Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p13000 Brassica napus HOM05D000821 ORTHO05D097366 2.0e-83 312.4 155 100.0
C05p47820 Brassica napus HOM05D000821 ORTHO05D103207 9.5e-70 266.9 154 87.0
C04p13050 Brassica napus HOM05D000821 ORTHO05D096571 1.2e-69 266.5 129 100.0
C09p61240 Brassica napus HOM05D009375 ORTHO05D014094 5.0e-18 95.1 71 67.6
BolC9t58966H Brassica oleracea HOM05D009375 ORTHO05D014094 5.0e-18 95.1 71 67.6
BolC1t02810H Brassica oleracea HOM05D009375 ORTHO05D014094 2.1e-16 89.7 71 64.8
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 1.6e-13 80.1 59 76.3
BraA02t07644Z Brassica rapa HOM05D007738 ORTHO05D014094 6.3e-13 78.2 50 76.0
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.2e-11 73.9 86 58.1
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 1.0e-10 70.9 60 70.0
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 1.3e-10 70.5 86 57.0
BcaC07g41318 Brassica carinata HOM05D009375 ORTHO05D014094 4.2e-09 65.5 69 50.7
AL3G11790 Arabidopsis lyrata HOM05D000821 ORTHO05D000931 7.2e-09 64.7 46 67.4
BNapus_Darmor_BZH_scaffold_99p00010 Brassica napus HOM05D000821 ORTHO05D000931 7.2e-09 64.7 46 67.4
Thhalv10022357m.g Eutrema salsugineum HOM05D000821 ORTHO05D000931 7.2e-09 64.7 46 67.4
BcaB01g01852 Brassica carinata HOM05D009375 ORTHO05D014094 9.4e-09 64.3 46 71.7
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 9.4e-09 64.3 63 65.1
AT3G02470 Arabidopsis thaliana HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
BcaC01g04553 Brassica carinata HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
BcaC09g47703 Brassica carinata HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
A03p32940 Brassica napus HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
BNapus_Darmor_BZH_scaffold_208p00020 Brassica napus HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
BolC1t05902H Brassica oleracea HOM05D000821 ORTHO05D000931 1.2e-08 63.9 46 65.2
BcaB04g21409 Brassica carinata HOM05D000821 ORTHO05D000931 1.6e-08 63.5 46 65.2
A05p45220 Brassica napus HOM05D000821 ORTHO05D000931 1.6e-08 63.5 46 65.2
BcaC01g00995 Brassica carinata HOM05D009375 ORTHO05D014094 2.1e-08 63.2 48 66.7
BcaC07g41316 Brassica carinata HOM05D009375 ORTHO05D014094 2.1e-08 63.2 48 66.7
BcaC09g50118 Brassica carinata HOM05D009375 ORTHO05D014094 2.7e-08 62.8 103 38.8
A09p21500 Brassica napus HOM05D001317 ORTHO05D001164 2.7e-08 62.8 48 66.7
BraA09t37749Z Brassica rapa HOM05D001317 ORTHO05D001164 2.7e-08 62.8 48 66.7
BraA05t23139Z Brassica rapa HOM05D000821 ORTHO05D000931 3.6e-08 62.4 46 65.2
Ah.02g127380 Amaranthus hybridus HOM05D000821 ORTHO05D000931 4.6e-08 62.0 47 59.6
BcaC01g04445 Brassica carinata HOM05D000821 ORTHO05D000931 4.6e-08 62.0 46 63.0
C03p40060 Brassica napus HOM05D000821 ORTHO05D000931 4.6e-08 62.0 46 63.0
