Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p18390 Brassica napus HOM05D000469 ORTHO05D000323 1.7e-140 502.7 255 100.0
BcaC04g19532 Brassica carinata HOM05D000469 ORTHO05D000323 7.4e-96 354.4 185 97.8
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 9.7e-96 354.0 196 93.9
BolC7t41616H Brassica oleracea HOM05D000469 ORTHO05D000323 2.8e-87 325.9 199 85.9
BcaC06g35743 Brassica carinata HOM05D000469 ORTHO05D000323 1.2e-74 283.9 188 81.4
C01p10410 Brassica napus HOM05D000469 ORTHO05D000323 3.6e-74 282.3 167 88.6
BcaB03g14603 Brassica carinata HOM05D000469 ORTHO05D000323 7.5e-72 274.6 203 73.4
BraA03t13483Z Brassica rapa HOM05D000469 ORTHO05D000323 4.9e-71 271.9 204 74.0
BcaC01g03349 Brassica carinata HOM05D000469 ORTHO05D000323 8.3e-71 271.2 214 70.6
A03p43450 Brassica napus HOM05D000469 ORTHO05D000323 1.1e-70 270.8 204 73.5
C03p53410 Brassica napus HOM05D000469 ORTHO05D000323 2.3e-68 263.1 206 71.4
BolC3t17601H Brassica oleracea HOM05D000469 ORTHO05D000323 2.3e-68 263.1 206 71.4
Sp3g21790 Schrenkiella parvula HOM05D000469 ORTHO05D000323 2.5e-67 259.6 203 71.4
BolC1t01001H Brassica oleracea HOM05D000469 ORTHO05D000323 4.7e-66 255.4 172 80.8
BcaB04g20403 Brassica carinata HOM05D000469 ORTHO05D000323 1.6e-61 240.4 208 68.3
BraA01t03233Z Brassica rapa HOM05D000469 ORTHO05D000323 1.0e-60 237.7 206 66.0
AL3G39120 Arabidopsis lyrata HOM05D000469 ORTHO05D000323 6.6e-60 235.0 210 67.6
AT3G24140 Arabidopsis thaliana HOM05D000469 ORTHO05D000323 8.9e-57 224.6 210 65.2
A01p31080 Brassica napus HOM05D000469 ORTHO05D000323 3.4e-56 222.6 206 62.6
BolC1t03911H Brassica oleracea HOM05D000469 ORTHO05D000323 9.8e-56 221.1 194 64.4
C01p39630 Brassica napus HOM05D000469 ORTHO05D000323 1.7e-55 220.3 206 62.1
Thhalv10002558m.g Eutrema salsugineum HOM05D000469 ORTHO05D000323 1.7e-55 220.3 172 70.9
Carub.0003s2436 Capsella rubella HOM05D000469 ORTHO05D000323 3.7e-55 219.2 211 62.6
BraA05t21467Z Brassica rapa HOM05D018358 ORTHO05D000323 8.3e-55 218.0 145 77.9
BcaC06g35615 Brassica carinata HOM05D000469 ORTHO05D000323 1.3e-52 210.7 192 61.5
C07p12940 Brassica napus HOM05D000469 ORTHO05D000323 1.3e-52 210.7 192 61.5
BolC7t41778H Brassica oleracea HOM05D000469 ORTHO05D000323 1.3e-52 210.7 192 61.5
BcaB06g26583 Brassica carinata HOM05D000469 ORTHO05D000323 1.2e-50 204.1 192 60.4
BraA07t28613Z Brassica rapa HOM05D000469 ORTHO05D000323 6.2e-50 201.8 192 58.9
CARHR100060 Cardamine hirsuta HOM05D000469 ORTHO05D000323 3.7e-47 192.6 182 63.7
A07p08300 Brassica napus HOM05D000469 ORTHO05D000323 8.6e-44 181.4 172 59.9
