000162 ORTHO05D000090 2.2e-06 57.8 67 44.8
Carub.0001s1189 Capsella rubella HOM05D000162 ORTHO05D000090 2.2e-06 57.8 64 48.4
THA.LOC104798481 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-06 57.8 54 46.3
THA.LOC104803570 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-06 57.8 56 48.2
THA.LOC104806932 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-06 57.8 56 44.6
THA.LOC104806936 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.2e-06 57.8 56 48.2
A09p14560 Brassica napus HOM05D000162 ORTHO05D000090 2.8e-06 57.4 66 43.9
BraA09t37104Z Brassica rapa HOM05D000162 ORTHO05D000090 2.8e-06 57.4 66 43.9
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 2.8e-06 57.4 65 41.5
Gohir.D05G348800 Gossypium hirsutum HOM05D000162 ORTHO05D000090 2.8e-06 57.4 63 38.1
THA.LOC104808474 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.8e-06 57.4 56 42.9
THA.LOC109115971 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.8e-06 57.4 56 48.2
TWI36G0958 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 2.8e-06 57.4 63 39.7
AT1G12300 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 3.7e-06 57.0 64 39.1
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 3.7e-06 57.0 64 42.2
Carub.0002s0210 Capsella rubella HOM05D000162 ORTHO05D000090 3.7e-06 57.0 65 41.5
Thhalv10023806m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.7e-06 57.0 56 44.6
Thhalv10023944m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.7e-06 57.0 65 41.5
Gohir.A04G034500 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.7e-06 57.0 63 38.1
Gohir.A08G209800 Gossypium hirsutum HOM05D000162 ORTHO05D000090 3.7e-06 57.0 56 41.1
QL04p042212 Quercus lobata HOM05D000162 ORTHO05D000090 3.7e-06 57.0 63 39.7
THA.LOC104813194 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.7e-06 57.0 54 44.4
THA.LOC109115996 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.7e-06 57.0 56 44.6
THA.LOC109116017 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 3.7e-06 57.0 54 44.4
AL2G12810 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.8e-06 56.6 62 38.7
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 4.8e-06 56.6 64 40.6
A09p63620 Brassica napus HOM05D000162 ORTHO05D000090 4.8e-06 56.6 64 42.2
A09p63660 Brassica napus HOM05D000162 ORTHO05D000090 4.8e-06 56.6 64 42.2
CARHR048840 Cardamine hirsuta HOM05D000162 ORTHO05D000090 4.8e-06 56.6 61 44.3
Gohir.A04G034800 Gossypium hirsutum HOM05D000162 ORTHO05D000090 4.8e-06 56.6 63 38.1
Hma1.2p1_2917F.1_g330320 Hydrangea macrophylla HOM05D000162 ORTHO05D000090 4.8e-06 56.6 65 38.5
C09p60480 Brassica napus HOM05D000162 ORTHO05D000090 6.3e-06 56.2 65 38.5
BolC9t58881H Brassica oleracea HOM05D000162 ORTHO05D000090 6.3e-06 56.2 65 38.5
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 6.3e-06 56.2 64 42.2
Gohir.D05G348501 Gossypium hirsutum HOM05D000162 ORTHO05D000090 6.3e-06 56.2 63 38.1
QL03p018073 Quercus lobata HOM05D000162 ORTHO05D000090 6.3e-06 56.2 63 38.1
THA.LOC104806931 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 56 46.4
THA.LOC104806934 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 56 44.6
THA.LOC104806937 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 56 44.6
THA.LOC104807046 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 56 44.6
THA.LOC104807047 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 62 41.9
THA.LOC104807049 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 6.3e-06 56.2 56 48.2
VMungo0392G0001 Vigna mungo HOM05D000162 ORTHO05D000090 6.3e-06 56.2 64 40.6
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.2e-06 55.8 64 40.6
AL3G36780 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.2e-06 55.8 64 43.8
AL6G27650 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.2e-06 55.8 65 38.5
AT1G12700 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 8.2e-06 55.8 64 37.5
AT5G16640 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 8.2e-06 55.8 65 38.5
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 8.2e-06 55.8 69 39.1
BcaB05g22690 Brassica carinata HOM05D000162 ORTHO05D000003 8.2e-06 55.8 80 36.2
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 8.2e-06 55.8 61 42.6
Gorai.009G375400 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.2e-06 55.8 65 40.0
Gorai.009G377300 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.2e-06 55.8 63 36.5
Gorai.011G146600 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.2e-06 55.8 56 42.9
Gorai.013G060600 Gossypium raimondii HOM05D000162 ORTHO05D000090 8.2e-06 55.8 56 39.3
QL04p064892 Quercus lobata HOM05D000162 ORTHO05D000090 8.2e-06 55.8 63 41.3
Thecc.05G266000 Theobroma cacao HOM05D000162 ORTHO05D000090 8.2e-06 55.8 54 48.1


User provided reference genes

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