BolC3t16272H Brassica oleracea HOM05D000821 ORTHO05D000931 4.6e-08 62.0 46 63.0
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 4.6e-08 62.0 63 63.5
BraA03t12462Z Brassica rapa HOM05D000821 ORTHO05D000931 4.6e-08 62.0 46 63.0
CARHR076450 Cardamine hirsuta HOM05D000821 ORTHO05D000931 4.6e-08 62.0 46 63.0
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 6.1e-08 61.6 47 76.6
BraA05t20401Z Brassica rapa HOM05D000821 ORTHO05D014094 6.1e-08 61.6 42 69.0
Carub.0003s0157 Capsella rubella HOM05D000821 ORTHO05D000931 6.1e-08 61.6 46 63.0
Sp3g01490 Schrenkiella parvula HOM05D000821 ORTHO05D000931 6.1e-08 61.6 46 63.0
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 6.1e-08 61.6 63 63.5
BraSC141t45632Z Brassica rapa HOM05D000821 ORTHO05D000931 7.9e-08 61.2 46 65.2
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 7.9e-08 61.2 63 61.9
BcaB01g04839 Brassica carinata HOM05D009375 ORTHO05D014094 1.0e-07 60.8 48 66.7
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 1.0e-07 60.8 63 63.5
QL02p054330 Quercus lobata HOM05D000821 ORTHO05D000931 1.4e-07 60.5 49 55.1
HanXRQChr08g0214651 Helianthus annuus HOM05D000821 ORTHO05D000931 2.3e-07 59.7 42 61.9
Dinv34877 Davidia involucrata HOM05D000821 ORTHO05D000931 3.0e-07 59.3 49 53.1
Duzib138G1693 Durio zibethinus HOM05D000821 ORTHO05D000931 3.0e-07 59.3 47 57.4
Hma1.2p1_0189F.1_g082770 Hydrangea macrophylla HOM05D000821 ORTHO05D000931 3.0e-07 59.3 47 59.6
Rhsim10G0062600 Rhododendron simsii HOM05D000821 ORTHO05D000931 3.0e-07 59.3 47 53.2
BcaC05g30357 Brassica carinata HOM05D000821 ORTHO05D000931 3.9e-07 58.9 46 60.9
BcaC05g30360 Brassica carinata HOM05D000821 ORTHO05D000931 3.9e-07 58.9 46 60.9
C09p75720 Brassica napus HOM05D000821 ORTHO05D000931 3.9e-07 58.9 46 60.9
BolC5t35080H Brassica oleracea HOM05D000821 ORTHO05D000931 3.9e-07 58.9 46 60.9
PSO063G7241 Papaver somniferum HOM05D000821 ORTHO05D000931 3.9e-07 58.9 48 56.2
PSO782G4157 Papaver somniferum HOM05D000821 ORTHO05D000931 3.9e-07 58.9 48 56.2
AUR62007784 Chenopodium quinoa HOM05D000821 ORTHO05D000931 5.1e-07 58.5 47 55.3
HanXRQChr12g0365201 Helianthus annuus HOM05D000821 ORTHO05D000931 5.1e-07 58.5 42 64.3
A03p07490 Brassica napus HOM05D000821 ORTHO05D000931 6.7e-07 58.2 46 58.7
A10p23110 Brassica napus HOM05D000821 ORTHO05D000931 6.7e-07 58.2 46 58.7
BraA10t44379Z Brassica rapa HOM05D000821 ORTHO05D000931 6.7e-07 58.2 46 58.7
CSS0034452 Camellia sinensis var. sinensis HOM05D000821 ORTHO05D000931 6.7e-07 58.2 49 53.1
Lalb_Chr17g0341701 Lupinus albus HOM05D000821 ORTHO05D000931 6.7e-07 58.2 47 53.2
Peaxi162Scf00188g00043 Petunia axillaris HOM05D000821 ORTHO05D000931 6.7e-07 58.2 50 50.0
Rhsim08G0081000 Rhododendron simsii HOM05D000821 ORTHO05D000931 6.7e-07 58.2 49 55.1
