Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 5.2e-266 920.6 505 100.0
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 9.6e-180 634.0 368 97.8
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 7.9e-166 587.8 469 70.6
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 1.5e-164 583.6 483 68.7
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 5.0e-152 542.0 501 69.3
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 2.8e-139 499.6 496 59.5
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 1.2e-132 477.6 485 57.5
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 7.5e-132 474.9 488 56.4
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 7.5e-132 474.9 488 56.4
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 9.8e-132 474.6 499 55.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 9.8e-132 474.6 499 55.9
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.9e-123 446.4 484 54.3
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 4.1e-114 416.0 491 51.7
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 5.4e-114 415.6 484 52.3
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.2e-113 414.5 358 62.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 1.0e-112 411.4 489 50.9
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.7e-105 386.7 343 61.8
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 3.1e-101 373.2 255 79.2
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 8.1e-86 322.0 352 51.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 1.0e-80 305.1 421 46.3
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 3.0e-56 223.8 364 37.1
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 7.4e-55 219.2 358 37.2
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 9.7e-55 218.8 363 34.4
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 6.3e-54 216.1 363 34.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.8e-53 214.5 352 37.5
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.1e-53 213.8 355 37.2
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 3.4e-52 210.3 351 35.6
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 1.7e-51 208.0 358 36.3
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.2e-51 207.6 351 40.5
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.9e-50 204.5 365 33.7
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 2.5e-50 204.1 357 36.7
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.2e-50 203.8 357 36.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 9.4e-50 202.2 349 36.7
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 9.4e-50 202.2 354 35.9
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 9.4e-50 202.2 352 36.1
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 1.6e-49 201.4 353 39.1
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 3.6e-49 200.3 355 36.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 3.6e-49 200.3 364 35.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 3.6e-49 200.3 352 35.2
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.9e-49 199.1 355 35.8
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.0e-48 198.7 351 34.5
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 2.3e-48 197.6 359 33.7
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.3e-48 197.6 359 33.1
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 2.3e-48 197.6 359 31.8
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 8.8e-48 195.7 359 33.1
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.1e-47 195.3 353 34.3
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 3.3e-47 193.7 260 40.4
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.4e-47 192.6 350 35.4
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 9.7e-47 192.2 350 34.9
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 9.7e-47 192.2 351 35.3
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.2e-46 191.0 332 34.9
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.8e-46 190.7 355 32.7
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 2.8e-46 190.7 358 34.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.3e-46 189.5 358 34.1
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 8.2e-46 189.1 358 33.8
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.1e-45 188.7 351 31.9
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-45 188.7 360 34.7
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.1e-45 188.7 350 34.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 1.4e-45 188.3 387 32.3
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 1.8e-45 188.0 354 31.9
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.8e-45 188.0 401 32.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 4.1e-45 186.8 351 36.8
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 5.3e-45 186.4 257 40.1
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 9.1e-45 185.7 358 33.8
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 1.2e-44 185.3 257 39.3
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 2.0e-44 184.5 344 34.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.6e-44 184.1 259 41.3
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 5.9e-44 183.0 365 33.4
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 5.9e-44 183.0 353 33.1
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 7.7e-44 182.6 351 32.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 1.0e-43 182.2 359 32.0
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.2e-43 181.0 356 31.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 6.5e-43 179.5 260 39.2
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 8.5e-43 179.1 358 32.7
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.4e-42 178.3 345 32.8
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 6.1e-41 172.9 338 33.1
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 7.9e-41 172.6 254 40.9
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 7.9e-41 172.6 337 33.2
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.9e-41 172.6 350 32.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.3e-40 171.0 358 31.3
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 2.3e-40 171.0 346 35.0
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 4.4e-39 166.8 353 32.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 7.4e-39 166.0 351 31.3
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 9.7e-39 165.6 369 32.0
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 1.4e-37 161.8 351 31.9
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.1e-37 160.6 171 49.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 3.1e-37 160.6 428 30.4
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 4.1e-37 160.2 337 29.4
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.1e-37 160.2 359 31.8
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.2e-36 158.7 351 29.1
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-36 158.3 359 32.0
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 2.0e-36 157.9 363 30.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-36 157.5 359 32.0
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 2.6e-36 157.5 355 31.5
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 1.3e-35 155.2 353 29.2
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.7e-35 154.8 300 33.7
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.7e-35 154.8 391 30.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-35 154.1 359 31.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 5.0e-35 153.3 171 50.3
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.9e-34 151.4 357 30.5
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 5.5e-34 149.8 355 29.3
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 7.2e-34 149.4 355 29.9
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.6e-33 148.3 370 29.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.8e-32 144.8 355 29.9
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.3e-32 144.4 170 42.9
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 3.0e-32 144.1 358 30.7
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 5.2e-32 143.3 361 28.8
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 5.2e-32 143.3 336 30.7
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.0e-31 141.4 350 33.1
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 2.0e-31 141.4 326 31.9
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.5e-31 139.4 403 31.8
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 1.8e-29 134.8 172 57.6
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.8e-29 134.8 367 27.0
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.6e-28 131.7 272 32.0
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.9e-27 127.5 170 41.8
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 6.5e-27 126.3 376 27.4
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 2.7e-25 120.9 360 31.1
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 6.1e-25 119.8 360 25.8
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-24 118.6 170 38.2
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.1e-21 107.1 378 25.9
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 7.0e-21 106.3 253 30.4
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.2e-20 105.5 300 26.0
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.2e-20 105.5 232 29.3
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.6e-20 105.1 313 26.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 3.5e-20 104.0 207 33.8
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 4.5e-20 103.6 153 37.9
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.9e-18 98.2 104 46.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.8e-17 94.4 180 32.8
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 1.5e-15 88.6 249 26.1
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.4e-13 81.3 75 54.7
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.3e-11 74.7 153 31.4
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.5e-10 71.2 63 55.6
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 9.5e-10 69.3 59 55.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-09 68.6 199 25.1
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.7e-09 67.0 270 28.9
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 4.7e-09 67.0 270 28.9
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.8e-08 65.1 187 28.9
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.9e-06 57.8 64 40.6


User provided reference genes

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