Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 3.0e-66 256.5 363 100.0
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 3.4e-33 146.7 113 70.8
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 1.2e-30 138.3 117 62.4
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 7.7e-30 135.6 92 75.0
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 1.3e-29 134.8 110 64.5
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 2.1e-27 127.5 70 92.9
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 1.8e-26 124.4 114 57.9
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.2e-25 121.7 109 60.6
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 1.2e-25 121.7 110 59.1
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.5e-25 119.0 94 64.9
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 1.7e-24 117.9 110 60.0
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 4.1e-23 113.2 95 61.1
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 3.5e-22 110.2 115 50.4
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 4.5e-22 109.8 87 67.8
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 1.0e-21 108.6 110 54.5
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 5.0e-21 106.3 114 51.8
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-20 105.1 110 53.6
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.1e-20 105.1 68 77.9
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 1.9e-20 104.4 110 52.7
AL2G12510 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 3.1e-18 97.1 121 46.3
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 4.0e-18 96.7 65 75.4
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.2e-17 95.1 85 57.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-17 95.1 93 52.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.2e-17 95.1 85 57.6
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 7.5e-17 92.4 76 63.2
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 7.5e-17 92.4 76 63.2
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 1.3e-16 91.7 76 63.2
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.7e-16 91.3 68 67.6
BraA09t37012Z Brassica rapa HOM05D000162 ORTHO05D003288 2.2e-16 90.9 109 47.7
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 3.7e-16 90.1 96 51.0
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 4.9e-16 89.7 51 88.2
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 6.4e-16 89.4 116 43.1
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.1e-15 88.6 51 86.3
BcaC02g10419 Brassica carinata HOM05D000162 ORTHO05D003288 1.4e-15 88.2 41 100.0
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 3.2e-15 87.0 50 86.0
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 5.4e-15 86.3 51 84.3
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 5.4e-15 86.3 51 84.3
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 9.2e-15 85.5 52 82.7
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.2e-15 85.5 48 89.6
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 1.6e-14 84.7 51 82.4
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.7e-14 84.0 76 57.9
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 2.7e-14 84.0 51 82.4
CARHR048230 Cardamine hirsuta HOM05D038018 ORTHO05D003288 2.7e-14 84.0 60 70.0
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.6e-14 83.2 71 57.7
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.8e-14 82.4 51 80.4
BolC4t24433H Brassica oleracea HOM05D000162 ORTHO05D003288 7.8e-14 82.4 88 53.4
C03p91580 Brassica napus HOM05D000162 ORTHO05D003288 1.0e-13 82.0 52 84.6
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 1.0e-13 82.0 51 82.4
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.0e-13 82.0 51 78.4
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.3e-13 81.6 52 76.9
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.3e-13 81.6 52 78.8
BolC4t26917H Brassica oleracea HOM05D000162 ORTHO05D003288 1.7e-13 81.3 64 68.8
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 3.9e-13 80.1 70 60.0
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 5.0e-13 79.7 71 60.6
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.0e-13 79.7 52 80.8
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 1.9e-12 77.8 68 55.9
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 1.9e-12 77.8 110 42.7
C04p53620 Brassica napus HOM05D000162 ORTHO05D003288 4.3e-12 76.6 101 46.5
CARHR151310 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.6e-12 76.3 118 42.4
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.3e-12 75.9 104 40.4
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 9.5e-12 75.5 73 56.2
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 1.2e-11 75.1 69 56.5
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 1.2e-11 75.1 51 76.5
C01p47640 Brassica napus HOM05D000162 ORTHO05D000090 2.1e-11 74.3 60 63.3
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 3.6e-11 73.6 69 53.6
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.7e-11 73.2 52 69.2
BolC1t04736H Brassica oleracea HOM05D000162 ORTHO05D000090 1.4e-10 71.6 60 61.7
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.8e-10 71.2 44 81.8
AT1G63320 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 1.8e-10 71.2 115 37.4
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 4.0e-10 70.1 114 38.6
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 5.2e-10 69.7 114 38.6