Solyc01g010050.3 Solanum lycopersicum HOM05D000821 ORTHO05D000931 6.7e-07 58.2 49 55.1
Sopen01g005600 Solanum pennellii HOM05D000821 ORTHO05D000931 6.7e-07 58.2 49 55.1
TWI32G0656 Tripterygium wilfordii HOM05D000821 ORTHO05D000931 6.7e-07 58.2 49 55.1
BcaB04g21100 Brassica carinata HOM05D009375 ORTHO05D014094 8.8e-07 57.8 38 73.7
BraA03t10078Z Brassica rapa HOM05D000821 ORTHO05D000931 8.8e-07 57.8 49 57.1
Eucgr.J01447 Eucalyptus grandis HOM05D000821 ORTHO05D000931 8.8e-07 57.8 47 55.3
Lj4C128T16 Lonicera japonica HOM05D000821 ORTHO05D000931 8.8e-07 57.8 52 51.9
THA.LOC104802999 Tarenaya hassleriana HOM05D000821 ORTHO05D000931 8.8e-07 57.8 49 51.0
Atru.chr8.733 Acer truncatum HOM05D000821 ORTHO05D000931 1.1e-06 57.4 47 53.2
EL10Ac6g14587 Beta vulgaris HOM05D000821 ORTHO05D000931 1.1e-06 57.4 47 53.2
CAN.G497.24 Capsicum annuum HOM05D000821 ORTHO05D000931 1.1e-06 57.4 47 55.3
Lsat_1_v5_gn_2_86141 Lactuca sativa HOM05D000821 ORTHO05D000931 1.1e-06 57.4 49 49.0
QL06p007163 Quercus lobata HOM05D000821 ORTHO05D000931 1.1e-06 57.4 47 51.1
PGSC0003DMG400016009 Solanum tuberosum HOM05D000821 ORTHO05D000931 1.1e-06 57.4 49 55.1
VMungo1215G3225 Vigna mungo HOM05D000821 ORTHO05D000931 1.1e-06 57.4 47 55.3
AL6G26830 Arabidopsis lyrata HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
arahy.Tifrunner.gnm1.ann1.0034KJ Arachis hypogaea HOM05D000821 ORTHO05D000931 1.5e-06 57.0 48 50.0
BcaB08g36873 Brassica carinata HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
C09p61110 Brassica napus HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
BolC9t58954H Brassica oleracea HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
Carub.0006s1415 Capsella rubella HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
Thhalv10015260m.g Eutrema salsugineum HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
Nitab4.5_0000259g0260 Nicotiana tabacum HOM05D000821 ORTHO05D000931 1.5e-06 57.0 47 51.1
Nitab4.5_0013699g0010 Nicotiana tabacum HOM05D000821 ORTHO05D000931 1.5e-06 57.0 47 51.1
Thecc.04G145800 Theobroma cacao HOM05D000821 ORTHO05D000931 1.5e-06 57.0 47 53.2
TWI34G1857 Tripterygium wilfordii HOM05D000821 ORTHO05D000931 1.5e-06 57.0 46 56.5
Aa31LG5G12970 Aethionema arabicum HOM05D000821 ORTHO05D000931 2.0e-06 56.6 46 54.3
MSTRG.3387 Avicennia marina HOM05D000821 ORTHO05D000931 2.0e-06 56.6 46 56.5
CAN.G184.33 Capsicum annuum HOM05D000821 ORTHO05D000931 2.0e-06 56.6 124 33.1
Peaxi162Scf00026g00023 Petunia axillaris HOM05D000821 ORTHO05D000931 2.0e-06 56.6 47 51.1
RcHm_v2.0_Chr4g0436761 Rosa chinensis HOM05D000821 ORTHO05D000931 2.0e-06 56.6 47 51.1
SalBow1G0065 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.0e-06 56.6 46 56.5
SalBow1G6886 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.0e-06 56.6 46 56.5
Hund25122 Selenicereus undatus HOM05D000821 ORTHO05D000931 2.0e-06 56.6 42 61.9
