Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 3.7e-70 268.1 133 100.0
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 1.4e-66 256.1 127 100.0
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 3.7e-38 161.8 113 75.2
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 8.2e-38 160.6 113 74.3
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 4.5e-36 154.8 117 72.6
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 4.5e-36 154.8 117 71.8
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 5.9e-36 154.5 117 72.6
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 5.9e-36 154.5 118 71.2
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 1.0e-35 153.7 117 72.6
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 2.2e-35 152.5 117 70.9
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 3.8e-35 151.8 114 72.8
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 3.8e-35 151.8 114 72.8
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 3.8e-35 151.8 114 72.8
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 6.5e-35 151.0 117 70.9
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 7.2e-34 147.5 117 69.2
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 9.4e-34 147.1 117 68.4
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.2e-33 146.7 117 70.1
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.0e-32 143.7 117 66.7
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.8e-30 135.6 117 61.5
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 4.8e-30 134.8 117 61.5
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.8e-29 132.9 117 60.7
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.8e-29 132.9 117 60.7
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 1.8e-29 132.9 117 61.5
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 1.8e-29 132.9 117 61.5
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 4.1e-29 131.7 117 60.7
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 4.1e-29 131.7 117 61.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 5.3e-29 131.3 117 60.7
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 5.3e-29 131.3 117 59.0
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 9.1e-29 130.6 157 52.2
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 9.1e-29 130.6 157 52.2
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 9.1e-29 130.6 117 61.5
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.2e-28 130.2 117 59.8
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.2e-28 130.2 117 60.7
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 1.2e-28 130.2 117 59.8
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 1.2e-28 130.2 117 59.8
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 2.7e-28 129.0 117 59.8
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 2.7e-28 129.0 117 59.8
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 3.5e-28 128.6 118 60.2
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 3.5e-28 128.6 117 59.0
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 4.5e-28 128.3 117 59.8
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 4.5e-28 128.3 116 61.2
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 4.5e-28 128.3 117 59.8
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 5.9e-28 127.9 117 58.1
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 5.9e-28 127.9 117 59.0
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 5.9e-28 127.9 117 59.0
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 7.7e-28 127.5 117 59.0
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.0e-27 127.1 137 53.3
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 1.0e-27 127.1 117 59.8
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.3e-27 126.7 117 57.3
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.3e-27 126.7 117 59.0
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 1.7e-27 126.3 117 59.0
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.7e-27 126.3 117 59.0
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 1.7e-27 126.3 117 59.0
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.7e-27 126.3 117 58.1
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 2.2e-27 125.9 117 57.3
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 2.9e-27 125.6 117 59.0
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 2.9e-27 125.6 117 59.0
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 2.9e-27 125.6 117 59.0
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.9e-27 125.6 117 58.1
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 3.8e-27 125.2 117 59.0
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.0e-27 124.8 117 59.0
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 5.0e-27 124.8 117 59.0
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 5.0e-27 124.8 117 58.1
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 5.0e-27 124.8 117 55.6
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 1.1e-26 123.6 117 58.1
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 1.1e-26 123.6 117 59.0
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 1.5e-26 123.2 117 57.3
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.9e-26 122.9 117 58.1
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.9e-26 122.9 117 58.1
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.9e-26 122.9 117 57.3
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 1.9e-26 122.9 117 57.3
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 2.5e-26 122.5 117 56.4
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 2.5e-26 122.5 117 57.3
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 2.5e-26 122.5 117 57.3
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 2.5e-26 122.5 117 59.0
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 2.5e-26 122.5 117 59.8
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 4.2e-26 121.7 117 55.6
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 4.2e-26 121.7 117 56.4
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 5.5e-26 121.3 117 55.6
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 5.5e-26 121.3 117 56.4
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 9.4e-26 120.6 117 56.4
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 9.4e-26 120.6 117 57.3
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 9.4e-26 120.6 117 57.3
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 1.2e-25 120.2 117 56.4
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 1.6e-25 119.8 117 57.3
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 1.6e-25 119.8 117 55.6
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 2.1e-25 119.4 117 57.3
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.0e-24 117.1 117 56.4
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 1.4e-24 116.7 116 56.0
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 2.3e-24 115.9 116 55.2
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 2.3e-24 115.9 117 53.8
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 4.0e-24 115.2 117 54.7
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 1.2e-23 113.6 117 53.8
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.2e-23 113.6 117 54.7
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 3.4e-23 112.1 114 54.4
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 1.3e-22 110.2 117 53.8
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.2e-22 109.4 117 53.8
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.8e-21 106.3 106 56.6
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 4.1e-21 105.1 67 76.1
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 1.2e-17 93.6 84 60.7
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.6e-17 93.2 115 47.0
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.1e-17 92.8 115 46.1
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 2.8e-17 92.4 114 49.1
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 1.8e-16 89.7 115 46.1
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.8e-16 89.7 115 46.1
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.2e-15 87.0 73 60.3
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 1.5e-15 86.7 110 47.3
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 4.4e-15 85.1 117 43.6
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 4.4e-15 85.1 115 44.3
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 5.7e-15 84.7 73 57.5
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 7.5e-15 84.3 99 52.5
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 9.8e-15 84.0 73 57.5
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 2.2e-14 82.8 117 43.6
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 3.2e-13 79.0 123 40.7
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.2e-12 77.0 119 41.2
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.0e-12 76.3 110 43.6
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 7.8e-12 74.3 65 61.5
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 2.3e-11 72.8 123 38.2
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 8.6e-11 70.9 32 100.0
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.9e-10 69.7 94 47.9
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.5e-10 69.3 105 42.9
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 2.0e-07 59.7 80 43.8
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 5.8e-07 58.2 58 56.9
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 5.8e-07 58.2 130 34.6
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 8.3e-06 54.3 65 44.6


User provided reference genes

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