Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p24150 Brassica napus HOM05D002338 ORTHO05D006706 4.7e-109 397.9 202 100.0
BolC4t23912H Brassica oleracea HOM05D002338 ORTHO05D006706 1.7e-103 379.4 223 88.8
BcaC02g10875 Brassica carinata HOM05D002338 ORTHO05D006706 9.8e-67 257.3 199 71.9
C04p56750 Brassica napus HOM05D002338 ORTHO05D006706 2.4e-28 129.8 145 57.2
BolC4t27207H Brassica oleracea HOM05D002338 ORTHO05D006706 2.4e-28 129.8 145 57.2
A04p20960 Brassica napus HOM05D002338 ORTHO05D006706 1.5e-27 127.1 145 56.6
BraA04t17665Z Brassica rapa HOM05D002338 ORTHO05D006706 1.5e-27 127.1 145 56.6
Thhalv10017003m.g Eutrema salsugineum HOM05D002338 ORTHO05D006706 1.7e-26 123.6 145 56.6
Carub.0004s0807 Capsella rubella HOM05D002338 ORTHO05D006706 1.4e-25 120.6 145 56.6
Sp4g10240 Schrenkiella parvula HOM05D002338 ORTHO05D006706 1.4e-25 120.6 145 55.2
AL4G21410 Arabidopsis lyrata HOM05D002338 ORTHO05D006706 1.2e-24 117.5 145 54.5
AT2G27450 Arabidopsis thaliana HOM05D002338 ORTHO05D006706 2.1e-24 116.7 145 54.5
Aa31LG5G8780 Aethionema arabicum HOM05D002338 ORTHO05D006706 2.7e-24 116.3 145 53.1
Ciclev10028933m.g Citrus clementina HOM05D002338 ORTHO05D006706 6.0e-24 115.2 145 53.8
SalBow3G4661 Salvia bowleyana HOM05D002338 ORTHO05D006706 7.9e-24 114.8 155 48.4
ECA248G0812 Erigeron canadensis HOM05D002338 ORTHO05D006706 1.3e-23 114.0 145 53.8
SGA_v2.0_scaffold295G47518 Striga asiatica HOM05D002338 ORTHO05D006706 1.3e-23 114.0 155 47.1
THA.LOC104800525 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 1.3e-23 114.0 145 53.8
THA.LOC104826428 Tarenaya hassleriana HOM05D002338 ORTHO05D006706 1.3e-23 114.0 145 53.8
Potri.004G201400 Populus trichocarpa HOM05D002338 ORTHO05D006706 1.8e-23 113.6 145 51.7
GSVIVG01036111001 Vitis vinifera HOM05D002338 ORTHO05D006706 1.8e-23 113.6 149 50.3
CARHR120040 Cardamine hirsuta HOM05D002338 ORTHO05D006706 2.3e-23 113.2 145 53.1
VMungo1080G1495 Vigna mungo HOM05D002338 ORTHO05D006706 2.3e-23 113.2 145 51.7
AUR62009748 Chenopodium quinoa HOM05D002338 ORTHO05D006706 3.0e-23 112.8 155 49.0
AUR62036197 Chenopodium quinoa HOM05D002338 ORTHO05D006706 3.0e-23 112.8 155 49.0
Sabra04G0136100 Salix brachista HOM05D002338 ORTHO05D006706 3.0e-23 112.8 145 52.4
Oeu002370.1 Olea europaea HOM05D002338 ORTHO05D006706 3.9e-23 112.5 148 52.0
Phvul.005G123100 Phaseolus vulgaris HOM05D002338 ORTHO05D006706 3.9e-23 112.5 145 51.7
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 5.1e-23 112.1 145 53.1
CANSAT54G2275 Cannabis sativa HOM05D002338 ORTHO05D006706 5.1e-23 112.1 145 52.4
Gohir.A09G096100 Gossypium hirsutum HOM05D002338 ORTHO05D006706 5.1e-23 112.1 145 52.4
Hund18762 Selenicereus undatus HOM05D002338 ORTHO05D006706 5.1e-23 112.1 145 52.4
