Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p00320 Brassica napus HOM05D003197 ORTHO05D003769 3.0e-54 214.9 108 100.0
BcaC02g12804 Brassica carinata HOM05D003197 ORTHO05D021860 1.3e-46 189.5 95 100.0
BolC4t21675H Brassica oleracea HOM05D003197 ORTHO05D003769 3.7e-44 181.4 91 100.0
BcaB06g29441 Brassica carinata HOM05D003197 ORTHO05D003769 9.7e-37 156.8 82 93.9
BcaC02g06979 Brassica carinata HOM05D003197 ORTHO05D003769 9.7e-37 156.8 82 93.9
C04p72860 Brassica napus HOM05D003197 ORTHO05D003769 9.7e-37 156.8 82 93.9
BolC4t28767H Brassica oleracea HOM05D003197 ORTHO05D003769 9.7e-37 156.8 82 93.9
Sp4g29450 Schrenkiella parvula HOM05D003197 ORTHO05D003769 2.2e-36 155.6 82 93.9
AL4G47080 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
AT2G47510 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
BcaB02g08764 Brassica carinata HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
BcaC02g12803 Brassica carinata HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
A04p34960 Brassica napus HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
A05p00410 Brassica napus HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
C04p00340 Brassica napus HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
BolC4t21676H Brassica oleracea HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
Carub.0004s3025 Capsella rubella HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
Thhalv10001422m.g Eutrema salsugineum HOM05D003197 ORTHO05D003769 2.8e-36 155.2 82 93.9
BolC4t21682H Brassica oleracea HOM05D003197 ORTHO05D000780 8.2e-36 153.7 82 92.7
AL8G25140 Arabidopsis lyrata HOM05D003197 ORTHO05D003769 1.1e-35 153.3 82 92.7
Aa31LG1G28820 Aethionema arabicum HOM05D003197 ORTHO05D003769 2.4e-35 152.1 82 91.5
AT5G50950 Arabidopsis thaliana HOM05D003197 ORTHO05D003769 3.1e-35 151.8 82 91.5
CARHR142910 Cardamine hirsuta HOM05D003197 ORTHO05D003769 3.1e-35 151.8 82 91.5
THA.LOC104802185 Tarenaya hassleriana HOM05D003197 ORTHO05D003769 4.1e-35 151.4 82 91.5
Carub.0008s1096 Capsella rubella HOM05D003197 ORTHO05D003769 9.0e-35 150.2 82 90.2
Carub.0008s1097 Capsella rubella HOM05D003197 ORTHO05D003769 2.0e-34 149.1 82 89.0
CARHR257280 Cardamine hirsuta HOM05D003197 ORTHO05D003769 2.9e-33 145.2 82 86.6
TAR636G2764 Trochodendron aralioides HOM05D003197 ORTHO05D003769 2.9e-33 145.2 82 87.8
Nn4g25715 Nelumbo nucifera HOM05D003197 ORTHO05D003769 3.8e-33 144.8 82 87.8
Nitab4.5_0000116g0300 Nicotiana tabacum HOM05D003197 ORTHO05D003769 3.8e-33 144.8 82 87.8
Peaxi162Scf00001g00341 Petunia axillaris HOM05D003197 ORTHO05D003769 3.8e-33 144.8 82 87.8
Oeu008339.1 Olea europaea HOM05D003197 ORTHO05D003769 5.0e-33 144.4 82 87.8
SGA_v2.0_scaffold334G49028 Striga asiatica HOM05D003197 ORTHO05D003769 5.0e-33 144.4 82 87.8
TAR365G0397 Trochodendron aralioides HOM05D003197 ORTHO05D003769 5.0e-33 144.4 82 87.8
CAN.G862.60 Capsicum annuum HOM05D003197 ORTHO05D003769 6.5e-33 144.1 80 88.8
MELO3C017938.2 Cucumis melo HOM05D003197 ORTHO05D003769 6.5e-33 144.1 82 87.8
Prupe.8G265300 Prunus persica HOM05D003197 ORTHO05D003769 6.5e-33 144.1 82 87.8
C04p00370 Brassica napus HOM05D003197 ORTHO05D000780 8.5e-33 143.7 91 83.5
CSS0002671 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
CSS0038182 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
CsaV3_4G001010 Cucumis sativus L. HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
QL12p027709 Quercus lobata HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
Rhsim07G0104500 Rhododendron simsii HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
