Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p28450 Brassica napus HOM05D000313 ORTHO05D028035 6.9e-20 99.8 53 100.0
C04p28460 Brassica napus HOM05D000313 ORTHO05D028035 6.9e-20 99.8 53 100.0
C04p28470 Brassica napus HOM05D000313 ORTHO05D028035 6.9e-20 99.8 53 100.0
BolC4t24392H Brassica oleracea HOM05D000313 ORTHO05D028035 6.9e-20 99.8 53 100.0
BolC2t06935H Brassica oleracea HOM05D000313 ORTHO05D000065 3.2e-17 90.9 53 92.5
BolC9t54710H Brassica oleracea HOM05D000313 ORTHO05D027753 2.5e-14 81.3 46 91.3
C08p45950 Brassica napus HOM05D000313 ORTHO05D013793 4.3e-14 80.5 45 93.3
BolC1t03941H Brassica oleracea HOM05D000313 ORTHO05D003548 4.3e-14 80.5 45 93.3
BolC3t15908H Brassica oleracea HOM05D000313 ORTHO05D003548 4.3e-14 80.5 45 93.3
BcaC07g37624 Brassica carinata HOM05D000313 ORTHO05D027753 9.6e-14 79.3 46 89.1
BolC9t56757H Brassica oleracea HOM05D000313 ORTHO05D013793 1.3e-13 79.0 46 87.0
BolC9t55229H Brassica oleracea HOM05D000313 ORTHO05D013793 2.1e-13 78.2 46 89.1
BolC7t41253H Brassica oleracea HOM05D000313 ORTHO05D027753 2.8e-13 77.8 46 89.1
C07p40620 Brassica napus HOM05D000313 ORTHO05D027753 3.7e-13 77.4 46 89.1
BolC2t10509H Brassica oleracea HOM05D000313 ORTHO05D013793 3.7e-13 77.4 46 89.1
C03p26850 Brassica napus HOM05D001215 ORTHO05D024523 6.2e-13 76.6 46 84.8
BolC6t36640H Brassica oleracea HOM05D000313 ORTHO05D013793 6.2e-13 76.6 46 87.0
BcaC08g43827 Brassica carinata HOM05D001829 ORTHO05D003548 1.1e-12 75.9 44 88.6
C06p12110 Brassica napus HOM05D001829 ORTHO05D003548 1.1e-12 75.9 44 88.6
BolC2t11731H Brassica oleracea HOM05D000313 ORTHO05D013793 1.1e-12 75.9 46 84.8
BolC6t36349H Brassica oleracea HOM05D001829 ORTHO05D003548 1.1e-12 75.9 44 88.6
C06p03280 Brassica napus HOM05D000313 ORTHO05D013793 1.4e-12 75.5 51 78.4
BolC5t33059H Brassica oleracea HOM05D000313 ORTHO05D013793 1.4e-12 75.5 46 84.8
BcaB07g33017 Brassica carinata HOM05D001829 ORTHO05D003548 1.8e-12 75.1 44 88.6
BcaC07g37740 Brassica carinata HOM05D000313 ORTHO05D003548 1.8e-12 75.1 43 88.4
A09p32580 Brassica napus HOM05D001829 ORTHO05D003548 1.8e-12 75.1 44 88.6
BolC1t01376H Brassica oleracea HOM05D000313 ORTHO05D013793 1.8e-12 75.1 46 84.8
BraA09t38799Z Brassica rapa HOM05D001829 ORTHO05D003548 1.8e-12 75.1 44 88.6
BolC8t51190H Brassica oleracea HOM05D000313 ORTHO05D000065 3.1e-12 74.3 46 84.8
C09p55330 Brassica napus HOM05D025000 ORTHO05D003548 4.0e-12 73.9 46 84.8
C09p14640 Brassica napus HOM05D010411 ORTHO05D011177 9.0e-12 72.8 40 92.5
BolC2t11634H Brassica oleracea HOM05D000313 ORTHO05D000065 2.0e-11 71.6 58 74.1
BolC4t25503H Brassica oleracea HOM05D000313 ORTHO05D013793 2.0e-11 71.6 41 87.8
Sp1g29240 Schrenkiella parvula HOM05D001829 ORTHO05D003548 6.4e-10 66.6 43 81.4
BolC9t56046H Brassica oleracea HOM05D000313 ORTHO05D013793 1.1e-09 65.9 39 84.6
BolC9t54620H Brassica oleracea HOM05D000313 ORTHO05D013793 2.4e-09 64.7 39 87.2
C04p13020 Brassica napus HOM05D000313 ORTHO05D101481 5.5e-09 63.5 53 71.7
C04p13070 Brassica napus HOM05D000313 ORTHO05D099178 5.5e-09 63.5 53 71.7
Thhalv10007455m.g Eutrema salsugineum HOM05D001829 ORTHO05D003548 1.6e-08 62.0 42 73.8
A05p24170 Brassica napus HOM05D001829 ORTHO05D003548 6.0e-08 60.1 43 76.7
BolC5t32519H Brassica oleracea HOM05D001829 ORTHO05D003548 6.0e-08 60.1 43 76.7
BraA05t21296Z Brassica rapa HOM05D001829 ORTHO05D003548 6.0e-08 60.1 43 76.7
BcaC05g27789 Brassica carinata HOM05D001829 ORTHO05D003548 3.0e-07 57.8 43 72.1
C05p37840 Brassica napus HOM05D001829 ORTHO05D003548 3.0e-07 57.8 43 72.1
BcaB04g17913 Brassica carinata HOM05D001829 ORTHO05D003548 3.9e-07 57.4 43 74.4
C09p48520 Brassica napus HOM05D000313 ORTHO05D013793 5.1e-07 57.0 32 90.6
BolC2t07852H Brassica oleracea HOM05D000313 ORTHO05D104896 5.1e-07 57.0 32 90.6
BolC3t18288H Brassica oleracea HOM05D000313 ORTHO05D106949 5.1e-07 57.0 30 96.7
BcaB03g13685 Brassica carinata HOM05D001829 ORTHO05D003548 1.9e-06 55.1 43 69.8
Aa31LG6G8200 Aethionema arabicum HOM05D001829 ORTHO05D003548 2.5e-06 54.7 43 65.1
CARHR033360 Cardamine hirsuta HOM05D001829 ORTHO05D003548 3.3e-06 54.3 43 65.1
AL1G48420 Arabidopsis lyrata HOM05D001829 ORTHO05D003548 9.6e-06 52.8 43 62.8


User provided reference genes

Program Settings