Manes.04G002800 Manihot esculenta HOM05D002338 ORTHO05D006706 6.7e-23 111.7 149 51.0
ATR0820G136 Amborella trichopoda HOM05D002338 ORTHO05D006706 8.7e-23 111.3 149 51.0
CSS0045463 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 8.7e-23 111.3 145 52.4
Cfa010006 Carpinus fangiana HOM05D002338 ORTHO05D006706 8.7e-23 111.3 145 51.7
Haze_23365 Corylus avellana HOM05D002338 ORTHO05D006706 8.7e-23 111.3 145 51.0
Lj2A965T21 Lonicera japonica HOM05D002338 ORTHO05D006706 8.7e-23 111.3 145 51.7
vmacro14352 Vaccinium macrocarpon HOM05D002338 ORTHO05D006706 1.1e-22 110.9 145 51.0
Dinv22835 Davidia involucrata HOM05D002338 ORTHO05D006706 1.5e-22 110.5 145 51.7
Gohir.D09G095800 Gossypium hirsutum HOM05D002338 ORTHO05D006706 1.5e-22 110.5 145 51.7
Gorai.006G112500 Gossypium raimondii HOM05D002338 ORTHO05D006706 1.5e-22 110.5 145 51.7
Lalb_Chr24g0393531 Lupinus albus HOM05D002338 ORTHO05D006706 1.5e-22 110.5 145 51.0
Sc21g0007050 Simmondsia chinensis HOM05D002338 ORTHO05D006706 1.9e-22 110.2 155 47.7
Duzib150G1080 Durio zibethinus HOM05D002338 ORTHO05D006706 2.5e-22 109.8 149 49.7
Migut.N02484 Erythranthe guttata HOM05D002338 ORTHO05D006706 2.5e-22 109.8 145 49.7
Thecc.09G281400 Theobroma cacao HOM05D002338 ORTHO05D006706 2.5e-22 109.8 149 51.0
Glyma.12G185700 Glycine max HOM05D002338 ORTHO05D006706 3.3e-22 109.4 145 50.3
CiPaw.13G135000 Carya illinoinensis HOM05D002338 ORTHO05D006706 4.3e-22 109.0 145 50.3
QL01p012128 Quercus lobata HOM05D002338 ORTHO05D006706 4.3e-22 109.0 145 49.0
HanXRQChr01g0024511 Helianthus annuus HOM05D002338 ORTHO05D006706 5.6e-22 108.6 145 52.4
Lsat_1_v5_gn_1_59241 Lactuca sativa HOM05D002338 ORTHO05D006706 5.6e-22 108.6 155 45.8
Nitab4.5_0000755g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 5.6e-22 108.6 145 51.0
Lj3g0018005 Lotus japonicus HOM05D002338 ORTHO05D006706 7.4e-22 108.2 145 50.3
Ca_01654_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006706 9.6e-22 107.8 145 49.7
Glyma.13G315800 Glycine max HOM05D002338 ORTHO05D006706 9.6e-22 107.8 145 49.7
FAN25G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 1.3e-21 107.5 127 54.3
Glyma.08G074700 Glycine max HOM05D000446 ORTHO05D006706 1.3e-21 107.5 145 49.7
Nitab4.5_0006738g0010 Nicotiana tabacum HOM05D002338 ORTHO05D006706 1.3e-21 107.5 145 51.0
Peaxi162Scf00040g00113 Petunia axillaris HOM05D002338 ORTHO05D006706 1.3e-21 107.5 145 51.0
unitig_0.g555 Utricularia gibba HOM05D002338 ORTHO05D006706 1.3e-21 107.5 145 49.7
CiPaw.14G099400 Carya illinoinensis HOM05D002338 ORTHO05D006706 1.6e-21 107.1 145 50.3
Prupe.6G132000 Prunus persica HOM05D002338 ORTHO05D006706 1.6e-21 107.1 155 47.1
