Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.3e-229 798.5 397 100.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-143 513.5 441 64.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.2e-139 499.6 439 62.9
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 2.5e-138 496.1 439 62.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.7e-137 491.9 439 61.5
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.8e-136 490.0 439 61.3
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.3e-133 478.4 406 64.0
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 2.0e-132 476.5 439 59.9
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 2.6e-132 476.1 413 63.0
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 7.7e-132 474.6 442 61.3
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.6e-129 465.7 429 61.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 3.3e-127 459.1 428 60.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-127 459.1 428 60.7
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 4.4e-127 458.8 438 57.8
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 4.4e-127 458.8 429 60.6
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.2e-119 434.1 431 58.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 5.7e-119 431.8 439 55.4
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.8e-97 359.8 449 46.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 3.4e-95 352.8 440 48.6
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 5.8e-95 352.1 431 47.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 6.4e-94 348.6 432 48.4
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 6.4e-94 348.6 433 46.7
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.3e-94 348.2 439 45.8
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 1.9e-93 347.1 422 46.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.2e-93 346.3 441 47.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.2e-93 346.3 386 51.6
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.2e-92 344.4 433 46.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 2.0e-92 343.6 441 45.6
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.7e-92 343.2 435 46.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 4.6e-92 342.4 445 45.4
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 7.8e-92 341.7 434 46.5
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 7.8e-92 341.7 450 47.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.0e-91 341.3 429 47.3
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 2.3e-91 340.1 433 46.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.3e-91 340.1 433 46.9
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 8.6e-91 338.2 445 46.7
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 1.5e-90 337.4 433 45.3
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.5e-90 337.4 447 47.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.3e-90 336.3 433 46.2
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 5.6e-90 335.5 464 45.0
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 5.6e-90 335.5 432 46.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 5.6e-90 335.5 421 47.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 7.3e-90 335.1 445 46.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.3e-90 335.1 429 46.6
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 9.5e-90 334.7 428 46.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 9.5e-90 334.7 412 46.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.2e-89 334.3 440 45.2
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.6e-89 334.0 451 44.8
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.1e-89 333.6 448 46.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.8e-89 333.2 435 46.2
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.6e-89 332.8 386 51.0
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.7e-89 332.4 433 46.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 4.7e-89 332.4 447 45.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.4e-88 330.9 433 44.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.4e-88 330.9 447 45.9
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.2e-87 327.8 431 44.8
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.2e-87 327.8 431 44.8
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.2e-87 327.8 442 46.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 2.0e-87 327.0 433 46.0
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 2.6e-87 326.6 416 46.6
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.4e-87 326.2 423 46.1
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 3.4e-87 326.2 433 45.3
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 4.4e-87 325.9 401 46.9
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 9.8e-87 324.7 427 45.0
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 9.8e-87 324.7 412 45.9
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.3e-86 324.3 436 46.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 1.3e-86 324.3 435 46.0
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.2e-86 323.6 407 47.7
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.9e-86 323.2 436 45.9
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 4.9e-86 322.4 457 44.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 9.2e-85 318.2 428 43.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-84 317.8 444 43.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.6e-84 317.4 449 43.4
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.6e-84 317.4 419 47.5
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 6.0e-84 315.5 448 43.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.3e-83 314.3 433 44.8
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.3e-83 314.3 423 44.7
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.9e-83 312.8 433 44.6
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 5.1e-83 312.4 412 47.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.6e-83 312.0 433 44.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 8.6e-83 311.6 434 44.0
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.5e-82 310.8 423 45.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 3.3e-82 309.7 428 43.9
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.6e-81 307.4 438 44.1
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.7e-81 305.8 417 44.6
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 6.2e-81 305.4 415 45.5
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-80 304.3 408 44.4
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 2.3e-80 303.5 436 43.3
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.0e-80 302.8 438 43.6
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.8e-80 302.0 430 43.5
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-78 297.4 446 42.4
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.7e-78 296.2 391 46.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 4.9e-78 295.8 421 44.2
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 8.3e-78 295.0 424 42.0
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.1e-77 294.7 415 42.4
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.1e-77 294.7 446 42.4
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.4e-77 294.3 446 41.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.4e-77 293.5 418 40.2
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 7.1e-77 292.0 415 44.8
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-74 284.6 186 74.7
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 9.6e-74 281.6 416 40.1
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.8e-72 277.3 402 43.5
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 9.9e-71 271.6 414 40.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 3.8e-70 269.6 416 40.1
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.0e-67 261.5 404 40.3
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 9.6e-66 255.0 372 43.0
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.8e-65 253.4 272 52.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 1.6e-60 237.7 269 49.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.6e-60 237.7 418 37.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 3.5e-60 236.5 406 37.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 6.0e-60 235.7 272 50.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 8.7e-59 231.9 415 37.8
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 4.3e-58 229.6 422 35.8
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 9.6e-58 228.4 276 49.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 4.9e-54 216.1 393 38.4
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 6.4e-54 215.7 190 66.3
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 1.6e-52 211.1 412 35.9
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.5e-52 209.9 415 34.9
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.0e-47 194.1 281 42.0
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 7.6e-47 192.2 187 50.8
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-42 178.3 176 51.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.1e-42 178.3 357 34.5
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.4e-39 166.8 238 43.7
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.7e-38 164.5 426 30.5
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.8e-38 163.3 209 47.8
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.3e-35 154.1 214 44.9
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.0e-35 153.7 187 44.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 5.1e-35 152.9 200 47.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.2e-31 141.7 189 41.3
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.3e-30 138.3 113 63.7
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.2e-29 133.7 178 48.3
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 3.2e-29 133.7 174 42.0
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 4.3e-26 123.2 104 58.7
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 3.4e-23 113.6 187 39.6
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 5.9e-23 112.8 159 43.4
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.0e-22 112.1 88 65.9
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-22 111.7 324 29.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.0e-18 97.8 70 64.3
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 2.8e-09 67.4 100 37.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.1e-08 63.9 40 82.5


User provided reference genes

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