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 1.2e-09 68.6 111 41.4
BolC3t17765H Brassica oleracea HOM05D000162 ORTHO05D003288 1.5e-09 68.2 115 36.5
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.0e-09 67.8 103 34.0
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 2.6e-09 67.4 77 48.1
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 2.6e-09 67.4 77 48.1
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.4e-09 67.0 130 32.3
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 1.3e-08 65.1 101 37.6
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.3e-08 65.1 95 37.9
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.2e-08 64.3 84 39.3
Sp1g11210 Schrenkiella parvula HOM05D037784 ORTHO05D033625 2.2e-08 64.3 52 59.6
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 2.9e-08 63.9 110 40.0
arahy.Tifrunner.gnm1.ann1.U8UX16 Arachis hypogaea HOM05D000239 ORTHO05D009715 4.9e-08 63.2 83 41.0
AUR62000844 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.9e-08 63.2 115 32.2
AL2G12810 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.4e-08 62.8 51 68.6
C08p51150 Brassica napus HOM05D000162 ORTHO05D000090 6.4e-08 62.8 57 52.6
BolC8t52641H Brassica oleracea HOM05D000162 ORTHO05D000090 6.4e-08 62.8 57 52.6
HanXRQChr13g0420261 Helianthus annuus HOM05D022346 ORTHO05D003288 6.4e-08 62.8 117 32.5
BcaC02g08506 Brassica carinata HOM05D000162 ORTHO05D003288 8.3e-08 62.4 35 88.6
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 8.3e-08 62.4 44 70.5
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 1.1e-07 62.0 91 38.5
CARHR051010 Cardamine hirsuta HOM05D010115 ORTHO05D003288 1.4e-07 61.6 58 55.2
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-07 61.6 112 34.8
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 1.9e-07 61.2 52 59.6
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.9e-07 61.2 44 70.5
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.4e-07 60.8 40 77.5
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 2.4e-07 60.8 110 35.5
BcaC04g22687 Brassica carinata HOM05D000162 ORTHO05D003288 3.2e-07 60.5 90 43.3
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.2e-07 60.5 88 39.8
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.1e-07 60.1 108 31.5
AL2G13280 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 7.0e-07 59.3 35 82.9
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 7.0e-07 59.3 53 60.4
Migut.M00051 Erythranthe guttata HOM05D000162 ORTHO05D000090 7.0e-07 59.3 97 36.1
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.2e-07 58.9 40 72.5
Rhsim02G0033800 Rhododendron simsii HOM05D026694 ORTHO05D003288 9.2e-07 58.9 88 37.5
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 1.2e-06 58.5 51 58.8
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 1.2e-06 58.5 52 57.7
Gohir.D13G171200 Gossypium hirsutum HOM05D007661 ORTHO05D009671 1.2e-06 58.5 88 30.7
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.6e-06 58.2 108 30.6
AT1G06580 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.1e-06 57.8 47 55.3
AT1G63070 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.1e-06 57.8 29 93.1
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 2.1e-06 57.8 53 56.6
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 2.1e-06 57.8 53 56.6
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.1e-06 57.8 88 34.1
Gohir.D13G171600 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.7e-06 57.4 86 32.6
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 2.7e-06 57.4 86 32.6
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 2.7e-06 57.4 86 32.6
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 2.7e-06 57.4 104 30.8
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.5e-06 57.0 43 69.8
TPR.G9763 Trifolium pratense HOM05D008100 ORTHO05D009715 3.5e-06 57.0 91 33.0
Carub.0002s0191 Capsella rubella HOM05D000162 ORTHO05D000090 4.6e-06 56.6 31 87.1
CARHR047950 Cardamine hirsuta HOM05D015660 ORTHO05D003288 4.6e-06 56.6 29 89.7
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.6e-06 56.6 97 33.0
FAN21G1710 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.6e-06 56.6 100 34.0
Gohir.A11G054800 Gossypium hirsutum HOM05D007661 ORTHO05D009671 4.6e-06 56.6 86 31.4
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 4.6e-06 56.6 86 33.7
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 6.0e-06 56.2 49 57.1
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 6.0e-06 56.2 49 57.1
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 6.0e-06 56.2 49 57.1
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.0e-06 56.2 108 31.5
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 6.0e-06 56.2 114 30.7
Thhalv10023345m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 6.0e-06 56.2 34 82.4
Gorai.011G151100 Gossypium raimondii HOM05D000162 ORTHO05D003288 6.0e-06 56.2 60 46.7
HanXRQChr15g0491421 Helianthus annuus HOM05D022346 ORTHO05D003288 6.0e-06 56.2 108 30.6
AT1G62670 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.8e-06 55.8 31 87.1
AT1G62910 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 7.8e-06 55.8 31 87.1
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 7.8e-06 55.8 49 57.1
CARHR047970 Cardamine hirsuta HOM05D000162 ORTHO05D000090 7.8e-06 55.8 32 84.4


User provided reference genes

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