Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p73280 Brassica napus HOM05D001248 ORTHO05D040920 2.9e-85 318.5 164 100.0
C02p24410 Brassica napus HOM05D001248 ORTHO05D021809 2.1e-67 259.2 154 90.9
BolC3t13446H Brassica oleracea HOM05D001248 ORTHO05D021809 2.7e-67 258.8 154 90.3
C09p10760 Brassica napus HOM05D001248 ORTHO05D021809 8.8e-66 253.8 154 88.3
A05p26120 Brassica napus HOM05D001248 ORTHO05D021809 8.2e-64 247.3 154 87.7
BolC1t00638H Brassica oleracea HOM05D001248 ORTHO05D021809 5.5e-60 234.6 160 83.8
BolC3t19624H Brassica oleracea HOM05D001248 ORTHO05D040920 1.9e-52 209.5 106 100.0
BcaC05g29323 Brassica carinata HOM05D001248 ORTHO05D021809 4.7e-43 178.3 126 81.7
BcaNung00833 Brassica carinata HOM05D001248 ORTHO05D001183 7.3e-20 101.3 73 79.5
C07p51400 Brassica napus HOM05D001248 ORTHO05D001183 1.2e-19 100.5 72 80.6
Sp7g19960 Schrenkiella parvula HOM05D001248 ORTHO05D001183 4.7e-19 98.6 73 76.7
A03p52970 Brassica napus HOM05D001248 ORTHO05D001183 6.2e-19 98.2 73 78.1
BolC7t45638H Brassica oleracea HOM05D001248 ORTHO05D001183 1.1e-18 97.4 73 76.7
BraA03t14371Z Brassica rapa HOM05D001248 ORTHO05D001183 1.1e-18 97.4 72 79.2
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 2.4e-18 96.3 72 77.8
BraA01t01256Z Brassica rapa HOM05D001248 ORTHO05D001183 2.4e-18 96.3 72 77.8
BcaC06g30680 Brassica carinata HOM05D001248 ORTHO05D001183 3.1e-18 95.9 73 76.7
BcaNung02247 Brassica carinata HOM05D001248 ORTHO05D001183 3.1e-18 95.9 73 75.3
BcaC09g51201 Brassica carinata HOM05D001248 ORTHO05D001183 4.0e-18 95.5 73 75.3
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 4.0e-18 95.5 73 75.3
A01p13120 Brassica napus HOM05D001248 ORTHO05D001183 1.2e-17 94.0 105 59.0
BolC1t01535H Brassica oleracea HOM05D001248 ORTHO05D001183 2.0e-17 93.2 72 75.0
AL7G32140 Arabidopsis lyrata HOM05D001248 ORTHO05D001183 2.6e-17 92.8 73 71.2
Thhalv10025897m.g Eutrema salsugineum HOM05D001248 ORTHO05D001183 3.4e-17 92.4 73 72.6
Carub.0007s1961 Capsella rubella HOM05D001248 ORTHO05D001183 4.4e-17 92.0 73 69.9
AT4G21790 Arabidopsis thaliana HOM05D001248 ORTHO05D001183 9.9e-17 90.9 73 69.9
CARHR228560 Cardamine hirsuta HOM05D001248 ORTHO05D001183 9.9e-17 90.9 73 71.2
Nitab4.5_0007482g0070 Nicotiana tabacum HOM05D001248 ORTHO05D001183 1.3e-16 90.5 74 63.5
Aa31LG6G3770 Aethionema arabicum HOM05D001248 ORTHO05D001183 2.2e-16 89.7 73 68.5
Sabra04G0010000 Salix brachista HOM05D001248 ORTHO05D001183 2.9e-16 89.4 80 60.0
CAN.G569.20 Capsicum annuum HOM05D001248 ORTHO05D001183 3.8e-16 89.0 74 63.5
Peaxi162Scf00262g00615 Petunia axillaris HOM05D001248 ORTHO05D001183 3.8e-16 89.0 73 63.0
BcaC09g51202 Brassica carinata HOM05D001248 ORTHO05D001183 6.4e-16 88.2 72 69.4
C01p15810 Brassica napus HOM05D001248 ORTHO05D001183 6.4e-16 88.2 72 69.4
BolC1t01534H Brassica oleracea HOM05D001248 ORTHO05D001183 6.4e-16 88.2 72 69.4
Nitab4.5_0021613g0010 Nicotiana tabacum HOM05D001248 ORTHO05D028683 6.4e-16 88.2 74 62.2