BcaC09g51698 Brassica carinata HOM05D000469 ORTHO05D000323 1.9e-43 180.3 132 76.5
Sp3g21660 Schrenkiella parvula HOM05D000469 ORTHO05D000323 3.4e-40 169.5 169 60.4
BcaB01g01740 Brassica carinata HOM05D000469 ORTHO05D000323 3.8e-39 166.0 119 78.2
AL3G40120 Arabidopsis lyrata HOM05D000469 ORTHO05D000323 2.1e-37 160.2 121 75.2
A01p31170 Brassica napus HOM05D000469 ORTHO05D000323 3.3e-35 152.9 200 50.0
Aa31LG8G10720 Aethionema arabicum HOM05D000469 ORTHO05D000323 2.1e-34 150.2 204 52.5
Thhalv10002990m.g Eutrema salsugineum HOM05D000469 ORTHO05D000323 1.5e-32 144.1 189 49.2
BcaB06g27213 Brassica carinata HOM05D000469 ORTHO05D000323 9.9e-32 141.4 151 58.3
C01p39720 Brassica napus HOM05D000469 ORTHO05D000323 8.4e-31 138.3 195 47.7
BcaB04g20414 Brassica carinata HOM05D000469 ORTHO05D000323 4.0e-25 119.4 200 44.0
Thecc.04G205100 Theobroma cacao HOM05D000469 ORTHO05D000323 4.2e-22 109.4 195 46.7
Manes.03G148500 Manihot esculenta HOM05D000469 ORTHO05D000323 3.5e-21 106.3 213 40.8
Lalb_Chr04g0255091 Lupinus albus HOM05D000469 ORTHO05D000323 6.0e-21 105.5 223 41.3
CiPaw.02G066700 Carya illinoinensis HOM05D000469 ORTHO05D000323 7.9e-21 105.1 204 42.2
Cc03_g07740 Coffea canephora HOM05D000469 ORTHO05D000323 1.3e-20 104.4 189 43.9
Potri.001G314400 Populus trichocarpa HOM05D000469 ORTHO05D000323 1.8e-20 104.0 199 44.7
Duzib151G0523 Durio zibethinus HOM05D000469 ORTHO05D000323 3.0e-20 103.2 197 46.2
Gohir.A10G123300 Gossypium hirsutum HOM05D000469 ORTHO05D000323 3.9e-20 102.8 183 46.4
Oeu016730.1 Olea europaea HOM05D000469 ORTHO05D000323 3.9e-20 102.8 208 40.4
Lalb_Chr10g0099531 Lupinus albus HOM05D000469 ORTHO05D000323 6.7e-20 102.1 183 44.8
Potri.017G054500 Populus trichocarpa HOM05D000469 ORTHO05D000323 1.1e-19 101.3 199 42.2
Gohir.D10G142500 Gossypium hirsutum HOM05D000469 ORTHO05D000323 1.5e-19 100.9 185 46.5
Gorai.011G159100 Gossypium raimondii HOM05D000469 ORTHO05D000323 1.9e-19 100.5 183 46.4
Phvul.003G033900 Phaseolus vulgaris HOM05D000469 ORTHO05D000323 1.9e-19 100.5 211 42.7
Manes.15G052900 Manihot esculenta HOM05D000469 ORTHO05D000323 3.3e-19 99.8 167 46.7
VMungo1215G1318 Vigna mungo HOM05D000469 ORTHO05D000323 4.3e-19 99.4 151 49.0
Ca_05105_v3 Cicer arietinum L. HOM05D000469 ORTHO05D000323 2.1e-18 97.1 142 49.3
Lj6A559T13 Lonicera japonica HOM05D000469 ORTHO05D000323 2.1e-18 97.1 169 42.6
Dinv38242 Davidia involucrata HOM05D000469 ORTHO05D000323 2.8e-18 96.7 198 44.4
Aqoxy2G03880 Aquilegia oxysepala HOM05D000469 ORTHO05D000323 3.7e-18 96.3 205 42.0
CSS0005073 Camellia sinensis var. sinensis HOM05D000469 ORTHO05D000323 3.7e-18 96.3 196 41.8