SGA_v2.0_scaffold2G01379 Striga asiatica HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
TWI59G0305 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 8.5e-33 143.7 82 87.8
CAN.G1280.13 Capsicum annuum HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 86.6
Cpa.g.sc151.34 Carica papaya HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 86.6
FvH4_2g26140 Fragaria vesca HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 86.6
FAN24G1606 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 86.6
Peaxi162Scf00362g01196 Petunia axillaris HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 86.6
GSVIVG01028056001 Vitis vinifera HOM05D003197 ORTHO05D003769 1.1e-32 143.3 82 87.8
Cfa005865 Carpinus fangiana HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Eucgr.H01081 Eucalyptus grandis HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Nn3g21574 Nelumbo nucifera HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Nitab4.5_0007413g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Nitab4.5_0009662g0010 Nicotiana tabacum HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Os03g0337900 Oryza sativa ssp. japonica HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
TWI23G1200 Tripterygium wilfordii HOM05D003197 ORTHO05D003769 1.4e-32 142.9 82 86.6
Aqoxy2G02869 Aquilegia oxysepala HOM05D003197 ORTHO05D003769 1.9e-32 142.5 82 87.8
Duzib211G0223 Durio zibethinus HOM05D003197 ORTHO05D003769 1.9e-32 142.5 82 86.6
Migut.D00123 Erythranthe guttata HOM05D003197 ORTHO05D003769 1.9e-32 142.5 80 87.5
PSO731G0008 Papaver somniferum HOM05D003197 ORTHO05D003769 1.9e-32 142.5 82 86.6
PSO764G0236 Papaver somniferum HOM05D003197 ORTHO05D003769 1.9e-32 142.5 82 86.6
Zm00001eb016240 Zea mays HOM05D003197 ORTHO05D003769 2.5e-32 142.1 82 85.4
Ah.08g213570 Amaranthus hybridus HOM05D003197 ORTHO05D003769 3.2e-32 141.7 82 85.4
CSS0028216 Camellia sinensis var. sinensis HOM05D003197 ORTHO05D003769 3.2e-32 141.7 82 86.6
COL.COLO4_23299 Corchorus olitorius HOM05D003197 ORTHO05D003769 3.2e-32 141.7 82 86.6
Dinv33079 Davidia involucrata HOM05D003197 ORTHO05D003769 3.2e-32 141.7 82 86.6
Manes.01G223200 Manihot esculenta HOM05D003197 ORTHO05D003769 3.2e-32 141.7 82 86.6
CiPaw.07G112700 Carya illinoinensis HOM05D003197 ORTHO05D003769 4.2e-32 141.4 82 85.4
Cc01_g21120 Coffea canephora HOM05D003197 ORTHO05D003769 4.2e-32 141.4 82 86.6
Haze_04982 Corylus avellana HOM05D003197 ORTHO05D003769 4.2e-32 141.4 82 85.4
RcHm_v2.0_Chr6g0294521 Rosa chinensis HOM05D003197 ORTHO05D003769 4.2e-32 141.4 82 85.4
Solyc06g009830.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 4.2e-32 141.4 82 85.4
EL10Ac6g15230 Beta vulgaris HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
CDE01G0127 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 5.5e-32 141.0 102 72.5
Gohir.A07G126400 Gossypium hirsutum HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
Gohir.D07G130500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
Gorai.001G141300 Gossypium raimondii HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
Manes.03G058700 Manihot esculenta HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
Manes.05G000300 Manihot esculenta HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 85.4
Rhsim06G0161500 Rhododendron simsii HOM05D003197 ORTHO05D003769 5.5e-32 141.0 82 86.6
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 7.2e-32 140.6 82 85.4
HanXRQChr04g0114721 Helianthus annuus HOM05D003197 ORTHO05D003769 7.2e-32 140.6 82 85.4
