Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-267 924.9 455 100.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-267 924.9 455 100.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.5e-267 924.9 455 100.0
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.3e-254 880.6 457 95.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.2e-253 879.4 457 95.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.6e-221 771.2 469 86.4
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-207 725.7 477 80.1
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 6.4e-199 697.6 476 76.5
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-198 696.8 475 75.8
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.4e-193 679.1 481 74.0
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.9e-188 661.8 426 79.6
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.6e-181 639.8 391 80.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 9.6e-179 630.6 481 69.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.2e-178 627.9 484 69.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.0e-177 625.2 485 68.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.3e-175 620.2 392 79.8
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.2e-173 613.6 450 71.1
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.8e-170 602.4 395 75.7
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-169 600.1 468 67.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-169 599.7 468 67.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-169 599.7 468 67.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.1e-169 599.0 421 71.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.2e-165 587.0 462 66.7
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.1e-165 586.3 461 66.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-165 585.9 465 65.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-165 585.5 396 74.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.5e-163 579.3 466 65.5
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-161 573.2 487 63.2
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.5e-160 570.1 470 64.7
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-158 563.9 389 72.5
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 3.4e-152 542.3 456 60.1
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 7.7e-152 541.2 474 59.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.0e-151 538.5 474 58.9
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.6e-149 532.3 476 58.6
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 7.9e-149 531.2 471 57.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.0e-148 530.8 498 55.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 6.7e-148 528.1 457 59.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 8.8e-148 527.7 487 56.7
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 8.8e-148 527.7 470 58.5
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.5e-147 526.9 455 59.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 9.7e-147 524.2 463 59.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 2.8e-146 522.7 456 58.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.8e-146 522.7 488 56.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.1e-145 520.8 470 57.0
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.8e-145 520.0 488 56.6
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.3e-145 518.5 469 58.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.3e-145 518.5 498 55.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.4e-144 515.8 411 62.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.4e-144 515.8 495 54.9
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 3.4e-144 515.8 418 61.2
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 5.9e-144 515.0 444 57.0
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-143 513.8 444 57.2
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.7e-143 513.5 402 61.2
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.7e-143 513.5 443 59.1
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.8e-143 512.3 417 60.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.5e-143 511.5 463 56.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.5e-142 509.6 492 55.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.2e-142 508.8 493 54.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 4.2e-142 508.8 493 54.6
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 4.2e-142 508.8 490 54.9
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 9.4e-142 507.7 466 56.7
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.1e-141 506.5 402 62.2
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.7e-141 506.1 463 56.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.6e-141 505.8 470 56.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 4.7e-141 505.4 459 56.0
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 4.7e-141 505.4 495 55.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.7e-141 505.4 494 54.3
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.0e-140 504.2 445 58.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.0e-140 502.7 478 55.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 6.7e-140 501.5 474 55.1
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.1e-139 500.7 452 57.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 7.4e-139 498.0 450 56.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.4e-139 498.0 480 55.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 9.7e-139 497.7 441 56.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.3e-138 497.3 458 55.5
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.2e-138 496.5 434 57.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.7e-138 495.7 458 55.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.8e-138 495.4 465 55.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.3e-138 495.0 425 59.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.8e-137 493.4 454 56.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.4e-137 493.0 465 55.7
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.1e-137 492.7 433 57.3
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.1e-137 492.3 470 55.7
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.6e-136 489.6 486 54.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.5e-136 488.8 447 55.0
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-135 487.3 476 54.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.2e-135 486.5 410 60.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.8e-135 485.7 444 57.0
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.5e-135 485.0 416 58.9
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 8.5e-135 484.6 416 58.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 8.5e-135 484.6 398 60.6
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.5e-134 483.0 421 58.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.5e-134 481.9 390 61.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-133 479.9 486 53.9
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.6e-133 479.2 446 56.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 8.0e-133 478.0 416 58.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.4e-132 477.2 397 60.5
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.8e-132 476.9 444 55.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.3e-132 476.5 416 58.4
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 5.2e-132 475.3 446 55.8
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 6.7e-132 474.9 412 58.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.2e-131 474.2 448 53.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-131 474.2 410 57.1
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-131 473.8 399 59.1
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.6e-131 473.0 397 58.7
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.6e-131 473.0 547 49.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.3e-131 472.6 485 52.0
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 4.4e-131 472.2 410 56.8
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.7e-131 471.9 451 55.2
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 5.7e-131 471.9 461 53.8
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 7.5e-131 471.5 415 56.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 7.5e-131 471.5 485 51.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-130 470.7 398 58.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.2e-130 469.9 314 73.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.8e-130 468.8 487 51.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-129 466.5 465 53.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.1e-129 465.7 384 60.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 4.1e-129 465.7 388 58.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.3e-129 465.3 478 51.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 4.5e-128 462.2 404 57.9
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.9e-128 461.8 480 51.9
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.7e-128 461.5 394 56.6
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.8e-127 459.1 462 52.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 5.0e-127 458.8 488 50.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.6e-123 446.4 404 55.9
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.7e-122 443.7 496 48.6
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.7e-122 442.6 507 48.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 8.3e-122 441.4 479 49.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.4e-121 438.7 403 55.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 5.4e-121 438.7 398 56.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.0e-120 436.8 391 54.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 2.3e-119 433.3 437 51.3
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.6e-117 426.0 504 47.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 4.0e-116 422.5 714 37.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 4.0e-116 422.5 419 52.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.2e-116 422.2 546 45.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.4e-115 419.5 341 59.2
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.9e-112 408.7 373 52.5
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.8e-112 408.3 601 39.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 6.6e-111 405.2 340 60.0
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.6e-111 405.2 404 51.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 7.3e-110 401.7 358 58.9
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.8e-109 399.8 321 62.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.0e-107 393.7 396 51.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 7.0e-105 385.2 360 55.6
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 5.0e-103 379.0 377 52.0
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-84 317.8 204 76.0
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-73 280.8 218 61.0
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.2e-73 279.6 261 53.3
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.3e-70 269.6 252 55.2
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 7.9e-64 248.8 311 43.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.1e-57 225.7 231 50.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-56 224.6 221 54.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.1e-56 224.2 259 48.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.3e-54 216.9 284 45.1
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 7.6e-51 205.7 407 34.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.4e-44 184.9 410 33.9
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-43 181.4 303 37.6
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.4e-43 180.3 138 65.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.6e-40 170.2 176 56.8
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.6e-35 154.1 257 37.7
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.9e-31 140.2 286 33.2
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 4.8e-29 133.3 604 22.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.2e-25 120.2 99 59.6
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.6e-22 110.9 117 50.4
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.7e-22 109.8 109 51.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-19 101.3 121 47.9
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 7.5e-14 82.8 321 27.1
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.1e-12 75.9 97 44.3
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-09 68.2 94 41.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.7e-08 64.3 63 49.2
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.6e-08 63.9 61 52.5


User provided reference genes

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