BraA01t01255Z Brassica rapa HOM05D001248 ORTHO05D001183 8.4e-16 87.8 72 69.4
Nitab4.5_0010096g0030 Nicotiana tabacum HOM05D001248 ORTHO05D001183 1.1e-15 87.4 72 65.3
Atru.chr10.2186 Acer truncatum HOM05D001248 ORTHO05D001183 2.4e-15 86.3 81 60.5
TWI38G1274 Tripterygium wilfordii HOM05D001248 ORTHO05D001183 3.2e-15 85.9 73 61.6
Solyc02g080370.3 Solanum lycopersicum HOM05D001248 ORTHO05D001183 5.4e-15 85.1 88 53.4
Sopen02g025070 Solanum pennellii HOM05D001248 ORTHO05D001183 5.4e-15 85.1 88 53.4
unitig_744.g24522 Utricularia gibba HOM05D001248 ORTHO05D001183 5.4e-15 85.1 73 58.9
vmacro03696 Vaccinium macrocarpon HOM05D001248 ORTHO05D001183 5.4e-15 85.1 85 54.1
Migut.H01564 Erythranthe guttata HOM05D001248 ORTHO05D001183 7.1e-15 84.7 73 61.6
Lj2A270G30 Lonicera japonica HOM05D001248 ORTHO05D001183 7.1e-15 84.7 73 60.3
Potri.004G018100 Populus trichocarpa HOM05D001248 ORTHO05D001183 9.2e-15 84.3 73 60.3
Prupe.4G023400 Prunus persica HOM05D001248 ORTHO05D001183 9.2e-15 84.3 73 56.2
PGSC0003DMG400016487 Solanum tuberosum HOM05D001248 ORTHO05D001183 9.2e-15 84.3 88 54.5
MD05G1343500 Malus domestica HOM05D001248 ORTHO05D001183 1.2e-14 84.0 73 56.2
CAN.G105.17 Capsicum annuum HOM05D001248 ORTHO05D001183 1.6e-14 83.6 73 61.6
Duzib235G1409 Durio zibethinus HOM05D001248 ORTHO05D001183 2.1e-14 83.2 73 58.9
PGSC0003DMG400011291 Solanum tuberosum HOM05D001248 ORTHO05D001183 2.1e-14 83.2 73 58.9
COL.COLO4_31750 Corchorus olitorius HOM05D001248 ORTHO05D001183 2.7e-14 82.8 73 58.9
Duzib160G0867 Durio zibethinus HOM05D001248 ORTHO05D001183 2.7e-14 82.8 73 56.2
SGA_v2.0_scaffold4G01927 Striga asiatica HOM05D001248 ORTHO05D001183 2.7e-14 82.8 73 58.9
CiPaw.09G089700 Carya illinoinensis HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 57.5
Gohir.A05G168800 Gossypium hirsutum HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 54.8
Gohir.D05G172000 Gossypium hirsutum HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 54.8
Manes.16G009700 Manihot esculenta HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 60.3
THA.LOC104812963 Tarenaya hassleriana HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 60.3
THA.LOC104813008 Tarenaya hassleriana HOM05D001248 ORTHO05D001183 3.5e-14 82.4 73 61.6
Thecc.06G217900 Theobroma cacao HOM05D001248 ORTHO05D001183 4.6e-14 82.0 73 57.5
MSTRG.14641 Avicennia marina HOM05D001248 ORTHO05D001183 6.0e-14 81.6 73 58.9
Cpa.g.sc198.34 Carica papaya HOM05D001248 ORTHO05D001183 6.0e-14 81.6 73 56.2
Gorai.009G177100 Gossypium raimondii HOM05D001248 ORTHO05D001183 6.0e-14 81.6 89 48.3
Hma1.2p1_0091F.1_g046310 Hydrangea macrophylla HOM05D001248 ORTHO05D001183 7.8e-14 81.3 73 58.9
MBI02_g28327_MAGBIO Magnolia biondii HOM05D001248 ORTHO05D001183 7.8e-14 81.3 71 57.7
QL05p073612 Quercus lobata HOM05D001248 ORTHO05D001183 7.8e-14 81.3 73 58.9
