Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 4.9e-68 261.2 147 100.0
BcaC01g01392 Brassica carinata HOM05D006832 ORTHO05D008292 4.0e-17 92.0 59 81.4
C03p91530 Brassica napus HOM05D006832 ORTHO05D008292 1.5e-16 90.1 59 79.7
BolC3t21470H Brassica oleracea HOM05D006832 ORTHO05D008292 1.5e-16 90.1 59 79.7
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 2.6e-16 89.4 47 85.1
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 1.7e-15 86.7 42 95.2
A08p01560 Brassica napus HOM05D006832 ORTHO05D008292 1.7e-15 86.7 59 79.7
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 2.2e-15 86.3 69 62.3
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 2.8e-15 85.9 57 71.9
BcaB04g17079 Brassica carinata HOM05D006832 ORTHO05D008292 6.3e-15 84.7 59 72.9
BraA08t32210Z Brassica rapa HOM05D006832 ORTHO05D008292 8.3e-15 84.3 59 78.0
Sp1g40000 Schrenkiella parvula HOM05D006832 ORTHO05D008292 8.3e-15 84.3 59 71.2
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.4e-14 83.6 39 94.9
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.4e-14 83.6 40 92.5
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.4e-14 83.6 40 92.5
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-14 83.6 39 94.9
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 1.4e-14 83.6 51 78.4
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 1.4e-14 83.6 41 90.2
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 1.8e-14 83.2 43 86.0
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 2.4e-14 82.8 53 73.6
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.1e-14 82.4 40 90.0
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 3.1e-14 82.4 37 97.3
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.1e-14 82.4 37 97.3
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 3.1e-14 82.4 70 61.4
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 4.1e-14 82.0 48 83.3
A08p01660 Brassica napus HOM05D006832 ORTHO05D008292 5.4e-14 81.6 59 78.0
BraA08t32219Z Brassica rapa HOM05D006832 ORTHO05D008292 5.4e-14 81.6 59 78.0
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 5.4e-14 81.6 39 92.3
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.4e-14 81.6 37 97.3
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 5.4e-14 81.6 37 97.3
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 7.0e-14 81.3 37 97.3
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.0e-14 81.3 39 89.7
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 7.0e-14 81.3 53 73.6
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 9.2e-14 80.9 36 100.0
Thhalv10011680m.g Eutrema salsugineum HOM05D006832 ORTHO05D008292 9.2e-14 80.9 52 80.8
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.2e-14 80.9 62 69.4
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 9.2e-14 80.9 58 69.0
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 9.2e-14 80.9 38 94.7
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 1.2e-13 80.5 46 78.3
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 1.6e-13 80.1 37 94.6
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 1.6e-13 80.1 37 94.6
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.6e-13 80.1 44 81.8
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 2.7e-13 79.3 35 100.0
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.7e-13 79.3 35 100.0
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.7e-13 79.3 35 100.0
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 4.5e-13 78.6 36 94.4
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 4.5e-13 78.6 36 94.4
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 7.8e-13 77.8 47 78.7
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 7.8e-13 77.8 50 78.0
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 1.7e-12 76.6 43 79.1
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.3e-12 76.3 43 83.7
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 76.3 40 87.5
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 76.3 40 87.5
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.3e-12 76.3 40 87.5
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 2.3e-12 76.3 35 97.1
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 2.9e-12 75.9 39 87.2
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 3.8e-12 75.5 53 71.7
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 5.0e-12 75.1 37 91.9
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 6.6e-12 74.7 36 94.4
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 6.6e-12 74.7 37 89.2
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.1e-11 73.9 52 69.2
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.1e-11 73.9 47 76.6
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 1.1e-11 73.9 43 76.7
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 1.5e-11 73.6 49 69.4
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 1.9e-11 73.2 35 94.3
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-11 73.2 35 94.3
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 2.5e-11 72.8 46 76.1
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.5e-11 72.8 36 88.9
AL1G62020 Arabidopsis lyrata HOM05D006832 ORTHO05D008292 3.3e-11 72.4 62 66.1
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.3e-11 72.4 53 69.8
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 7.3e-11 71.2 32 100.0
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 9.5e-11 70.9 31 100.0
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 9.5e-11 70.9 34 94.1
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 9.5e-11 70.9 32 96.9
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 1.2e-10 70.5 32 96.9
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.2e-10 70.5 44 75.0
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-10 70.1 33 97.0
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-10 70.1 33 97.0
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.6e-10 70.1 35 88.6
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 2.8e-10 69.3 34 94.1
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 2.8e-10 69.3 50 72.0
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.6e-10 68.9 32 96.9
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 3.6e-10 68.9 35 88.6
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 3.6e-10 68.9 34 91.2
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.6e-10 68.9 37 83.8
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 3.6e-10 68.9 37 83.8
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 4.7e-10 68.6 33 93.9
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 4.7e-10 68.6 31 100.0
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 4.7e-10 68.6 33 93.9
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 1.0e-09 67.4 30 100.0
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.0e-09 67.4 30 100.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 2.3e-09 66.2 33 87.9
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 2.3e-09 66.2 34 91.2
AT2G15530 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 3.1e-09 65.9 61 57.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 1.5e-08 63.5 50 64.0
AT1G53460 Arabidopsis thaliana HOM05D006832 ORTHO05D008292 3.4e-08 62.4 63 60.3
Carub.0001s4265 Capsella rubella HOM05D006832 ORTHO05D008292 5.8e-08 61.6 64 64.1
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.8e-08 61.6 38 73.7
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 5.8e-08 61.6 38 73.7
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 9.8e-08 60.8 33 81.8
CARHR043680 Cardamine hirsuta HOM05D006832 ORTHO05D008292 4.9e-07 58.5 64 59.4
Medtr6g070990 Medicago truncatula HOM05D007699 ORTHO05D009796 1.1e-06 57.4 26 96.2
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 1.4e-06 57.0 37 70.3
Aa31LG10G1740 Aethionema arabicum HOM05D006832 ORTHO05D008292 4.1e-06 55.5 63 50.8
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.0e-06 54.7 32 75.0
THA.LOC104810427 Tarenaya hassleriana HOM05D006832 ORTHO05D008292 7.0e-06 54.7 48 60.4


User provided reference genes

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