Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p20520 Brassica napus HOM05D003027 ORTHO05D041698 1.2e-104 383.6 261 100.0
BolC4t23577H Brassica oleracea HOM05D003027 ORTHO05D041698 4.5e-64 248.8 189 99.5
C04p02350 Brassica napus HOM05D003027 ORTHO05D003455 1.3e-18 97.8 129 48.8
BolC4t21881H Brassica oleracea HOM05D003027 ORTHO05D003455 1.3e-18 97.8 129 48.8
A04p31300 Brassica napus HOM05D003027 ORTHO05D003455 1.7e-18 97.4 141 46.8
BraA04t18587Z Brassica rapa HOM05D003027 ORTHO05D003455 1.7e-18 97.4 141 46.8
Thhalv10016317m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 2.2e-18 97.1 129 48.8
AL4G38920 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.9e-18 96.7 129 48.1
Carub.0004s2327 Capsella rubella HOM05D003027 ORTHO05D003455 2.9e-18 96.7 129 48.1
CARHR136060 Cardamine hirsuta HOM05D003027 ORTHO05D003455 2.9e-18 96.7 129 48.1
BcaC02g12742 Brassica carinata HOM05D003027 ORTHO05D003455 4.9e-18 95.9 129 47.3
Sp4g23270 Schrenkiella parvula HOM05D003027 ORTHO05D003455 4.9e-18 95.9 129 47.3
C04p68700 Brassica napus HOM05D003027 ORTHO05D003455 8.3e-18 95.1 148 44.6
BolC4t28375H Brassica oleracea HOM05D003027 ORTHO05D003455 8.3e-18 95.1 148 44.6
BcaC02g11096 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-17 94.7 111 71.2
BcaC02g12863 Brassica carinata HOM05D003027 ORTHO05D003455 1.1e-17 94.7 129 47.3
AT2G40950 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 1.9e-17 94.0 145 44.8
Carub.0005s2341 Capsella rubella HOM05D003027 ORTHO05D003455 1.2e-13 81.3 125 41.6
Aa31LG3G1070 Aethionema arabicum HOM05D003027 ORTHO05D003455 2.1e-13 80.5 182 36.8
AL5G38030 Arabidopsis lyrata HOM05D003027 ORTHO05D003455 2.8e-13 80.1 166 36.7
BcaC04g21686 Brassica carinata HOM05D003027 ORTHO05D003455 8.1e-13 78.6 97 53.6
Sp5g05900 Schrenkiella parvula HOM05D003027 ORTHO05D003455 8.1e-13 78.6 122 41.8
Thhalv10005827m.g Eutrema salsugineum HOM05D003027 ORTHO05D003455 1.8e-12 77.4 127 40.9
C09p28840 Brassica napus HOM05D003027 ORTHO05D003455 4.0e-12 76.3 143 41.3
Psat0s1940g0120 Pisum sativum HOM05D003027 ORTHO05D003455 1.2e-11 74.7 152 33.6
CARHR166770 Cardamine hirsuta HOM05D003027 ORTHO05D003455 3.4e-11 73.2 126 38.9
Peaxi162Scf00076g00222 Petunia axillaris HOM05D003027 ORTHO05D003455 3.4e-11 73.2 135 34.8
Aa31LG10G11460 Aethionema arabicum HOM05D003027 ORTHO05D003455 7.6e-11 72.0 128 39.8
BcaC02g09858 Brassica carinata HOM05D003027 ORTHO05D003455 9.9e-11 71.6 123 39.0
BcaC07g37745 Brassica carinata HOM05D003027 ORTHO05D003455 1.3e-10 71.2 37 89.2
C04p35840 Brassica napus HOM05D003027 ORTHO05D003455 2.2e-10 70.5 123 39.0
BolC4t25216H Brassica oleracea HOM05D003027 ORTHO05D003455 2.2e-10 70.5 123 39.0
THA.LOC104824380 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 2.2e-10 70.5 139 36.7