TAR633G2567 Trochodendron aralioides HOM05D002338 ORTHO05D006706 1.6e-21 107.1 149 48.3
Cc01_g08990 Coffea canephora HOM05D002338 ORTHO05D006706 2.1e-21 106.7 145 49.7
Medtr2g086600 Medicago truncatula HOM05D002338 ORTHO05D006706 2.1e-21 106.7 145 49.0
CAN.G1524.8 Capsicum annuum HOM05D002338 ORTHO05D006706 2.8e-21 106.3 145 50.3
Hma1.2p1_0587F.1_g184230 Hydrangea macrophylla HOM05D002338 ORTHO05D006706 2.8e-21 106.3 145 50.3
Rhsim01G0204800 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.8e-21 106.3 145 49.7
Cpa.g.sc195.1 Carica papaya HOM05D002338 ORTHO05D006706 3.7e-21 105.9 145 48.3
Oeu035434.1 Olea europaea HOM05D002338 ORTHO05D006706 4.8e-21 105.5 164 44.5
RcHm_v2.0_Chr5g0045651 Rosa chinensis HOM05D002338 ORTHO05D006706 4.8e-21 105.5 145 49.7
RcHm_v2.0_Chr5g0046351 Rosa chinensis HOM05D002338 ORTHO05D006706 4.8e-21 105.5 145 49.7
MSTRG.17703 Avicennia marina HOM05D002338 ORTHO05D006706 6.2e-21 105.1 145 47.6
DCAR_010340 Daucus carota HOM05D002338 ORTHO05D006706 6.2e-21 105.1 145 49.7
Nn2g14191 Nelumbo nucifera HOM05D002338 ORTHO05D006706 6.2e-21 105.1 145 48.3
Sed0026919 Sechium edule HOM05D002338 ORTHO05D006706 6.2e-21 105.1 145 49.7
Eucgr.J00500 Eucalyptus grandis HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 49.7
FAN21G3331 Fragaria x ananassa HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 49.7
Psat5g258120 Pisum sativum HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 48.3
Solyc11g068540.2 Solanum lycopersicum HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 49.7
Sopen11g027260 Solanum pennellii HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 49.7
PGSC0003DMG400026336 Solanum tuberosum HOM05D002338 ORTHO05D006706 8.1e-21 104.8 145 49.7
TWI79G1300 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 8.1e-21 104.8 149 47.0
MSTRG.12373 Avicennia marina HOM05D002338 ORTHO05D006706 1.1e-20 104.4 145 48.3
FvH4_3g25110 Fragaria vesca HOM05D002338 ORTHO05D006706 1.1e-20 104.4 145 49.7
FAN11G3385 Fragaria x ananassa HOM05D002338 ORTHO05D006706 1.1e-20 104.4 145 49.7
PGR119G2253 Punica granatum HOM05D002338 ORTHO05D006706 1.1e-20 104.4 145 49.0
TPR.G4472 Trifolium pratense HOM05D002338 ORTHO05D006706 1.4e-20 104.0 145 47.6
MD03G1147500 Malus domestica HOM05D002338 ORTHO05D006706 1.8e-20 103.6 145 49.7
SMO331G0008 Selaginella moellendorffii HOM05D002338 ORTHO05D006706 3.1e-20 102.8 145 48.3
Actinidia37079 Actinidia chinensis HOM05D002338 ORTHO05D006706 6.9e-20 101.7 145 49.0
CSS0028747 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 6.9e-20 101.7 165 44.8
SHI12384 Sapria himalayana HOM05D002338 ORTHO05D006706 6.9e-20 101.7 149 45.0
arahy.Tifrunner.gnm1.ann1.EN3ZRJ Arachis hypogaea HOM05D002338 ORTHO05D006706 1.2e-19 100.9 70 74.3
