Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-83 313.2 153 100.0
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-83 313.2 153 100.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 6.9e-81 303.9 154 98.1
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 4.5e-80 301.2 153 96.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.3e-79 299.7 153 97.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 2.7e-77 292.0 156 94.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.0e-76 290.0 153 93.5
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 7.4e-75 283.9 153 90.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 4.8e-74 281.2 153 91.5
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.8e-73 279.3 153 88.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 9.1e-73 276.9 153 88.9
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 2.2e-66 255.8 154 85.1
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.3e-60 235.7 150 78.0
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-59 232.6 150 78.7
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.6e-59 232.3 150 78.7
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 2.6e-59 232.3 150 78.7
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 9.7e-59 230.3 150 77.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.8e-58 228.8 150 76.0
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.4e-57 226.5 152 75.7
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.8e-57 226.1 150 73.3
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.3e-57 224.6 151 73.5
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.0e-56 222.6 159 71.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 7.7e-56 220.7 128 81.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.7e-55 219.5 151 76.2
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.2e-55 219.2 153 73.2
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.9e-55 218.8 155 71.0
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 2.9e-55 218.8 120 87.5
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.0e-55 218.0 152 71.1
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 6.5e-55 217.6 153 73.2
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.1e-54 216.9 153 71.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.1e-54 216.9 146 75.3
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.1e-54 216.9 151 72.2
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.5e-54 216.5 149 72.5
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.9e-54 216.1 156 73.1
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.5e-54 215.7 104 100.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.2e-54 215.3 148 73.6
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 3.2e-54 215.3 156 71.8
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 3.2e-54 215.3 156 71.8
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 4.2e-54 214.9 140 75.7
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 4.2e-54 214.9 146 75.3
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 5.5e-54 214.5 151 72.2
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 5.5e-54 214.5 156 71.2
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 9.4e-54 213.8 122 87.7
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 9.4e-54 213.8 144 74.3
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 9.4e-54 213.8 156 71.8
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.6e-53 213.0 146 73.3
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 2.1e-53 212.6 125 80.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.6e-53 211.8 146 74.7
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.7e-53 211.5 150 72.7
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 8.0e-53 210.7 151 70.2
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 8.0e-53 210.7 152 72.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.0e-52 210.3 141 75.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.4e-52 209.9 157 71.3
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-52 209.9 136 77.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.2e-52 208.0 152 69.1
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 6.8e-52 207.6 156 70.5
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.0e-51 206.1 155 68.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.6e-51 205.7 140 72.9
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 3.4e-51 205.3 144 71.5
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 4.4e-51 204.9 151 67.5
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 5.7e-51 204.5 152 67.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 7.5e-51 204.1 155 69.7
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 9.8e-51 203.8 129 76.7
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.3e-50 203.4 151 68.2
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.3e-50 203.4 144 71.5
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.7e-50 203.0 152 70.4
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.7e-50 203.0 152 70.4
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.2e-50 202.6 145 71.7
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.8e-50 202.2 150 68.7
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.8e-50 201.4 153 71.2
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 6.3e-50 201.1 144 72.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.3e-50 201.1 119 79.8
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 8.3e-50 200.7 136 74.3
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 8.3e-50 200.7 152 69.7
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.1e-49 200.3 154 68.2
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-49 200.3 153 69.3
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.4e-49 199.9 166 63.3
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.4e-49 199.9 165 63.6
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.8e-49 199.5 146 68.5
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-49 199.1 136 73.5
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 2.4e-49 199.1 153 69.9
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.4e-49 199.1 159 62.9
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 3.1e-49 198.7 122 76.2
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.1e-49 198.7 146 69.2
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 3.1e-49 198.7 160 65.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 3.1e-49 198.7 148 70.3
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 4.1e-49 198.4 154 67.5
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.1e-49 197.2 136 73.5
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.5e-48 195.3 126 74.6
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.5e-48 194.9 145 68.3
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 5.9e-48 194.5 162 66.7
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.9e-48 194.5 140 69.3
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 5.9e-48 194.5 143 68.5
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 7.7e-48 194.1 127 74.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.9e-47 192.2 146 67.1
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 3.8e-47 191.8 125 73.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.8e-47 191.8 123 74.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 5.0e-47 191.4 145 67.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.0e-47 191.4 142 66.2
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 6.5e-47 191.0 150 67.3
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 6.5e-47 191.0 150 65.3
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 6.5e-47 191.0 146 66.4
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 6.5e-47 191.0 140 68.6
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 6.5e-47 191.0 150 64.0
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 8.5e-47 190.7 163 61.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.1e-46 190.3 119 75.6
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.5e-46 189.1 159 63.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.5e-46 189.1 117 82.9
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.5e-46 189.1 147 67.3
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.2e-46 187.6 153 66.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 9.4e-46 187.2 116 76.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-45 186.4 119 72.3
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.6e-45 186.4 156 64.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.1e-45 186.0 156 65.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.6e-45 185.3 118 74.6
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 8.0e-45 184.1 123 72.4
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.8e-44 183.0 114 76.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-44 182.2 153 64.1
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-44 182.2 153 64.1
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.0e-44 181.8 140 67.9
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.2e-43 180.3 211 52.1
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.5e-43 179.9 139 67.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.0e-43 179.5 171 58.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.6e-43 179.1 116 73.3
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.7e-42 176.4 139 66.2
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.1e-41 173.7 139 66.2
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.4e-41 172.6 120 69.2
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.0e-40 169.5 183 55.2
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.5e-40 168.7 102 78.4
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.5e-40 168.7 102 78.4
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 7.7e-40 167.5 129 67.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.3e-39 166.8 125 65.6
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 3.8e-39 165.2 143 62.2
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.1e-38 163.7 146 60.3
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.1e-37 159.5 136 63.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.6e-37 158.7 188 48.9
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.1e-37 157.9 153 54.2
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-36 157.1 136 62.5
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.0e-36 157.1 136 62.5
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 4.0e-36 155.2 130 60.8
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 6.8e-36 154.5 100 74.0
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.2e-34 149.4 141 58.2
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.2e-34 149.4 101 70.3
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 2.9e-34 149.1 135 60.0
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 7.8e-32 141.0 95 70.5
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-31 140.2 77 89.6
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.7e-31 139.8 135 59.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.1e-30 137.1 77 88.3
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 3.3e-30 135.6 77 87.0
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 7.3e-30 134.4 106 64.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.5e-27 126.7 133 50.4
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 4.6e-24 115.2 73 76.7
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.7e-23 113.2 120 46.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.3e-22 109.0 81 71.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 2.1e-21 106.3 58 84.5
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.3e-20 102.8 59 78.0
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 6.8e-20 101.3 100 59.0
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 8.9e-20 100.9 124 54.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.0e-19 99.8 74 67.6
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 3.4e-19 99.0 60 78.3
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 2.2e-18 96.3 64 73.4
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.1e-14 84.0 147 40.1
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 6.8e-12 74.7 150 34.0
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 9.9e-11 70.9 39 82.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.7e-10 70.1 139 32.4


User provided reference genes

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