BraA09t37858Z Brassica rapa HOM05D003027 ORTHO05D003455 2.9e-10 70.1 42 78.6
VMungo1383G0888 Vigna mungo HOM05D003027 ORTHO05D003455 4.9e-10 69.3 130 34.6
CANSAT64G1028 Cannabis sativa HOM05D003027 ORTHO05D003455 8.4e-10 68.6 138 37.0
Migut.K00152 Erythranthe guttata HOM05D003027 ORTHO05D003455 8.4e-10 68.6 134 35.8
Ca_08358_v3 Cicer arietinum L. HOM05D003027 ORTHO05D003455 1.1e-09 68.2 130 35.4
Eucgr.A02199 Eucalyptus grandis HOM05D003027 ORTHO05D003455 1.1e-09 68.2 133 36.1
Potri.016G032400 Populus trichocarpa HOM05D003027 ORTHO05D003455 1.1e-09 68.2 134 35.8
Sabra16G0035700 Salix brachista HOM05D003027 ORTHO05D003455 1.1e-09 68.2 134 36.6
CSS0006760 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.4e-09 67.8 133 34.6
CSS0013065 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.4e-09 67.8 133 34.6
Cfa019972 Carpinus fangiana HOM05D003027 ORTHO05D003455 1.4e-09 67.8 134 37.3
CiPaw.10G042900 Carya illinoinensis HOM05D003027 ORTHO05D003455 1.4e-09 67.8 135 36.3
Medtr7g088890 Medicago truncatula HOM05D003027 ORTHO05D003455 1.4e-09 67.8 130 34.6
Peaxi162Scf00003g05235 Petunia axillaris HOM05D003027 ORTHO05D003455 1.9e-09 67.4 136 36.8
Atru.chr1.1410 Acer truncatum HOM05D003027 ORTHO05D003455 2.4e-09 67.0 130 39.2
Haze_20266 Corylus avellana HOM05D003027 ORTHO05D003455 3.2e-09 66.6 135 37.0
Nitab4.5_0005963g0050 Nicotiana tabacum HOM05D003027 ORTHO05D003455 3.2e-09 66.6 136 33.1
THA.LOC104803232 Tarenaya hassleriana HOM05D003027 ORTHO05D003455 3.2e-09 66.6 144 37.5
BcaB02g08358 Brassica carinata HOM05D003027 ORTHO05D003455 5.4e-09 65.9 114 40.4
BolC9t55746H Brassica oleracea HOM05D003027 ORTHO05D003455 7.1e-09 65.5 119 40.3
TWI53G2142 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 7.1e-09 65.5 134 39.6
CAN.G569.64 Capsicum annuum HOM05D003027 ORTHO05D003455 9.2e-09 65.1 131 36.6
Glyma.03G123200 Glycine max HOM05D003027 ORTHO05D003455 9.2e-09 65.1 132 35.6
QL07p012799 Quercus lobata HOM05D003027 ORTHO05D003455 1.2e-08 64.7 134 35.8
Sed0011831 Sechium edule HOM05D003027 ORTHO05D003455 1.2e-08 64.7 136 36.8
Prupe.2G020400 Prunus persica HOM05D003027 ORTHO05D003455 1.6e-08 64.3 135 38.5
CiPaw.09G050600 Carya illinoinensis HOM05D003027 ORTHO05D003455 2.1e-08 63.9 136 37.5
QL07p012681 Quercus lobata HOM05D003027 ORTHO05D003455 2.1e-08 63.9 134 35.8
TPR.G22687 Trifolium pratense HOM05D003027 ORTHO05D003455 2.1e-08 63.9 130 33.1
CAN.G960.76 Capsicum annuum HOM05D003027 ORTHO05D003455 2.7e-08 63.5 134 35.8
Phvul.001G119300 Phaseolus vulgaris HOM05D003027 ORTHO05D003455 2.7e-08 63.5 132 34.1
TWI77G0499 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 2.7e-08 63.5 138 37.0
Nitab4.5_0000869g0140 Nicotiana tabacum HOM05D003027 ORTHO05D003455 3.5e-08 63.2 134 32.8
RcHm_v2.0_Chr4g0433931 Rosa chinensis HOM05D003027 ORTHO05D003455 3.5e-08 63.2 134 37.3