MSTRG.799 Avicennia marina HOM05D000821 ORTHO05D000931 2.5e-06 56.2 47 55.3
CANSAT64G2987 Cannabis sativa HOM05D000821 ORTHO05D000931 2.5e-06 56.2 49 53.1
Ciclev10013866m.g Citrus clementina HOM05D000821 ORTHO05D000931 2.5e-06 56.2 49 53.1
Lsat_1_v5_gn_3_95801 Lactuca sativa HOM05D000821 ORTHO05D000931 2.5e-06 56.2 54 48.1
Lj6C770T4 Lonicera japonica HOM05D000821 ORTHO05D000931 2.5e-06 56.2 47 55.3
Lalb_Chr21g0318061 Lupinus albus HOM05D000821 ORTHO05D000931 2.5e-06 56.2 42 64.3
Nitab4.5_0001965g0070 Nicotiana tabacum HOM05D000821 ORTHO05D000931 2.5e-06 56.2 47 51.1
Phvul.003G044200 Phaseolus vulgaris HOM05D000821 ORTHO05D000931 2.5e-06 56.2 45 60.0
SalBow8G0588 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.5e-06 56.2 47 51.1
SalBow8G4660 Salvia bowleyana HOM05D000821 ORTHO05D000931 2.5e-06 56.2 47 51.1
AT5G15950 Arabidopsis thaliana HOM05D000821 ORTHO05D000931 3.3e-06 55.8 46 56.5
CSS0010476 Camellia sinensis var. sinensis HOM05D000821 ORTHO05D000931 3.3e-06 55.8 49 53.1
COL.COLO4_37043 Corchorus olitorius HOM05D000821 ORTHO05D000931 3.3e-06 55.8 47 53.2
Nitab4.5_0001196g0090 Nicotiana tabacum HOM05D000821 ORTHO05D000931 3.3e-06 55.8 47 51.1
PGR102G1751 Punica granatum HOM05D000821 ORTHO05D000931 3.3e-06 55.8 47 53.2
Aa31LG11G13640 Aethionema arabicum HOM05D000821 ORTHO05D000931 4.3e-06 55.5 46 54.3
BcaC04g18921 Brassica carinata HOM05D000821 ORTHO05D000931 4.3e-06 55.5 42 59.5
CARHR197350 Cardamine hirsuta HOM05D000821 ORTHO05D000931 4.3e-06 55.5 52 48.1
Migut.H00558 Erythranthe guttata HOM05D000821 ORTHO05D000931 4.3e-06 55.5 46 58.7
FvH4_4g28650 Fragaria vesca HOM05D000821 ORTHO05D000931 4.3e-06 55.5 47 48.9
FAN12G2142 Fragaria x ananassa HOM05D000821 ORTHO05D000931 4.3e-06 55.5 47 48.9
Gohir.A08G035800 Gossypium hirsutum HOM05D000821 ORTHO05D000931 4.3e-06 55.5 42 59.5
Potri.004G106800 Populus trichocarpa HOM05D000821 ORTHO05D000931 4.3e-06 55.5 46 56.5
PGR042G1194 Punica granatum HOM05D000821 ORTHO05D000931 4.3e-06 55.5 47 53.2
vmacro18091 Vaccinium macrocarpon HOM05D000821 ORTHO05D000931 4.3e-06 55.5 46 56.5
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 5.7e-06 55.1 63 58.7
BcaB01g05011 Brassica carinata HOM05D000821 ORTHO05D000931 5.7e-06 55.1 46 56.5
BcaB01g05012 Brassica carinata HOM05D000821 ORTHO05D000931 5.7e-06 55.1 46 56.5
BcaC04g18932 Brassica carinata HOM05D009375 ORTHO05D014094 5.7e-06 55.1 41 63.4
Cfa007993 Carpinus fangiana HOM05D000821 ORTHO05D000931 5.7e-06 55.1 42 61.9
CiPaw.03G007400 Carya illinoinensis HOM05D000821 ORTHO05D000931 5.7e-06 55.1 47 51.1
Ciclev10033607m.g Citrus clementina HOM05D000821 ORTHO05D000931 5.7e-06 55.1 47 53.2
MELO3C023787.2 Cucumis melo HOM05D000821 ORTHO05D000931 5.7e-06 55.1 49 53.1
CsaV3_3G020560 Cucumis sativus L. HOM05D000821 ORTHO05D000931 5.7e-06 55.1 49 53.1
