Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 4.2e-32 140.6 64 100.0
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 4.2e-32 140.6 64 100.0
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 3.5e-18 94.4 42 100.0
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 3.5e-18 94.4 42 100.0
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 3.5e-18 94.4 42 100.0
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 3.5e-18 94.4 42 100.0
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 5.9e-18 93.6 42 97.6
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 7.8e-18 93.2 64 71.9
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 1.3e-17 92.4 42 95.2
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 1.3e-17 92.4 42 95.2
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 1.3e-17 92.4 42 95.2
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.3e-17 92.4 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 1.7e-17 92.0 42 95.2
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 1.7e-17 92.0 42 95.2
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 2.3e-17 91.7 42 95.2
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 3.0e-17 91.3 42 95.2
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 3.9e-17 90.9 42 92.9
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 5.0e-17 90.5 42 92.9
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 5.0e-17 90.5 42 92.9
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 5.0e-17 90.5 42 92.9
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 5.0e-17 90.5 42 92.9
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 5.0e-17 90.5 42 92.9
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 6.6e-17 90.1 42 92.9
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 6.6e-17 90.1 42 92.9
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 6.6e-17 90.1 42 92.9
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 90.5
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 90.5
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 90.5
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 92.9
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 92.9
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 8.6e-17 89.7 42 92.9
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 90.5
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 1.1e-16 89.4 42 92.9
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 90.5
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 90.5
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 90.5
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 92.9
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 92.9
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 92.9
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 1.5e-16 89.0 42 92.9
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.9e-16 88.6 42 90.5
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.9e-16 88.6 42 90.5
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.9e-16 88.6 42 90.5
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-16 88.6 41 95.1
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.9e-16 88.6 41 95.1
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.5e-16 88.2 42 90.5
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 3.3e-16 87.8 42 90.5
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 3.3e-16 87.8 42 90.5
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 4.3e-16 87.4 47 87.2
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.3e-16 87.4 42 90.5
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 4.3e-16 87.4 42 90.5
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 5.6e-16 87.0 42 88.1
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 5.6e-16 87.0 42 88.1
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 5.6e-16 87.0 42 90.5
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 5.6e-16 87.0 42 90.5
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 5.6e-16 87.0 42 90.5
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 7.3e-16 86.7 42 90.5
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 7.3e-16 86.7 42 90.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.3e-16 86.7 42 90.5
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.3e-16 86.7 42 90.5
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 7.3e-16 86.7 42 90.5
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 9.5e-16 86.3 42 90.5
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 9.5e-16 86.3 42 90.5
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 9.5e-16 86.3 42 90.5
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 9.5e-16 86.3 42 90.5
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 9.5e-16 86.3 42 88.1
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.2e-15 85.9 42 88.1
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.6e-15 85.5 42 90.5
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 1.6e-15 85.5 42 90.5
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 2.1e-15 85.1 42 90.5
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 2.8e-15 84.7 42 83.3
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 2.8e-15 84.7 54 75.9
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 2.8e-15 84.7 42 88.1
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 2.8e-15 84.7 42 88.1
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.8e-14 82.0 42 88.1
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 2.3e-14 81.6 58 69.0
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 4.0e-14 80.9 42 83.3
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 2.0e-13 78.6 35 94.3
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.4e-13 77.8 33 100.0
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 5.8e-13 77.0 42 78.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 7.5e-13 76.6 40 85.0
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 1.7e-12 75.5 32 100.0
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 6.4e-12 73.6 32 96.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 1.4e-11 72.4 32 93.8
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 3.2e-11 71.2 32 93.8
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 5.4e-11 70.5 32 90.6
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 7.0e-11 70.1 32 87.5
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.0e-09 66.2 30 96.7
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 3.0e-09 64.7 30 93.3
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 3.9e-09 64.3 63 50.8
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 3.9e-09 64.3 30 90.0
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 5.0e-09 63.9 31 90.3
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 6.6e-09 63.5 32 84.4
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.6e-09 63.5 30 90.0
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 6.6e-09 63.5 30 90.0
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 8.6e-09 63.2 30 86.7
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 1.2e-07 59.3 42 64.3
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 2.1e-07 58.5 41 56.1
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 6.2e-07 57.0 42 59.5
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 8.9e-06 53.1 39 66.7


User provided reference genes

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