Sabra17G0046300 Salix brachista HOM05D000469 ORTHO05D000323 3.7e-18 96.3 196 42.3
Prupe.1G006600 Prunus persica HOM05D000469 ORTHO05D000323 6.2e-18 95.5 154 43.5
TAR636G1497 Trochodendron aralioides HOM05D000469 ORTHO05D000323 8.1e-18 95.1 207 39.1
FAN07G2256 Fragaria x ananassa HOM05D000469 ORTHO05D000323 1.1e-17 94.7 154 44.8
ECA238G0939 Erigeron canadensis HOM05D000469 ORTHO05D000323 1.4e-17 94.4 140 47.1
THA.LOC104804813 Tarenaya hassleriana HOM05D000469 ORTHO05D000323 1.4e-17 94.4 192 43.2
THA.LOC104808716 Tarenaya hassleriana HOM05D000469 ORTHO05D000323 1.4e-17 94.4 200 40.5
Cpa.g.sc59.132 Carica papaya HOM05D000469 ORTHO05D000323 2.4e-17 93.6 151 47.7
QL06p024336 Quercus lobata HOM05D000469 ORTHO05D000323 2.4e-17 93.6 140 49.3
FvH4_1g23290 Fragaria vesca HOM05D000469 ORTHO05D000323 3.1e-17 93.2 154 46.1
FvH4_4g15850 Fragaria vesca HOM05D000469 ORTHO05D000323 3.1e-17 93.2 154 46.1
FAN19G0823 Fragaria x ananassa HOM05D000469 ORTHO05D000323 3.1e-17 93.2 155 45.2
FAN12G0441 Fragaria x ananassa HOM05D000469 ORTHO05D000323 6.9e-17 92.0 154 46.1
Oeu018222.2 Olea europaea HOM05D000469 ORTHO05D000323 6.9e-17 92.0 137 48.2
RcHm_v2.0_Chr4g0415421 Rosa chinensis HOM05D000469 ORTHO05D000323 9.0e-17 91.7 163 43.6
Haze_11603 Corylus avellana HOM05D000469 ORTHO05D000323 1.2e-16 91.3 142 47.9
Nn3g19966 Nelumbo nucifera HOM05D000469 ORTHO05D000323 1.2e-16 91.3 188 41.5
Ciclev10005031m.g Citrus clementina HOM05D000469 ORTHO05D000323 1.5e-16 90.9 139 45.3
Lj6A570G14 Lonicera japonica HOM05D000469 ORTHO05D000323 2.6e-16 90.1 169 41.4
MSTRG.9819 Avicennia marina HOM05D000469 ORTHO05D000323 3.4e-16 89.7 179 39.7
Hma1.2p1_0187F.1_g082060 Hydrangea macrophylla HOM05D000469 ORTHO05D000323 3.4e-16 89.7 136 46.3
MD04G1006400 Malus domestica HOM05D000469 ORTHO05D000323 3.4e-16 89.7 165 46.1
Nn1g07856 Nelumbo nucifera HOM05D000469 ORTHO05D000323 3.4e-16 89.7 160 46.2
Peaxi162Scf00423g00219 Petunia axillaris HOM05D000469 ORTHO05D000323 3.4e-16 89.7 185 41.1
Sabra16G0198900 Salix brachista HOM05D000469 ORTHO05D000323 4.5e-16 89.4 200 40.5
Atru.chr4.1713 Acer truncatum HOM05D000469 ORTHO05D000323 5.8e-16 89.0 155 40.0
DCAR_026607 Daucus carota HOM05D000469 ORTHO05D000323 5.8e-16 89.0 164 43.9
HanXRQChr14g0435881 Helianthus annuus HOM05D000469 ORTHO05D000323 7.6e-16 88.6 158 45.6
TWI73G1139 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 7.6e-16 88.6 194 38.7
TAR365G0065 Trochodendron aralioides HOM05D000469 ORTHO05D000323 7.6e-16 88.6 203 38.9
FAN17G1720 Fragaria x ananassa HOM05D000469 ORTHO05D000323 2.2e-15 87.0 139 47.5