Sc25g0005470 Simmondsia chinensis HOM05D003027 ORTHO05D003455 3.5e-08 63.2 127 36.2
PGSC0003DMG400007175 Solanum tuberosum HOM05D003027 ORTHO05D003455 3.5e-08 63.2 134 36.6
Thecc.05G123000 Theobroma cacao HOM05D003027 ORTHO05D003455 3.5e-08 63.2 133 35.3
Cc06_g20180 Coffea canephora HOM05D003027 ORTHO05D003455 4.6e-08 62.8 134 34.3
MSTRG.19782 Avicennia marina HOM05D003027 ORTHO05D003455 6.0e-08 62.4 131 32.8
MELO3C009730.2 Cucumis melo HOM05D003027 ORTHO05D003455 6.0e-08 62.4 135 33.3
CsaV3_3G039880 Cucumis sativus L. HOM05D003027 ORTHO05D003455 6.0e-08 62.4 135 33.3
Dinv20764 Davidia involucrata HOM05D003027 ORTHO05D003455 6.0e-08 62.4 137 35.8
GSVIVG01025788001 Vitis vinifera HOM05D003027 ORTHO05D003455 6.0e-08 62.4 185 33.5
DCAR_013537 Daucus carota HOM05D003027 ORTHO05D003455 7.8e-08 62.0 134 34.3
Duzib106G1517 Durio zibethinus HOM05D003027 ORTHO05D003455 7.8e-08 62.0 133 34.6
FAN12G3806 Fragaria x ananassa HOM05D003027 ORTHO05D003455 7.8e-08 62.0 132 37.9
Glyma.19G126800 Glycine max HOM05D003027 ORTHO05D003455 7.8e-08 62.0 150 33.3
Hma1.2p1_1246F.1_g270160 Hydrangea macrophylla HOM05D003027 ORTHO05D003455 7.8e-08 62.0 132 37.1
Lsat_1_v5_gn_5_157880 Lactuca sativa HOM05D003027 ORTHO05D003455 7.8e-08 62.0 140 32.9
MD07G1018800 Malus domestica HOM05D003027 ORTHO05D003455 7.8e-08 62.0 134 36.6
Duzib128G0339 Durio zibethinus HOM05D003027 ORTHO05D003455 1.0e-07 61.6 133 33.8
Lj1g0009474 Lotus japonicus HOM05D003027 ORTHO05D003455 1.0e-07 61.6 130 32.3
EL10Ac3g07277 Beta vulgaris HOM05D003027 ORTHO05D003455 1.3e-07 61.2 129 35.7
Sopen10g028950 Solanum pennellii HOM05D003027 ORTHO05D003455 1.3e-07 61.2 134 35.8
MSTRG.26171 Avicennia marina HOM05D003027 ORTHO05D003455 1.7e-07 60.8 136 33.8
CSS0031087 Camellia sinensis var. sinensis HOM05D003027 ORTHO05D003455 1.7e-07 60.8 133 32.3
COL.COLO4_26642 Corchorus olitorius HOM05D003027 ORTHO05D003455 1.7e-07 60.8 136 36.0
ECA248G3907 Erigeron canadensis HOM05D003027 ORTHO05D003455 1.7e-07 60.8 132 36.4
FAN22G1384 Fragaria x ananassa HOM05D003027 ORTHO05D003455 1.7e-07 60.8 133 37.6
SGA_v2.0_scaffold69G23173 Striga asiatica HOM05D003027 ORTHO05D003455 1.7e-07 60.8 147 34.7
FAN07G2582 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.3e-07 60.5 133 36.8
FAN12G2249 Fragaria x ananassa HOM05D003027 ORTHO05D003455 2.3e-07 60.5 133 36.8
Lj1A1084T71 Lonicera japonica HOM05D003027 ORTHO05D003455 2.3e-07 60.5 138 34.1
PSO384G3381 Papaver somniferum HOM05D003027 ORTHO05D003455 2.3e-07 60.5 129 34.9
arahy.Tifrunner.gnm1.ann1.1QMW5J Arachis hypogaea HOM05D003027 ORTHO05D003455 3.0e-07 60.1 130 32.3
COL.COLO4_19389 Corchorus olitorius HOM05D003027 ORTHO05D003455 3.9e-07 59.7 164 33.5
PSO339G5716 Papaver somniferum HOM05D003027 ORTHO05D003455 3.9e-07 59.7 130 34.6
