Gene: AT2G40140
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G40140
- Transcript Identifier AT2G40140.1
- Gene Type Coding gene
- Location Chr2 : 16772537-16774330 : positive
Gene Family Information
- ID HOM05D000377
- #Genes/#Species 1292/100
- Phylogenetic origin
- ID ORTHO05D002224
- #Genes/#Species 306/89
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G40140.1
- symbol CZF1
- uniprot Q9XEE6
Descriptions
- Description zinc finger (CCCH-type) family protein
- Computational description CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 1196 Blast hits to 1143 proteins in 183 species: Archae - 4; Bacteria - 47; Metazoa - 401; Fungi - 61; Plants - 441; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | TAS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 2 |
| GO:0050832 | IMP | Gene Ontology | defense response to fungus | 3 |
| GO:0071456 | HEP | Gene Ontology | cellular response to hypoxia | 4 |
| GO:0010200 | IEP | GOA Database | response to chitin | |
| GO:0010200 | IBA | Gene Ontology | response to chitin | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 6 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.2 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF) |