Nitab4.5_0003502g0010 Nicotiana tabacum HOM05D000469 ORTHO05D000323 6.5e-15 85.5 185 39.5
Psat0s3505g0040 Pisum sativum HOM05D000469 ORTHO05D000323 6.5e-15 85.5 137 47.4
Dinv29589 Davidia involucrata HOM05D000469 ORTHO05D000323 8.4e-15 85.1 145 44.8
Eucgr.H02788 Eucalyptus grandis HOM05D000469 ORTHO05D000323 8.4e-15 85.1 130 45.4
PGR083G2370 Punica granatum HOM05D000469 ORTHO05D000323 1.1e-14 84.7 191 39.8
Glyma.01G093400 Glycine max HOM05D000469 ORTHO05D000323 1.9e-14 84.0 157 43.3
Lsat_1_v5_gn_2_44720 Lactuca sativa HOM05D000469 ORTHO05D000323 2.5e-14 83.6 141 44.0
Glyma.02G129100 Glycine max HOM05D000469 ORTHO05D000323 3.2e-14 83.2 156 42.3
Lj2g0022928 Lotus japonicus HOM05D000469 ORTHO05D000323 3.2e-14 83.2 217 37.3
Migut.G00674 Erythranthe guttata HOM05D000469 ORTHO05D000323 4.2e-14 82.8 143 45.5
TWI09G1147 Tripterygium wilfordii HOM05D000469 ORTHO05D000323 4.2e-14 82.8 200 39.0
Actinidia35869 Actinidia chinensis HOM05D000469 ORTHO05D000323 3.5e-13 79.7 189 38.1
Nitab4.5_0002260g0010 Nicotiana tabacum HOM05D000469 ORTHO05D000323 3.5e-13 79.7 187 38.0
Medtr0194s0050 Medicago truncatula HOM05D000469 ORTHO05D000323 1.0e-12 78.2 144 44.4
SalBow8G4815 Salvia bowleyana HOM05D000469 ORTHO05D000323 1.3e-12 77.8 186 38.2
Actinidia37007 Actinidia chinensis HOM05D000469 ORTHO05D000323 2.3e-12 77.0 191 39.8
HanXRQChr15g0484281 Helianthus annuus HOM05D000469 ORTHO05D000323 8.7e-12 75.1 157 40.8
SGA_v2.0_scaffold57G20124 Striga asiatica HOM05D000469 ORTHO05D000323 1.9e-11 73.9 142 42.3
arahy.Tifrunner.gnm1.ann1.LE4XQH Arachis hypogaea HOM05D000469 ORTHO05D000323 3.3e-11 73.2 177 37.3
arahy.Tifrunner.gnm1.ann1.H4P5M1 Arachis hypogaea HOM05D000469 ORTHO05D000323 9.6e-11 71.6 173 37.6
GSVIVG01021074001 Vitis vinifera HOM05D000469 ORTHO05D000323 2.1e-10 70.5 185 38.4
COL.COLO4_10273 Corchorus olitorius HOM05D000469 ORTHO05D000323 6.3e-10 68.9 224 34.8
Carub.0004s2235 Capsella rubella HOM05D000377 ORTHO05D002224 8.2e-10 68.6 42 73.8
BcaB02g09045 Brassica carinata HOM05D000377 ORTHO05D002224 1.1e-09 68.2 42 73.8
BcaC02g12130 Brassica carinata HOM05D000377 ORTHO05D002224 1.1e-09 68.2 42 73.8
C04p07230 Brassica napus HOM05D000377 ORTHO05D002224 1.1e-09 68.2 42 73.8
BolC4t22348H Brassica oleracea HOM05D000377 ORTHO05D002224 1.1e-09 68.2 42 73.8
Sp4g22490 Schrenkiella parvula HOM05D000377 ORTHO05D002224 1.4e-09 67.8 42 73.8
Sopen05g032160 Solanum pennellii HOM05D000469 ORTHO05D000323 1.4e-09 67.8 187 36.9
Aa31LG5G19430 Aethionema arabicum HOM05D000377 ORTHO05D002224 2.4e-09 67.0 42 71.4
BcaB01g03567 Brassica carinata HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