Ah.08g215660 Amaranthus hybridus HOM05D002338 ORTHO05D006706 1.5e-19 100.5 67 77.6
arahy.Tifrunner.gnm1.ann1.65JLCH Arachis hypogaea HOM05D002338 ORTHO05D006706 1.5e-19 100.5 145 50.3
PSO339G0254 Papaver somniferum HOM05D002338 ORTHO05D006706 1.5e-19 100.5 145 48.3
Aqoxy2G01110 Aquilegia oxysepala HOM05D002338 ORTHO05D006706 2.6e-19 99.8 145 47.6
PSO801G0423 Papaver somniferum HOM05D002338 ORTHO05D006706 2.6e-19 99.8 145 48.3
EL10Ac7g15831 Beta vulgaris HOM05D002338 ORTHO05D006706 4.5e-19 99.0 192 39.6
arahy.Tifrunner.gnm1.ann1.R0HYNC Arachis hypogaea HOM05D002338 ORTHO05D006706 5.8e-19 98.6 67 74.6
MD11G1166200 Malus domestica HOM05D002338 ORTHO05D006706 1.7e-18 97.1 67 73.1
Pp3c18_8260 Physcomitrium patens HOM05D002338 ORTHO05D006706 1.7e-18 97.1 155 43.9
Psat1g178360 Pisum sativum HOM05D002338 ORTHO05D006706 2.9e-18 96.3 67 71.6
CDE08G1107 Ceratophyllum demersum HOM05D002338 ORTHO05D006706 4.9e-18 95.5 145 46.2
ClCG01G012180 Citrullus lanatus HOM05D002338 ORTHO05D006706 4.9e-18 95.5 67 71.6
MELO3C027387.2 Cucumis melo HOM05D002338 ORTHO05D006706 4.9e-18 95.5 67 71.6
Mapoly0103s0045 Marchantia polymorpha HOM05D002338 ORTHO05D006706 1.1e-17 94.4 145 44.8
TWI75G0919 Tripterygium wilfordii HOM05D002338 ORTHO05D006706 1.4e-17 94.0 156 41.0
Atru.chr3.3215 Acer truncatum HOM05D002338 ORTHO05D006706 3.2e-17 92.8 146 45.9
CsaV3_1G015920 Cucumis sativus L. HOM05D002338 ORTHO05D006706 5.5e-17 92.0 66 71.2
SEGI_19864 Sequoiadendron giganteum HOM05D002338 ORTHO05D006706 4.6e-16 89.0 67 67.2
CBR_g2849 Chara braunii HOM05D002338 ORTHO05D000013 6.0e-16 88.6 145 42.8
A07p18210 Brassica napus HOM05D002338 ORTHO05D006706 1.8e-15 87.0 70 70.0
AagrBONN_evm.TU.Sc2ySwM_362.1450 Anthoceros agrestis HOM05D002338 ORTHO05D006706 3.9e-15 85.9 148 41.2
Os02g0533900 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006706 3.9e-15 85.9 67 64.2
Potri.009G162600 Populus trichocarpa HOM05D002338 ORTHO05D006706 1.9e-14 83.6 65 66.2
BraA07t29537Z Brassica rapa HOM05D002338 ORTHO05D006706 7.4e-14 81.6 66 66.7
CsaV3_1G015010 Cucumis sativus L. HOM05D002338 ORTHO05D006706 2.8e-13 79.7 131 47.3
arahy.Tifrunner.gnm1.ann1.AW3P0S Arachis hypogaea HOM05D002338 ORTHO05D006706 2.5e-09 66.6 58 67.2
CSS0011924 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006706 7.9e-08 61.6 136 38.2
Manes.11G162650 Manihot esculenta HOM05D002338 ORTHO05D006706 2.3e-07 60.1 62 53.2
arahy.Tifrunner.gnm1.ann1.MKCD0D Arachis hypogaea HOM05D002338 ORTHO05D006706 3.9e-07 59.3 54 63.0
Zm00001eb242790 Zea mays HOM05D002338 ORTHO05D006706 7.4e-06 55.1 48 60.4


User provided reference genes

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