QL05p073976 Quercus lobata HOM05D001248 ORTHO05D001183 7.8e-14 81.3 73 58.9
Cc09_g01860 Coffea canephora HOM05D001248 ORTHO05D001183 1.0e-13 80.9 83 53.0
Rhsim13G0155900 Rhododendron simsii HOM05D001248 ORTHO05D001183 1.0e-13 80.9 72 58.3
BolC9t55907H Brassica oleracea HOM05D001248 ORTHO05D104263 1.3e-13 80.5 50 88.0
CSS0000175 Camellia sinensis var. sinensis HOM05D001248 ORTHO05D001183 1.3e-13 80.5 73 56.2
CSS0017819 Camellia sinensis var. sinensis HOM05D001248 ORTHO05D001183 1.3e-13 80.5 73 56.2
MD10G1318600 Malus domestica HOM05D001248 ORTHO05D001183 1.3e-13 80.5 73 54.8
Actinidia26926 Actinidia chinensis HOM05D001248 ORTHO05D001183 1.7e-13 80.1 73 56.2
Duzib192G0336 Durio zibethinus HOM05D001248 ORTHO05D001183 1.7e-13 80.1 73 56.2
PGR004G1303 Punica granatum HOM05D001248 ORTHO05D001183 1.7e-13 80.1 73 54.8
TAR629G0756 Trochodendron aralioides HOM05D001248 ORTHO05D001183 1.7e-13 80.1 86 53.5
CANSAT56G0591 Cannabis sativa HOM05D001248 ORTHO05D001183 2.3e-13 79.7 88 52.3
ClCG03G004840 Citrullus lanatus HOM05D001248 ORTHO05D001183 2.3e-13 79.7 77 57.1
Ciclev10016130m.g Citrus clementina HOM05D001248 ORTHO05D001183 2.3e-13 79.7 73 57.5
Dinv20036 Davidia involucrata HOM05D001248 ORTHO05D001183 2.3e-13 79.7 73 57.5
Aqoxy1G03272 Aquilegia oxysepala HOM05D001248 ORTHO05D001183 3.0e-13 79.3 73 53.4
Oeu033194.1 Olea europaea HOM05D001248 ORTHO05D001183 3.0e-13 79.3 106 43.4
PSO832G4370 Papaver somniferum HOM05D001248 ORTHO05D001183 3.0e-13 79.3 73 57.5
MELO3C002468.2 Cucumis melo HOM05D001248 ORTHO05D001183 3.9e-13 79.0 77 57.1
PGR042G1674 Punica granatum HOM05D001248 ORTHO05D001183 3.9e-13 79.0 76 52.6
unitig_0.g960 Utricularia gibba HOM05D001248 ORTHO05D001183 3.9e-13 79.0 73 52.1
CDE05G0050 Ceratophyllum demersum HOM05D001248 ORTHO05D001183 5.1e-13 78.6 97 46.4
Eucgr.D01307 Eucalyptus grandis HOM05D001248 ORTHO05D001183 5.1e-13 78.6 73 53.4
Lsat_1_v5_gn_4_59981 Lactuca sativa HOM05D001248 ORTHO05D001183 5.1e-13 78.6 84 51.2
Lj6g0027949 Lotus japonicus HOM05D001248 ORTHO05D001183 5.1e-13 78.6 73 53.4
SalBow8G4247 Salvia bowleyana HOM05D001248 ORTHO05D001183 5.1e-13 78.6 73 56.2
SGA_v2.0_scaffold89G27460 Striga asiatica HOM05D001248 ORTHO05D001183 5.1e-13 78.6 73 54.8
MSTRG.13146 Avicennia marina HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 54.8
CiPaw.10G069700 Carya illinoinensis HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 54.8
CsaV3_1G010880 Cucumis sativus L. HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 57.5
DCAR_004207 Daucus carota HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 56.2
FvH4_3g02360 Fragaria vesca HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 52.1
Glyma.07G259300 Glycine max HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 53.4
Phvul.003G077400 Phaseolus vulgaris HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 53.4
SGA_v2.0_scaffold8G04346 Striga asiatica HOM05D001248 ORTHO05D001183 6.6e-13 78.2 73 53.4
