Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p16470 Brassica napus HOM05D002498 ORTHO05D039468 1.7e-123 446.0 232 100.0
BcaC02g11374 Brassica carinata HOM05D003322 ORTHO05D039468 1.1e-80 303.9 175 92.6
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 5.3e-48 195.3 264 53.0
BcaNung06974 Brassica carinata HOM05D002498 ORTHO05D002553 5.1e-43 178.7 250 52.0
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 6.2e-41 171.8 258 50.0
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 6.2e-41 171.8 258 50.0
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 6.4e-38 161.8 259 46.3
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 2.1e-36 156.8 267 44.6
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 3.3e-34 149.4 272 43.0
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 5.6e-34 148.7 267 46.4
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 9.6e-34 147.9 271 43.2
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 3.7e-33 146.0 278 40.6
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 6.2e-33 145.2 228 48.2
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 6.2e-33 145.2 228 48.2
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 4.5e-31 139.0 253 44.3
A09p60370 Brassica napus HOM05D002498 ORTHO05D002553 1.2e-28 131.0 246 42.3
BraA09t41409Z Brassica rapa HOM05D002498 ORTHO05D002553 1.2e-28 131.0 246 42.3
BolC8t51935H Brassica oleracea HOM05D002498 ORTHO05D002553 7.9e-28 128.3 156 49.4
C08p43860 Brassica napus HOM05D002498 ORTHO05D002553 9.0e-24 114.8 156 47.4
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.1e-21 107.8 168 43.5
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.1e-21 107.8 173 43.4
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 1.1e-21 107.8 180 42.2
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.9e-21 107.1 170 42.9
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 5.5e-21 105.5 168 42.9
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 5.5e-21 105.5 173 42.8
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 2.1e-20 103.6 169 45.6
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 2.7e-20 103.2 147 45.6
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 7.9e-20 101.7 170 43.5
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 1.4e-19 100.9 166 45.2
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 3.0e-19 99.8 133 45.9
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.9e-19 99.4 173 41.6
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 6.7e-19 98.6 241 39.4
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 4.3e-18 95.9 285 34.7
Lj5C37T8 Lonicera japonica HOM05D002498 ORTHO05D002553 3.7e-17 92.8 235 38.7
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 1.1e-16 91.3 176 40.3
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.1e-16 91.3 238 37.4
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 2.6e-15 86.7 214 35.5
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 2.6e-15 86.7 250 34.4
Sabra03G0037700 Salix brachista HOM05D002498 ORTHO05D002553 3.4e-15 86.3 159 45.9
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 3.4e-15 86.3 185 41.6
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 5.9e-15 85.5 174 39.1
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 7.7e-15 85.1 253 37.2
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 3.8e-14 82.8 244 38.5
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 5.0e-14 82.4 179 40.8
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 5.0e-14 82.4 179 40.8
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 5.0e-14 82.4 282 34.0
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 6.5e-14 82.0 170 39.4
Sabra01G0141500 Salix brachista HOM05D002498 ORTHO05D002553 8.5e-14 81.6 241 36.1
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 2.5e-13 80.1 168 39.9
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 2.5e-13 80.1 174 42.0
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 4.2e-13 79.3 178 38.2
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 7.2e-13 78.6 164 40.9
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.6e-12 77.4 271 33.2
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 4.7e-12 75.9 128 42.2
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 6.1e-12 75.5 163 37.4
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 6.1e-12 75.5 239 34.3
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 1.0e-11 74.7 265 34.7
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.4e-11 74.3 243 34.2
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 1.4e-11 74.3 108 46.3
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 3.9e-11 72.8 177 39.0
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 3.9e-11 72.8 104 44.2
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 3.9e-11 72.8 104 44.2
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 6.7e-11 72.0 142 40.1
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 2.0e-10 70.5 182 34.6
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 2.6e-10 70.1 161 39.8
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 2.6e-10 70.1 155 40.0
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 5.7e-10 68.9 98 44.9
Cpa.g.sc25.112 Carica papaya HOM05D002498 ORTHO05D002553 7.4e-10 68.6 87 49.4
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 7.4e-10 68.6 101 42.6
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 9.7e-10 68.2 294 29.9
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 9.7e-10 68.2 153 37.3
SalBow6G7152 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.8e-09 66.6 105 41.9
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 8.2e-09 65.1 194 30.9
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 8.2e-09 65.1 179 35.2
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 1.4e-08 64.3 167 35.3
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.8e-08 63.9 262 31.7
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.8e-08 63.9 247 32.8
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 5.3e-08 62.4 202 32.2
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 7.0e-08 62.0 270 30.4
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 1.2e-07 61.2 292 30.5
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 1.2e-07 61.2 140 42.1
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 1.2e-07 61.2 105 40.0
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 5.9e-07 58.9 108 41.7
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 2.2e-06 57.0 172 37.2
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 3.8e-06 56.2 167 32.3
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 3.8e-06 56.2 107 39.3
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 5.0e-06 55.8 280 30.4
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 6.5e-06 55.5 128 38.3
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 6.5e-06 55.5 243 29.6
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 8.5e-06 55.1 133 33.8
SalBow6G1630 Salvia bowleyana HOM05D002498 ORTHO05D002553 8.5e-06 55.1 98 39.8


User provided reference genes

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