DCAR_026286 Daucus carota HOM05D000821 ORTHO05D000931 5.7e-06 55.1 47 48.9
Nitab4.5_0001982g0050 Nicotiana tabacum HOM05D000821 ORTHO05D000931 5.7e-06 55.1 42 59.5
SalBow1G0825 Salvia bowleyana HOM05D000821 ORTHO05D000931 5.7e-06 55.1 42 59.5
Sp6g28160 Schrenkiella parvula HOM05D000821 ORTHO05D000931 5.7e-06 55.1 46 54.3
Sed0009118 Sechium edule HOM05D000821 ORTHO05D000931 5.7e-06 55.1 49 51.0
Solyc02g089610.2 Solanum lycopersicum HOM05D000821 ORTHO05D000931 5.7e-06 55.1 42 59.5
Sopen02g034330 Solanum pennellii HOM05D000821 ORTHO05D000931 5.7e-06 55.1 42 59.5
TAR622G0670 Trochodendron aralioides HOM05D000821 ORTHO05D000931 5.7e-06 55.1 47 53.2
Aa31LG7G8820 Aethionema arabicum HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 59.5
ECA233G3170 Erigeron canadensis HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 54.8
ECA233G4766 Erigeron canadensis HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 57.1
Glyma.18G278800 Glycine max HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 59.5
HanXRQChr14g0448031 Helianthus annuus HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 57.1
Lsat_1_v5_gn_8_37801 Lactuca sativa HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 59.5
Manes.02G063500 Manihot esculenta HOM05D000821 ORTHO05D000931 7.4e-06 54.7 46 54.3
PGSC0003DMG400010051 Solanum tuberosum HOM05D000821 ORTHO05D000931 7.4e-06 54.7 42 59.5
SGA_v2.0_scaffold52G19030 Striga asiatica HOM05D000821 ORTHO05D000931 7.4e-06 54.7 50 56.0
TAR374G0986 Trochodendron aralioides HOM05D000821 ORTHO05D000931 7.4e-06 54.7 47 53.2
unitig_8.g3213 Utricularia gibba HOM05D000821 ORTHO05D000931 7.4e-06 54.7 47 48.9
C03p08690 Brassica napus HOM05D000821 ORTHO05D000931 9.7e-06 54.3 46 56.5
BolC3t13369H Brassica oleracea HOM05D000821 ORTHO05D000931 9.7e-06 54.3 46 56.5
CiPaw.04G005300 Carya illinoinensis HOM05D000821 ORTHO05D000931 9.7e-06 54.3 47 51.1
Cc11_g11130 Coffea canephora HOM05D000821 ORTHO05D000931 9.7e-06 54.3 50 44.0
Migut.L01128 Erythranthe guttata HOM05D000821 ORTHO05D000931 9.7e-06 54.3 47 51.1
Hma1.2p1_1424F.1_g282790 Hydrangea macrophylla HOM05D000821 ORTHO05D000931 9.7e-06 54.3 42 59.5
Hma1.2p1_1793F.1_g302650 Hydrangea macrophylla HOM05D000821 ORTHO05D000931 9.7e-06 54.3 42 59.5
Lalb_Chr04g0255271 Lupinus albus HOM05D000821 ORTHO05D000931 9.7e-06 54.3 49 49.0
Lalb_Chr10g0099461 Lupinus albus HOM05D000821 ORTHO05D000931 9.7e-06 54.3 42 57.1
Nitab4.5_0006224g0030 Nicotiana tabacum HOM05D000821 ORTHO05D000931 9.7e-06 54.3 42 59.5
Hund05793 Selenicereus undatus HOM05D000821 ORTHO05D000931 9.7e-06 54.3 47 51.1
unitig_22.g6538 Utricularia gibba HOM05D000821 ORTHO05D000931 9.7e-06 54.3 47 48.9


User provided reference genes

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