Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1676.0 901 100.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1587.0 907 92.0
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1562.4 904 91.5
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1389.4 918 81.4
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1382.1 910 80.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1378.6 913 80.1
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1378.2 923 79.1
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1378.2 913 80.0
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 0.0e+00 1377.5 923 79.1
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 0.0e+00 1308.9 909 76.6
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 0.0e+00 1269.6 915 75.7
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 0.0e+00 1260.4 917 74.6
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 0.0e+00 1255.7 921 74.3
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 0.0e+00 1135.9 847 70.1
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.1e-290 1003.4 908 62.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.2e-252 877.1 910 56.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.7e-248 863.2 785 66.0
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.8e-220 768.5 443 86.0
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.9e-212 741.9 576 68.6
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.6e-193 679.5 868 47.5
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 6.1e-193 678.7 866 45.2
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.4e-191 672.5 864 45.3
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 4.8e-190 669.1 865 44.4
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.0e-184 649.8 877 43.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 4.8e-182 642.5 871 42.1
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 1.8e-181 640.6 879 42.8
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.4e-181 640.2 865 42.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.9e-180 635.6 862 42.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 5.9e-180 635.6 916 41.3
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 7.7e-180 635.2 872 41.9
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.3e-179 634.4 870 44.0
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 5.0e-179 632.5 869 43.0
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 1.1e-178 631.3 870 43.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.5e-178 630.9 874 43.5
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.9e-178 630.6 867 42.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.1e-177 627.1 872 42.1
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.7e-177 626.7 870 42.4
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.6e-177 626.3 927 41.5
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 8.0e-177 625.2 872 42.4
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.8e-176 622.1 867 41.9
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 3.7e-174 616.3 874 41.3
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 3.1e-173 613.2 874 41.1
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 3.1e-173 613.2 865 42.2
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 9.1e-173 611.7 874 41.3
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.7e-171 607.4 867 41.3
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.3e-171 607.1 869 41.7
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.9e-170 604.0 556 63.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.5e-170 603.6 864 44.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 7.2e-170 602.1 875 40.6
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 8.0e-169 598.6 887 39.8
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 1.2e-167 594.7 772 44.4
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.6e-167 593.6 863 41.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 1.7e-166 590.9 866 41.5
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.2e-166 590.5 863 40.8
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 3.7e-166 589.7 866 41.9
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.3e-166 588.6 866 41.3
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.3e-166 588.6 874 43.0
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 7.0e-165 585.5 863 41.0
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.2e-164 584.7 878 41.8
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.0e-163 581.6 905 42.8
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.3e-163 581.3 820 43.8
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-163 580.9 865 40.9
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.9e-162 577.4 872 40.1
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 4.3e-162 576.2 782 43.6
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 5.6e-162 575.9 866 40.5
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 5.6e-162 575.9 855 40.9
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 6.1e-161 572.4 866 39.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 8.0e-161 572.0 869 41.5
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 5.2e-160 569.3 875 41.1
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 5.2e-160 569.3 866 40.1
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-159 568.2 865 40.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.2e-159 568.2 875 40.6
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 2.0e-159 567.4 898 39.4
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 3.4e-159 566.6 877 40.4
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.7e-158 564.3 865 40.1
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.1e-157 561.6 865 41.7
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 5.4e-157 559.3 836 39.7
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 2.0e-156 557.4 944 41.3
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.0e-156 557.4 961 38.3
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 3.5e-156 556.6 881 39.3
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 3.9e-155 553.1 871 41.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 6.6e-155 552.4 866 39.1
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.9e-154 550.8 857 38.7
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.7e-153 546.2 876 40.1
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-152 544.3 862 41.0
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.4e-151 539.7 853 39.6
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 4.9e-150 536.2 501 69.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.4e-149 533.9 866 38.3
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 3.5e-148 530.0 855 39.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.3e-147 528.1 877 39.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 8.6e-147 525.4 862 37.6
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.5e-146 523.9 871 42.0
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.3e-146 523.5 863 40.8
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 7.3e-146 522.3 948 37.4
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 9.5e-146 521.9 838 38.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 2.1e-145 520.8 877 38.2
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.6e-145 520.0 876 38.6
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.6e-143 512.3 860 36.4
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.4e-141 508.1 909 35.1
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 4.3e-138 496.5 517 51.8
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.1e-137 492.3 872 37.5
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 1.4e-136 491.5 876 36.2
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 4.0e-136 490.0 943 35.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 4.9e-134 483.0 864 38.2
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 3.3e-130 470.3 724 39.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.3e-130 469.2 867 37.6
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 8.4e-126 455.7 674 40.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.9e-124 449.1 877 35.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 9.3e-117 425.6 602 43.4
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.6e-116 424.9 562 44.3
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.6e-116 424.9 828 34.1
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 4.9e-110 403.3 413 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 1.9e-109 401.4 878 36.3
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.6e-108 398.3 467 46.0
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.0e-107 395.6 397 53.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.1e-106 392.1 1344 26.7
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 4.3e-106 390.2 283 64.0
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.7e-105 387.1 889 35.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 6.5e-102 376.3 859 35.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 2.2e-94 351.3 285 60.7
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 3.2e-93 347.4 1355 24.5
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 1.7e-89 335.1 271 61.3
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.1e-88 332.4 363 46.6
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.7e-86 325.1 868 32.9
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 5.5e-85 320.1 241 73.9
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.2e-66 259.2 476 34.2
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 9.1e-64 249.6 195 59.0
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.0e-62 246.1 651 29.2
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.7e-62 245.4 139 86.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.5e-61 240.4 321 40.8
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.5e-58 232.3 178 63.5
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 5.7e-58 230.3 238 67.2
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.3e-54 218.4 796 26.8
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.1e-52 211.8 407 34.9
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 6.1e-52 210.3 1109 22.5
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 1.0e-51 209.5 351 37.0
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-50 205.7 403 33.5
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 3.2e-48 198.0 401 35.4
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 3.5e-47 194.5 100 93.0
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 5.2e-43 180.6 403 32.8
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 7.5e-42 176.8 362 33.4
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-37 162.9 448 28.3
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.4e-34 151.0 452 30.1
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.2e-33 148.7 81 86.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.1e-31 142.1 120 56.7
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 3.1e-27 128.3 356 28.9
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 8.9e-27 126.7 88 63.6
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.7e-25 122.5 84 63.1
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.1e-24 119.8 153 44.4
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.4e-24 119.4 89 66.3
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 9.2e-24 116.7 80 70.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.3e-21 107.8 110 45.5
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 4.3e-21 107.8 53 90.6
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 5.2e-19 100.9 55 85.5
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-18 99.4 267 28.5
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 9.9e-18 96.7 103 46.6
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 6.0e-15 87.4 168 36.3
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 1.0e-14 86.7 91 46.2
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-14 85.9 170 31.2
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 6.6e-14 84.0 322 34.5
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.5e-13 82.8 220 28.2
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.6e-12 79.3 115 33.9
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-11 76.6 161 31.1
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 9.0e-11 73.6 175 30.9
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.7e-09 69.3 106 45.3
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.9e-08 65.9 190 27.4
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 2.4e-08 65.5 302 22.8
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 3.2e-08 65.1 159 27.7
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 5.4e-08 64.3 84 41.7
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-07 63.2 259 25.5
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.1e-07 62.4 81 49.4


User provided reference genes

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