Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 5.4e-198 694.1 346 100.0
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 5.6e-179 630.9 323 96.9
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 7.8e-173 610.5 323 94.7
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.1e-165 585.9 324 91.4
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.3e-164 583.2 323 91.3
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.5e-152 541.6 325 85.2
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 5.5e-142 508.1 345 78.6
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 2.7e-141 505.8 325 81.5
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 5.7e-139 498.0 326 80.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 7.4e-139 497.7 321 80.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 4.8e-138 495.0 323 79.9
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 4.1e-137 491.9 326 79.4
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 1.4e-129 466.8 328 74.7
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.7e-127 459.9 322 73.6
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 1.6e-125 453.4 322 76.1
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.3e-115 419.1 318 71.4
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 1.4e-113 413.7 326 66.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 4.1e-113 412.1 318 70.8
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 5.3e-113 411.8 292 70.9
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.2e-112 410.6 329 66.0
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 7.7e-112 407.9 332 65.4
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.3e-111 407.1 318 70.1
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.2e-111 406.4 320 65.3
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 2.9e-111 406.0 291 70.1
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 6.5e-111 404.8 299 69.2
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 8.5e-111 404.4 329 64.4
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.1e-110 404.1 292 69.9
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.5e-110 403.7 325 64.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 1.5e-110 403.7 329 64.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 1.9e-110 403.3 296 69.3
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 2.5e-110 402.9 330 64.8
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.2e-110 402.1 293 68.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 7.2e-110 401.4 329 64.1
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.2e-109 400.6 329 64.1
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.2e-109 400.6 329 64.1
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.1e-109 399.8 328 65.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 4.7e-109 398.7 334 63.8
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.0e-108 397.5 336 63.1
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.4e-108 397.1 331 65.0
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.4e-108 397.1 292 68.5
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 1.4e-108 397.1 290 70.0
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.8e-108 396.7 313 65.8
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 5.2e-108 395.2 325 63.7
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 5.2e-108 395.2 325 64.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 6.7e-108 394.8 318 63.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 8.8e-108 394.4 292 68.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 8.8e-108 394.4 301 66.8
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 8.8e-108 394.4 332 62.7
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 8.8e-108 394.4 290 69.7
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 8.8e-108 394.4 293 68.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 1.5e-107 393.7 328 63.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.0e-107 393.3 291 66.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.0e-107 393.3 327 62.7
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.0e-107 393.3 291 69.1
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 2.6e-107 392.9 324 62.7
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 7.5e-107 391.3 291 67.0
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.3e-106 390.6 295 68.1
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 1.7e-106 390.2 293 67.9
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 2.2e-106 389.8 285 69.5
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.2e-106 389.8 291 66.7
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.8e-106 389.4 291 68.0
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.7e-106 389.0 288 67.7
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 4.8e-106 388.7 291 67.7
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 5.3e-105 385.2 358 58.9
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 5.3e-105 385.2 301 67.1
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 9.1e-105 384.4 340 60.3
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-104 384.0 324 62.0
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.6e-104 383.6 324 62.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 2.0e-104 383.3 290 66.9
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 2.7e-104 382.9 330 61.8
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 3.5e-104 382.5 277 70.4
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.7e-103 380.2 314 63.4
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.7e-103 380.2 292 65.4
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 2.2e-103 379.8 322 61.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 5.0e-103 378.6 295 64.4
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.1e-102 377.5 283 65.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.2e-102 375.9 326 58.9
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 4.2e-102 375.6 303 64.7
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.7e-101 372.9 333 60.4
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.0e-100 370.9 335 59.1
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.3e-100 369.8 291 63.6
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.0e-100 369.4 331 58.0
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.0e-99 366.7 271 69.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 2.0e-99 366.7 294 61.6
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 9.8e-99 364.4 291 62.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 1.3e-98 364.0 294 62.2
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 2.2e-98 363.2 321 58.6
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.8e-98 362.8 340 57.6
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 3.7e-98 362.5 299 62.9
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.3e-98 361.7 313 64.2
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 7.0e-97 358.2 290 61.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 3.5e-96 355.9 342 57.0
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 5.9e-96 355.1 309 60.2
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 2.3e-95 353.2 327 56.6
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.8e-93 346.3 285 62.5
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.2e-90 336.7 299 59.2
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.7e-90 335.9 311 56.6
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.1e-89 332.8 288 59.0
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 2.3e-87 326.6 283 59.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.8e-87 325.9 274 63.5
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.0e-87 325.5 271 62.7
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 1.1e-86 324.3 286 58.0
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 2.1e-85 320.1 299 55.5
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 2.8e-85 319.7 283 57.2
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 4.7e-85 318.9 284 57.0
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 6.8e-84 315.1 282 57.1
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 2.0e-83 313.5 271 57.9
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.3e-82 310.8 292 56.2
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 2.9e-82 309.7 271 56.8
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.9e-78 297.0 280 55.4
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.6e-77 292.7 233 63.9
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.1e-76 291.2 244 59.8
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.0e-76 289.3 227 66.5
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 4.4e-75 285.8 318 54.7
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.3e-74 284.3 286 53.1
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 2.2e-74 283.5 272 54.4
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 5.2e-68 262.3 195 69.7
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 6.8e-68 261.9 241 58.1
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 8.3e-66 255.0 293 49.5
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 1.1e-65 254.6 283 50.5
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 1.2e-64 251.1 272 55.1
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 1.5e-62 244.2 245 56.7
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 6.4e-50 202.2 292 40.8
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 8.7e-47 191.8 133 69.9
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.3e-45 188.0 121 73.6
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 6.9e-44 182.2 93 98.9
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 2.0e-43 180.6 314 37.3
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.9e-40 168.7 120 67.5
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 3.0e-39 166.8 301 36.5
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.8e-36 157.5 117 64.1
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.2e-35 154.8 88 83.0
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 8.4e-34 148.7 119 66.4
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-33 147.9 131 59.5
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 1.9e-25 120.9 69 79.7
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 5.7e-22 109.4 75 69.3
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 5.7e-22 109.4 69 75.4
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.3e-21 105.9 110 52.7
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 1.3e-18 98.2 304 29.6
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 7.2e-17 92.4 312 26.9
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.6e-16 91.3 73 58.9
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 6.1e-16 89.4 282 28.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.1e-14 85.1 81 58.0
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 5.7e-14 82.8 346 24.9
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 1.7e-13 81.3 379 24.0
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 6.3e-13 79.3 379 23.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 6.3e-13 79.3 69 56.5
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 1.4e-12 78.2 47 76.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 4.1e-12 76.6 75 54.7
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.3e-12 76.3 51 64.7
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 6.9e-12 75.9 233 26.6
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 2.0e-11 74.3 66 56.1
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 8.5e-10 68.9 252 24.2
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 6.1e-08 62.8 66 53.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 1.0e-07 62.0 41 68.3
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.0e-07 60.5 149 31.5


User provided reference genes

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