arahy.Tifrunner.gnm1.ann1.470EJV Arachis hypogaea HOM05D003027 ORTHO05D003455 5.1e-07 59.3 130 32.3
ClCG10G016460 Citrullus lanatus HOM05D003027 ORTHO05D003455 5.1e-07 59.3 134 32.8
FvH4_4g26350 Fragaria vesca HOM05D003027 ORTHO05D003455 5.1e-07 59.3 133 36.8
FAN17G2150 Fragaria x ananassa HOM05D003027 ORTHO05D003455 5.1e-07 59.3 133 36.1
Gohir.A13G001500 Gossypium hirsutum HOM05D003027 ORTHO05D003455 5.1e-07 59.3 180 30.6
Gohir.D13G000900 Gossypium hirsutum HOM05D003027 ORTHO05D003455 5.1e-07 59.3 180 30.6
Gorai.013G000800 Gossypium raimondii HOM05D003027 ORTHO05D003455 5.1e-07 59.3 180 30.6
SalBow1G6916 Salvia bowleyana HOM05D003027 ORTHO05D003455 5.1e-07 59.3 135 35.6
SGA_v2.0_scaffold106G30539 Striga asiatica HOM05D003027 ORTHO05D003455 5.1e-07 59.3 145 34.5
unitig_744.g24169 Utricularia gibba HOM05D003027 ORTHO05D003455 5.1e-07 59.3 131 35.1
AT3G56660 Arabidopsis thaliana HOM05D003027 ORTHO05D003455 6.6e-07 58.9 39 66.7
Dinv20756 Davidia involucrata HOM05D003027 ORTHO05D003455 6.6e-07 58.9 134 35.8
Lalb_Chr24g0400521 Lupinus albus HOM05D003027 ORTHO05D003455 8.6e-07 58.5 130 33.1
Potri.006G034500 Populus trichocarpa HOM05D003027 ORTHO05D003455 8.6e-07 58.5 134 32.1
AUR62018385 Chenopodium quinoa HOM05D003027 ORTHO05D003455 1.1e-06 58.2 137 31.4
Nitab4.5_0004697g0100 Nicotiana tabacum HOM05D003027 ORTHO05D003455 1.5e-06 57.8 133 32.3
SalBow6G5171 Salvia bowleyana HOM05D003027 ORTHO05D003455 1.5e-06 57.8 130 33.8
MSTRG.6308 Avicennia marina HOM05D003027 ORTHO05D003455 1.9e-06 57.4 130 33.1
Sabra06G0023000 Salix brachista HOM05D003027 ORTHO05D003455 1.9e-06 57.4 134 32.1
DCAR_020597 Daucus carota HOM05D003027 ORTHO05D003455 2.5e-06 57.0 135 32.6
vmacro08992 Vaccinium macrocarpon HOM05D003027 ORTHO05D003455 2.5e-06 57.0 134 32.8
Ah.13g077130 Amaranthus hybridus HOM05D003027 ORTHO05D003455 3.3e-06 56.6 134 34.3
unitig_21.g20679 Utricularia gibba HOM05D003027 ORTHO05D003455 3.3e-06 56.6 132 33.3
Ah.04g150710 Amaranthus hybridus HOM05D003027 ORTHO05D003455 4.3e-06 56.2 133 34.6
HanXRQChr03g0061511 Helianthus annuus HOM05D003027 ORTHO05D003455 4.3e-06 56.2 143 35.0
TWI74G0015 Tripterygium wilfordii HOM05D003027 ORTHO05D003455 4.3e-06 56.2 134 35.8
Aqoxy1G00075 Aquilegia oxysepala HOM05D003027 ORTHO05D003455 7.3e-06 55.5 136 32.4
Cpa.g.sc92.68 Carica papaya HOM05D003027 ORTHO05D003455 7.3e-06 55.5 37 73.0
Ciclev10011169m.g Citrus clementina HOM05D003027 ORTHO05D003455 9.6e-06 55.1 37 70.3
Dinv36122 Davidia involucrata HOM05D003027 ORTHO05D003455 9.6e-06 55.1 135 33.3
Migut.J01624 Erythranthe guttata HOM05D003027 ORTHO05D003455 9.6e-06 55.1 157 30.6
HanXRQChr13g0388001 Helianthus annuus HOM05D003027 ORTHO05D003455 9.6e-06 55.1 146 32.2


User provided reference genes

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