TWI38G0653 Tripterygium wilfordii HOM05D001248 ORTHO05D001183 6.6e-13 78.2 72 58.3
Eucgr.E04078 Eucalyptus grandis HOM05D001248 ORTHO05D001183 8.7e-13 77.8 73 52.1
Potri.011G001000 Populus trichocarpa HOM05D001248 ORTHO05D001183 8.7e-13 77.8 88 48.9
Sabra11G0000400 Salix brachista HOM05D001248 ORTHO05D350151 8.7e-13 77.8 71 56.3
FAN25G1592 Fragaria x ananassa HOM05D001248 ORTHO05D001183 1.1e-12 77.4 72 52.8
Hma1.2p1_1142F.1_g261040 Hydrangea macrophylla HOM05D001248 ORTHO05D001183 1.1e-12 77.4 73 56.2
Lj1C1228T8 Lonicera japonica HOM05D001248 ORTHO05D001183 1.1e-12 77.4 80 50.0
PSO210G5511 Papaver somniferum HOM05D001248 ORTHO05D001183 1.1e-12 77.4 73 56.2
RcHm_v2.0_Chr5g0003581 Rosa chinensis HOM05D001248 ORTHO05D001183 1.1e-12 77.4 73 52.1
TAR627G0516 Trochodendron aralioides HOM05D001248 ORTHO05D001183 1.1e-12 77.4 88 50.0
arahy.Tifrunner.gnm1.ann1.FJ2VI4 Arachis hypogaea HOM05D001248 ORTHO05D001183 1.9e-12 76.6 84 48.8
arahy.Tifrunner.gnm1.ann1.HDE4UL Arachis hypogaea HOM05D001248 ORTHO05D001183 1.9e-12 76.6 84 48.8
HPP92_017601 Vanilla planifolia HOM05D001248 ORTHO05D001183 1.9e-12 76.6 73 53.4
CSS0049030 Camellia sinensis var. sinensis HOM05D001248 ORTHO05D001183 2.5e-12 76.3 88 48.9
Migut.M01301 Erythranthe guttata HOM05D001248 ORTHO05D001183 2.5e-12 76.3 73 53.4
Glyma.17G015000 Glycine max HOM05D001248 ORTHO05D001183 2.5e-12 76.3 73 50.7
Nn1g00057 Nelumbo nucifera HOM05D001248 ORTHO05D001183 2.5e-12 76.3 73 53.4
Nn1g07112 Nelumbo nucifera HOM05D001248 ORTHO05D001183 2.5e-12 76.3 73 53.4
VMungo1215G0641 Vigna mungo HOM05D001248 ORTHO05D001183 3.3e-12 75.9 73 50.7
Gohir.D10G013800 Gossypium hirsutum HOM05D001248 ORTHO05D001183 4.3e-12 75.5 88 45.5
Lj4g0012349 Lotus japonicus HOM05D001248 ORTHO05D001183 4.3e-12 75.5 88 50.0
Ah.06g185670 Amaranthus hybridus HOM05D001248 ORTHO05D001183 5.6e-12 75.1 72 56.9
Gorai.011G015600 Gossypium raimondii HOM05D001248 ORTHO05D001183 5.6e-12 75.1 88 44.3
HanXRQChr16g0515901 Helianthus annuus HOM05D001248 ORTHO05D001183 5.6e-12 75.1 73 56.2
Manes.17G037400 Manihot esculenta HOM05D001248 ORTHO05D001183 5.6e-12 75.1 73 57.5
MBI18_g24802_MAGBIO Magnolia biondii HOM05D001248 ORTHO05D001183 7.3e-12 74.7 84 50.0
Psat4g007240 Pisum sativum HOM05D001248 ORTHO05D001183 7.3e-12 74.7 82 48.8
ATR0752G062 Amborella trichopoda HOM05D001248 ORTHO05D001183 9.6e-12 74.3 73 49.3
Haze_06777 Corylus avellana HOM05D001248 ORTHO05D001183 9.6e-12 74.3 73 50.7
Cfa000244 Carpinus fangiana HOM05D001248 ORTHO05D001183 1.2e-11 73.9 88 45.5
Medtr4g131930 Medicago truncatula HOM05D001248 ORTHO05D001183 1.2e-11 73.9 82 50.0
Sed0013941 Sechium edule HOM05D001248 ORTHO05D001183 1.6e-11 73.6 73 53.4
Hund23261 Selenicereus undatus HOM05D001248 ORTHO05D001183 2.1e-11 73.2 73 54.8
arahy.Tifrunner.gnm1.ann1.6BSH1Y Arachis hypogaea HOM05D001248 ORTHO05D001183 4.7e-11 72.0 73 49.3