Potri.002G201300 Populus trichocarpa HOM05D003197 ORTHO05D003769 7.2e-32 140.6 82 85.4
SalBow6G6079 Salvia bowleyana HOM05D003197 ORTHO05D003769 7.2e-32 140.6 82 86.6
Duzib138G1374 Durio zibethinus HOM05D003197 ORTHO05D003769 9.3e-32 140.2 82 85.4
HanXRQChr06g0167721 Helianthus annuus HOM05D003197 ORTHO05D003769 9.3e-32 140.2 82 85.4
Hma1.2p1_0494F.1_g165490 Hydrangea macrophylla HOM05D003197 ORTHO05D003769 9.3e-32 140.2 82 85.4
Lsat_1_v5_gn_8_164740 Lactuca sativa HOM05D003197 ORTHO05D003769 9.3e-32 140.2 82 84.1
Hund05454 Selenicereus undatus HOM05D003197 ORTHO05D003769 9.3e-32 140.2 82 84.1
Atru.chr6.1651 Acer truncatum HOM05D003197 ORTHO05D003769 1.2e-31 139.8 82 85.4
ClCG10G011140 Citrullus lanatus HOM05D003197 ORTHO05D003769 1.2e-31 139.8 82 86.6
FAN27G3019 Fragaria x ananassa HOM05D003197 ORTHO05D003769 1.2e-31 139.8 82 84.1
Lj5A370G55 Lonicera japonica HOM05D003197 ORTHO05D003769 1.2e-31 139.8 82 85.4
Sc05g0003520 Simmondsia chinensis HOM05D003197 ORTHO05D003769 1.2e-31 139.8 82 85.4
Solyc09g075450.3 Solanum lycopersicum HOM05D003197 ORTHO05D003769 1.6e-31 139.4 80 87.5
Sopen09g030240 Solanum pennellii HOM05D003197 ORTHO05D003769 1.6e-31 139.4 80 87.5
unitig_22.g5232 Utricularia gibba HOM05D003197 ORTHO05D003769 1.6e-31 139.4 82 85.4
CANSAT80G1297 Cannabis sativa HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 85.4
CDE12G0403 Ceratophyllum demersum HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 84.1
ECA236G1793 Erigeron canadensis HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 85.4
Gorai.004G051500 Gossypium raimondii HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 86.6
Lalb_Chr21g0309351 Lupinus albus HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 86.6
Sabra02G0157600 Salix brachista HOM05D003197 ORTHO05D003769 2.1e-31 139.0 82 84.1
Eucgr.H01083 Eucalyptus grandis HOM05D003197 ORTHO05D003769 2.7e-31 138.7 82 82.9
Ciclev10019838m.g Citrus clementina HOM05D003197 ORTHO05D003769 3.6e-31 138.3 82 84.1
MD00G1140200 Malus domestica HOM05D003197 ORTHO05D003769 3.6e-31 138.3 82 85.4
MD03G1292300 Malus domestica HOM05D003197 ORTHO05D003769 3.6e-31 138.3 82 85.4
PGR119G1313 Punica granatum HOM05D003197 ORTHO05D003769 4.6e-31 137.9 82 85.4
Glyma.02G015800 Glycine max HOM05D003197 ORTHO05D003769 6.1e-31 137.5 82 85.4
Gohir.A08G041500 Gossypium hirsutum HOM05D003197 ORTHO05D003769 6.1e-31 137.5 82 85.4
Hund12826 Selenicereus undatus HOM05D003197 ORTHO05D003769 6.1e-31 137.5 82 85.4
HPP92_013736 Vanilla planifolia HOM05D003197 ORTHO05D003769 6.1e-31 137.5 82 84.1
RcHm_v2.0_Chr6g0294511 Rosa chinensis HOM05D003197 ORTHO05D003769 7.9e-31 137.1 82 85.4
MSTRG.18133 Avicennia marina HOM05D003197 ORTHO05D003769 1.0e-30 136.7 82 82.9
Gohir.D08G051600 Gossypium hirsutum HOM05D003197 ORTHO05D003769 1.0e-30 136.7 82 85.4
Lalb_Chr02g0146531 Lupinus albus HOM05D003197 ORTHO05D003769 1.0e-30 136.7 82 84.1
Phvul.007G217700 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 1.0e-30 136.7 82 85.4
Thecc.01G306500 Theobroma cacao HOM05D003197 ORTHO05D003769 1.0e-30 136.7 82 82.9
VMungo0720G1283 Vigna mungo HOM05D003197 ORTHO05D003769 1.4e-30 136.3 82 84.1
arahy.Tifrunner.gnm1.ann1.BU45MS Arachis hypogaea HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 84.1
AUR62008718 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 84.1
AUR62025515 Chenopodium quinoa HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 84.1
Glyma.02G015700 Glycine max HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 84.1
Glyma.10G016200 Glycine max HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 84.1