BcaC01g05427 Brassica carinata HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
A03p22580 Brassica napus HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
C03p26770 Brassica napus HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
BolC3t15062H Brassica oleracea HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
BraA03t11484Z Brassica rapa HOM05D000377 ORTHO05D002224 2.4e-09 67.0 43 79.1
AL4G37850 Arabidopsis lyrata HOM05D000377 ORTHO05D002224 6.9e-09 65.5 42 76.2
AT2G40140 Arabidopsis thaliana HOM05D000377 ORTHO05D002224 6.9e-09 65.5 42 76.2
Thhalv10016372m.g Eutrema salsugineum HOM05D000377 ORTHO05D002224 6.9e-09 65.5 42 71.4
CARHR135150 Cardamine hirsuta HOM05D000377 ORTHO05D002224 1.2e-08 64.7 42 69.0
Ah.09g237230 Amaranthus hybridus HOM05D000469 ORTHO05D000323 1.5e-08 64.3 167 40.1
A05p06270 Brassica napus HOM05D000377 ORTHO05D002224 1.5e-08 64.3 42 73.8
BraA05t19595Z Brassica rapa HOM05D000377 ORTHO05D002224 1.5e-08 64.3 42 73.8
PGSC0003DMG400015760 Solanum tuberosum HOM05D000469 ORTHO05D000323 2.0e-08 63.9 187 36.4
BcaC02g11599 Brassica carinata HOM05D000377 ORTHO05D002224 5.8e-08 62.4 42 69.0
C04p13530 Brassica napus HOM05D000377 ORTHO05D002224 5.8e-08 62.4 42 69.0
SEGI_34735 Sequoiadendron giganteum HOM05D000469 ORTHO05D000323 5.8e-08 62.4 180 34.4
TPR.G19646 Trifolium pratense HOM05D000469 ORTHO05D000323 7.6e-08 62.0 148 37.2
CAN.G765.19 Capsicum annuum HOM05D000469 ORTHO05D000323 1.0e-07 61.6 189 37.6
Hund08029 Selenicereus undatus HOM05D000469 ORTHO05D000323 1.3e-07 61.2 174 36.2
CsaV3_3G011010 Cucumis sativus L. HOM05D000469 ORTHO05D000323 2.2e-07 60.5 203 33.5
MELO3C006315.2 Cucumis melo HOM05D000469 ORTHO05D000323 3.8e-07 59.7 195 31.8
PSO063G5613 Papaver somniferum HOM05D000469 ORTHO05D000323 8.4e-07 58.5 179 35.8
PSO017G3384 Papaver somniferum HOM05D000469 ORTHO05D000323 1.1e-06 58.2 226 32.3
AUR62020815 Chenopodium quinoa HOM05D000469 ORTHO05D000323 1.4e-06 57.8 195 32.3
Rhsim09G0055600 Rhododendron simsii HOM05D000469 ORTHO05D000323 1.4e-06 57.8 142 38.7
CANSAT78G0913 Cannabis sativa HOM05D000469 ORTHO05D000323 2.5e-06 57.0 143 35.7
Sp5g06550 Schrenkiella parvula HOM05D000377 ORTHO05D002224 5.5e-06 55.8 44 63.6
CDE09G0798 Ceratophyllum demersum HOM05D000469 ORTHO05D004276 7.2e-06 55.5 130 36.2
vmacro00482 Vaccinium macrocarpon HOM05D000469 ORTHO05D000323 7.2e-06 55.5 144 36.1
THA.LOC104810104 Tarenaya hassleriana HOM05D000377 ORTHO05D002224 9.3e-06 55.1 43 65.1


User provided reference genes

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