Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 0.0e+00 2921.7 1614 100.0
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 0.0e+00 2808.1 1575 99.4
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 0.0e+00 2744.1 1573 95.7
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 0.0e+00 2662.9 1614 92.3
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 0.0e+00 2658.6 1612 92.1
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 0.0e+00 2194.5 1657 75.9
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 0.0e+00 2179.1 1614 76.6
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 0.0e+00 2087.0 1655 71.0
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 0.0e+00 2007.3 1658 69.9
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 0.0e+00 1994.5 1655 69.6
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 0.0e+00 1988.4 1648 68.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 0.0e+00 1699.1 1658 60.0
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 0.0e+00 1460.7 1739 52.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 3.1e-264 916.4 1680 41.0
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 4.1e-264 916.0 1674 40.5
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 4.5e-263 912.5 1644 40.3
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 4.2e-253 879.4 1695 40.7
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 7.9e-252 875.2 1702 39.8
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 3.9e-251 872.8 1695 40.5
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 3.3e-250 869.8 1694 39.3
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 1.8e-243 847.4 1661 40.5
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 1.8e-243 847.4 1661 40.5
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 1.1e-240 838.2 1674 38.0
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 8.5e-238 828.6 1659 38.3
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 1.1e-232 811.6 1626 39.6
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 2.0e-231 807.4 1710 38.5
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 6.1e-228 795.8 1707 38.8
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 5.7e-226 789.3 1612 37.7
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 2.2e-225 787.3 1688 37.8
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 1.4e-224 784.6 1818 36.1
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 2.4e-224 783.9 1697 37.8
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 2.4e-224 783.9 1750 39.0
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.7e-223 780.4 1706 36.5
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 4.3e-221 773.1 1686 38.6
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 8.9e-219 765.4 1656 37.6
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 2.6e-218 763.8 1633 37.7
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 4.4e-218 763.1 1613 39.6
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 9.8e-218 761.9 1651 38.5
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 1.4e-216 758.1 1651 36.4
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.4e-216 758.1 1624 38.2
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.2e-215 755.0 1625 38.1
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.0e-214 751.9 1637 35.9
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 4.0e-211 740.0 1738 34.9
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.5e-210 738.0 1619 36.6
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.6e-210 737.3 1654 36.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 5.0e-206 723.0 1662 36.4
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 9.5e-205 718.8 1612 37.5
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 9.5e-205 718.8 1639 36.5
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.0e-198 697.2 1760 35.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 3.4e-194 683.7 1614 35.6
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 8.4e-193 679.1 1704 33.2
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 3.2e-192 677.2 1649 34.2
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 5.1e-190 669.8 1800 36.7
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 5.8e-186 656.4 1669 36.0
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.4e-185 652.9 1270 39.1
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 4.2e-184 650.2 1122 40.0
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 3.6e-180 637.1 1631 33.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.4e-179 634.4 1695 33.1
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.2e-178 632.1 1676 33.9
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.5e-178 630.2 1677 33.4
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.5e-178 630.2 1525 34.3
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.8e-178 629.8 1753 32.6
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.9e-177 627.5 1713 33.2
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 8.4e-177 625.9 1661 33.1
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 5.4e-176 623.2 1635 34.4
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 6.2e-172 609.8 1653 34.5
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.0e-170 604.7 1636 35.0
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 9.9e-170 602.4 1607 33.2
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.3e-169 602.1 1743 32.5
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 4.2e-168 597.0 1660 32.1
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.5e-167 594.0 2043 29.9
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.0e-166 590.9 1647 33.1
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 5.1e-166 590.1 1635 34.6
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.0e-161 575.9 1647 31.4
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.4e-160 572.0 936 38.9
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.8e-155 555.1 1651 32.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.9e-154 550.1 1718 31.6
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 1.4e-152 545.4 1464 35.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 4.1e-147 527.3 1683 29.5
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.0e-138 498.4 1663 29.8
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 2.6e-138 498.0 1620 30.1
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 5.7e-133 480.3 1639 30.1
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-122 446.0 772 38.9
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 4.1e-115 421.0 878 35.2
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.8e-110 403.3 1403 30.4
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 8.8e-110 403.3 1403 30.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 2.2e-108 398.7 1400 30.2
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.8e-102 379.0 808 33.2
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.4e-99 369.4 433 46.9
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.8e-99 369.0 897 39.1
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.3e-97 362.1 937 36.0
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 8.6e-89 333.6 884 30.5
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.7e-82 312.0 873 34.0
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 1.6e-79 302.8 189 81.5
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 8.4e-76 290.4 1031 27.9
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.3e-72 278.5 470 37.4
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 1.6e-71 276.2 1352 25.2
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.8e-71 275.4 1651 25.9
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 5.2e-70 271.2 846 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.6e-66 259.6 1062 25.7
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 6.2e-63 247.7 653 30.5
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.3e-62 244.6 844 35.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 7.1e-59 234.2 249 51.8
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.6e-58 233.0 612 29.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 2.3e-57 229.2 811 32.6
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-53 216.5 330 41.5
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.2e-50 206.8 233 47.2
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.3e-47 196.8 234 45.7
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.1e-46 192.2 167 61.7
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.0e-45 189.5 1010 28.1
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 7.1e-43 181.0 147 55.8
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.1e-42 179.5 231 43.3
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 1.3e-39 170.2 229 44.5
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 2.8e-39 169.1 192 49.0
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-36 159.5 192 43.8
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 9.1e-30 137.5 759 27.8
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.0e-29 136.3 450 34.7
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.2e-27 129.0 477 29.6
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 9.4e-27 127.5 94 64.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 6.1e-26 124.8 636 30.3
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.9e-25 122.1 162 37.7
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.1e-25 121.7 215 38.6
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 5.1e-25 121.7 188 38.8
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 6.7e-25 121.3 130 51.5
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 2.0e-24 119.8 140 41.4
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.7e-20 106.7 130 43.1
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 9.4e-19 100.9 589 27.7
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 2.1e-18 99.8 81 59.3
SMO167G0064 Selaginella moellendorffii HOM05D004493 ORTHO05D005117 4.7e-18 98.6 410 23.9
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 6.1e-18 98.2 184 50.0
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 5.2e-17 95.1 114 53.5
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 4.4e-16 92.0 103 37.9
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 4.1e-14 85.5 62 56.5
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-13 84.0 79 50.6
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 1.7e-12 80.1 79 49.4
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.7e-12 80.1 937 26.4
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.1e-11 77.4 245 26.5
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.4e-11 74.3 62 54.8
Gohir.A07G008001 Gossypium hirsutum HOM05D036473 ORTHO05D036031 8.0e-10 71.2 95 41.1
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 8.0e-10 71.2 68 50.0
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.3e-09 69.7 600 32.7
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.0e-09 69.3 55 54.5
Gorai.001G008300 Gossypium raimondii HOM05D036473 ORTHO05D036031 5.2e-09 68.6 88 42.0
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 6.7e-09 68.2 612 27.0
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.2e-08 67.4 59 54.2
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.6e-08 66.2 124 31.5
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.7e-07 62.4 47 57.4
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 6.3e-07 61.6 67 47.8
Zm00001eb411990 Zea mays HOM05D004493 ORTHO05D005117 2.4e-06 59.7 154 30.5


User provided reference genes

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