Phvul.007G217600 Phaseolus vulgaris HOM05D003197 ORTHO05D003769 2.3e-30 135.6 82 82.9
arahy.Tifrunner.gnm1.ann1.5H6FCE Arachis hypogaea HOM05D003197 ORTHO05D003769 3.0e-30 135.2 82 84.1
Ca_10314_v3 Cicer arietinum L. HOM05D003197 ORTHO05D003769 3.9e-30 134.8 82 82.9
GSVIVG01031185001 Vitis vinifera HOM05D003197 ORTHO05D003769 3.9e-30 134.8 83 83.1
Sed0011546 Sechium edule HOM05D003197 ORTHO05D003769 5.1e-30 134.4 82 84.1
TPR.G33977 Trifolium pratense HOM05D003197 ORTHO05D003769 5.1e-30 134.4 82 82.9
ATR0796G113 Amborella trichopoda HOM05D003197 ORTHO05D003769 8.8e-30 133.7 82 82.9
VMungo0720G0285 Vigna mungo HOM05D003197 ORTHO05D003769 8.8e-30 133.7 82 82.9
FvH4_2g26121 Fragaria vesca HOM05D003197 ORTHO05D003769 1.5e-29 132.9 82 82.9
Lj5g0001576 Lotus japonicus HOM05D003197 ORTHO05D003769 1.9e-29 132.5 82 81.7
Psat6g163680 Pisum sativum HOM05D003197 ORTHO05D003769 2.5e-29 132.1 82 81.7
CBR_g26174 Chara braunii HOM05D003197 ORTHO05D003769 7.4e-29 130.6 83 77.1
Rhsim13G0008000 Rhododendron simsii HOM05D003197 ORTHO05D003769 1.3e-28 129.8 96 75.0
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 2.8e-28 128.6 83 74.7
Medtr1g087900 Medicago truncatula HOM05D003197 ORTHO05D003769 4.8e-28 127.9 82 78.0
AagrBONN_evm.TU.Sc2ySwM_228.3677 Anthoceros agrestis HOM05D003197 ORTHO05D003769 8.2e-28 127.1 83 73.5
Rhsim06G0161700 Rhododendron simsii HOM05D003197 ORTHO05D003769 2.4e-27 125.6 104 68.3
Pp3c23_19500 Physcomitrium patens HOM05D003197 ORTHO05D003769 2.0e-26 122.5 83 74.7
Pp3c20_7140 Physcomitrium patens HOM05D003197 ORTHO05D003769 2.6e-26 122.1 83 72.3
BNapus_Darmor_BZH_scaffold_99p00260 Brassica napus HOM05D003197 ORTHO05D003769 3.6e-23 111.7 101 64.4
BraA01t04618Z Brassica rapa HOM05D003197 ORTHO05D003769 4.7e-23 111.3 67 85.1
Cre01.g020223 Chlamydomonas reinhardtii HOM05D003197 ORTHO05D003769 1.4e-22 109.8 82 67.1
PRCOL_00002149 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 8.8e-22 107.1 83 66.3
CiPaw.08G092800 Carya illinoinensis HOM05D003197 ORTHO05D003769 2.6e-21 105.5 99 62.6
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 7.4e-21 104.0 82 70.7
Nitab4.5_0000803g0020 Nicotiana tabacum HOM05D003197 ORTHO05D003769 9.7e-21 103.6 82 70.7
AagrBONN_evm.TU.Sc2ySwM_344.987 Anthoceros agrestis HOM05D003197 ORTHO05D003769 3.1e-19 98.6 83 60.2
BcaC09g47717 Brassica carinata HOM05D003197 ORTHO05D003769 4.1e-19 98.2 51 96.1
Mapoly0045s0064 Marchantia polymorpha HOM05D003197 ORTHO05D003769 6.9e-19 97.4 83 61.4
Haze_27310 Corylus avellana HOM05D003197 ORTHO05D003769 5.9e-18 94.4 80 61.2
Cfa027230 Carpinus fangiana HOM05D003197 ORTHO05D003769 7.7e-18 94.0 82 63.4
Atru.chr5.1084 Acer truncatum HOM05D003197 ORTHO05D003769 1.1e-16 90.1 82 61.0
BcaC09g47716 Brassica carinata HOM05D003197 ORTHO05D003769 5.2e-14 81.3 66 68.2
Haze_27469 Corylus avellana HOM05D003197 ORTHO05D003769 8.8e-14 80.5 69 60.9
Cpa.g.sc27.118 Carica papaya HOM05D003197 ORTHO05D003769 1.1e-13 80.1 48 81.2
Oeu017666.1 Olea europaea HOM05D003197 ORTHO05D003769 1.1e-13 80.1 48 81.2
MCO15G383 Micromonas commoda HOM05D003197 ORTHO05D003769 2.0e-13 79.3 81 49.4
PRCOL_00000918 Prasinoderma coloniale HOM05D003197 ORTHO05D003769 5.7e-13 77.8 81 49.4
MD01G1075600 Malus domestica HOM05D003197 ORTHO05D003769 1.6e-07 59.7 61 54.1
Actinidia25186 Actinidia chinensis HOM05D003197 ORTHO05D003769 2.1e-07 59.3 35 74.3
BNapus_Darmor_BZH_scaffold_122p00230 Brassica napus HOM05D003197 ORTHO05D003769 8.0e-07 57.4 32 87.5


User provided reference genes

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