Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p83310 Brassica napus HOM05D002450 ORTHO05D020169 9.5e-52 206.5 97 100.0
C07p56060 Brassica napus HOM05D002450 ORTHO05D020169 3.2e-47 191.4 100 93.0
BolC3t20267H Brassica oleracea HOM05D002450 ORTHO05D020169 1.3e-37 159.5 81 96.3
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 5.8e-17 90.9 46 93.5
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 4.9e-16 87.8 51 82.4
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 4.9e-16 87.8 51 82.4
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 2.5e-15 85.5 49 87.8
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 5.5e-15 84.3 44 90.9
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 2.1e-14 82.4 46 87.0
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 2.1e-14 82.4 46 87.0
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 2.7e-14 82.0 46 89.1
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 3.5e-14 81.6 45 91.1
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 6.0e-14 80.9 50 86.0
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.0e-13 80.1 50 84.0
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 1.0e-13 80.1 50 84.0
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.3e-13 79.7 50 84.0
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 8.7e-13 77.0 43 86.0
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 8.7e-13 77.0 43 86.0
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 8.7e-13 77.0 43 86.0
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 8.7e-13 77.0 43 86.0
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 3.3e-12 75.1 41 87.8
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 7.4e-12 73.9 50 80.0
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.8e-11 71.2 50 72.0
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 1.4e-10 69.7 47 78.7
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.4e-10 69.7 39 87.2
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 1.8e-10 69.3 46 71.7
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 1.8e-10 69.3 41 80.5
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 1.8e-10 69.3 69 58.0
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 2.4e-10 68.9 46 76.1
Cpa.g.sc123.18 Carica papaya HOM05D002450 ORTHO05D020169 3.1e-10 68.6 45 77.8
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 3.1e-10 68.6 45 77.8
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 5.3e-10 67.8 48 72.9
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 5.3e-10 67.8 45 77.8
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 5.3e-10 67.8 46 71.7
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 5.3e-10 67.8 46 71.7
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 5.3e-10 67.8 39 82.1
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 5.3e-10 67.8 39 82.1
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 5.3e-10 67.8 49 71.4
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 6.9e-10 67.4 49 69.4
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 6.9e-10 67.4 66 53.0
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 9.0e-10 67.0 39 82.1
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 9.0e-10 67.0 45 75.6
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 9.0e-10 67.0 46 67.4
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 9.0e-10 67.0 53 58.5
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.2e-09 66.6 39 82.1
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.2e-09 66.6 49 69.4
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 1.2e-09 66.6 39 82.1
Atru.chr9.2194 Acer truncatum HOM05D002450 ORTHO05D002953 1.5e-09 66.2 45 75.6
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 1.5e-09 66.2 46 67.4
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 1.5e-09 66.2 50 68.0
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.5e-09 66.2 43 74.4
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 1.5e-09 66.2 50 68.0
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 1.5e-09 66.2 50 68.0
PGSC0003DMG401021510 Solanum tuberosum HOM05D002450 ORTHO05D002953 1.5e-09 66.2 50 68.0
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 2.0e-09 65.9 39 79.5
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 2.0e-09 65.9 41 75.6
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 2.0e-09 65.9 51 66.7
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 2.0e-09 65.9 51 66.7
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 2.0e-09 65.9 39 79.5
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 2.6e-09 65.5 50 66.0
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 2.6e-09 65.5 49 69.4
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 2.6e-09 65.5 40 75.0
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 3.4e-09 65.1 39 79.5
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 3.4e-09 65.1 39 79.5
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 3.4e-09 65.1 39 79.5
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 3.4e-09 65.1 40 80.0
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.5e-09 64.7 48 64.6
AUR62029509 Chenopodium quinoa HOM05D002450 ORTHO05D020169 4.5e-09 64.7 62 59.7
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 4.5e-09 64.7 39 76.9
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 5.9e-09 64.3 38 78.9
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 5.9e-09 64.3 41 70.7
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 5.9e-09 64.3 39 76.9
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 5.9e-09 64.3 39 76.9
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 7.6e-09 63.9 39 79.5
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 7.6e-09 63.9 39 76.9
Cpa.g.sc21.108 Carica papaya HOM05D002450 ORTHO05D002953 1.0e-08 63.5 45 73.3
Haze_25525 Corylus avellana HOM05D002450 ORTHO05D020169 1.0e-08 63.5 48 70.8
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 1.0e-08 63.5 36 80.6
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 1.0e-08 63.5 45 71.1
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.0e-08 63.5 49 65.3
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.3e-08 63.2 54 63.0
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.3e-08 63.2 51 64.7
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 1.3e-08 63.2 36 83.3
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 1.3e-08 63.2 36 83.3
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 1.3e-08 63.2 41 70.7
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 1.7e-08 62.8 39 74.4
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.7e-08 62.8 47 66.0
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.7e-08 62.8 47 66.0
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.7e-08 62.8 40 72.5
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 2.2e-08 62.4 39 74.4
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 2.2e-08 62.4 39 74.4
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 2.2e-08 62.4 49 63.3
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 2.9e-08 62.0 39 74.4
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 2.9e-08 62.0 39 74.4
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 2.9e-08 62.0 47 66.0
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 2.9e-08 62.0 39 74.4
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 2.9e-08 62.0 39 74.4
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 2.9e-08 62.0 39 74.4
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 3.8e-08 61.6 38 76.3
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 3.8e-08 61.6 39 76.9
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 3.8e-08 61.6 43 72.1
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 3.8e-08 61.6 39 74.4
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 5.0e-08 61.2 39 71.8
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 6.5e-08 60.8 45 66.7
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 6.5e-08 60.8 45 66.7
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 6.5e-08 60.8 41 73.2
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 8.5e-08 60.5 39 71.8
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 8.5e-08 60.5 40 75.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 8.5e-08 60.5 40 75.0
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 8.5e-08 60.5 36 77.8
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 1.1e-07 60.1 39 69.2
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.1e-07 60.1 44 65.9
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 1.1e-07 60.1 46 60.9
Nitab4.5_0000197g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.1e-07 60.1 47 63.8
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 1.1e-07 60.1 39 71.8
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 1.4e-07 59.7 34 82.4
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 2.5e-07 58.9 39 71.8
HPP92_026569 Vanilla planifolia HOM05D002450 ORTHO05D020169 2.5e-07 58.9 43 65.1
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 4.2e-07 58.2 36 77.8
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 7.2e-07 57.4 43 69.8
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 7.2e-07 57.4 39 69.2
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 2.1e-06 55.8 36 72.2
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 2.1e-06 55.8 39 71.8
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 2.7e-06 55.5 73 47.9
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 2.7e-06 55.5 40 65.0
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 3.6e-06 55.1 40 67.5
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 3.6e-06 55.1 37 73.0
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 4.6e-06 54.7 40 70.0
Os03g0441000 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 6.1e-06 54.3 43 62.8


User provided reference genes

Program Settings