arahy.Tifrunner.gnm1.ann1.A6I4VR Arachis hypogaea HOM05D001248 ORTHO05D001183 4.7e-11 72.0 73 49.3
arahy.Tifrunner.gnm1.ann1.L23BE1 Arachis hypogaea HOM05D001248 ORTHO05D001183 4.7e-11 72.0 73 49.3
Gohir.A10G013800 Gossypium hirsutum HOM05D001248 ORTHO05D001183 4.7e-11 72.0 88 44.3
AUR62015739 Chenopodium quinoa HOM05D001248 ORTHO05D001183 8.1e-11 71.2 76 51.3
Os07g0102400 Oryza sativa ssp. japonica HOM05D001248 ORTHO05D001183 1.1e-10 70.9 71 54.9
ECA236G1468 Erigeron canadensis HOM05D001248 ORTHO05D001183 1.4e-10 70.5 73 47.9
HanXRQChr16g0516061 Helianthus annuus HOM05D001248 ORTHO05D001183 1.4e-10 70.5 72 48.6
Medtr2g022880 Medicago truncatula HOM05D001248 ORTHO05D001183 1.4e-10 70.5 73 50.7
Oeu063905.2 Olea europaea HOM05D001248 ORTHO05D001183 1.4e-10 70.5 128 40.6
Sc16g0006300 Simmondsia chinensis HOM05D001248 ORTHO05D001183 1.4e-10 70.5 97 42.3
BcaB05g24907 Brassica carinata HOM05D000070 ORTHO05D003315 2.4e-10 69.7 50 76.0
SalBow1G7691 Salvia bowleyana HOM05D001248 ORTHO05D001183 2.4e-10 69.7 73 52.1
AUR62020471 Chenopodium quinoa HOM05D001248 ORTHO05D001183 3.1e-10 69.3 76 50.0
Sc03g0008700 Simmondsia chinensis HOM05D001248 ORTHO05D001183 3.1e-10 69.3 88 44.3
TPR.G7635 Trifolium pratense HOM05D001248 ORTHO05D001183 5.2e-10 68.6 73 50.7
Ah.09g235040 Amaranthus hybridus HOM05D001248 ORTHO05D001183 1.2e-09 67.4 73 47.9
Psat1g181880 Pisum sativum HOM05D001248 ORTHO05D001183 1.2e-09 67.4 73 46.6
Sc17g0007250 Simmondsia chinensis HOM05D001248 ORTHO05D001183 1.5e-09 67.0 73 43.8
Lsat_1_v5_gn_7_17520 Lactuca sativa HOM05D001248 ORTHO05D001183 2.0e-09 66.6 72 45.8
arahy.Tifrunner.gnm1.ann1.KAI8DY Arachis hypogaea HOM05D001248 ORTHO05D001183 5.8e-09 65.1 79 41.8
EL10Ac4g07847 Beta vulgaris HOM05D001248 ORTHO05D001183 5.8e-09 65.1 90 40.0
A02p19940 Brassica napus HOM05D000070 ORTHO05D024215 5.8e-09 65.1 50 72.0
Zm00001eb118330 Zea mays HOM05D001248 ORTHO05D001183 5.8e-09 65.1 71 49.3
HanXRQChr05g0129611 Helianthus annuus HOM05D001248 ORTHO05D001183 9.9e-09 64.3 73 43.8
Zm00001eb298130 Zea mays HOM05D001248 ORTHO05D001183 1.7e-08 63.5 70 48.6
Ah.04g165760 Amaranthus hybridus HOM05D001248 ORTHO05D001183 3.8e-08 62.4 84 46.4
Os03g0565600 Oryza sativa ssp. japonica HOM05D001248 ORTHO05D001183 3.8e-08 62.4 73 46.6
Hund23484 Selenicereus undatus HOM05D001248 ORTHO05D001183 6.4e-08 61.6 73 42.5
AUR62012680 Chenopodium quinoa HOM05D001248 ORTHO05D001183 8.4e-08 61.2 87 37.9
AUR62021976 Chenopodium quinoa HOM05D001248 ORTHO05D001183 8.4e-08 61.2 87 37.9
SEGI_40610 Sequoiadendron giganteum HOM05D001248 ORTHO05D001183 8.4e-08 61.2 73 41.1
BcaC03g15575 Brassica carinata HOM05D000070 ORTHO05D024215 1.1e-07 60.8 50 70.0
BolC2t09290H Brassica oleracea HOM05D000070 ORTHO05D003315 1.1e-07 60.8 50 70.0
Nitab4.5_0000994g0040 Nicotiana tabacum HOM05D001248 ORTHO05D001183 2.4e-07 59.7 40 70.0
GSVIVG01004800001 Vitis vinifera HOM05D001248 ORTHO05D001183 5.4e-07 58.5 37 67.6
GSVIVG01005610001 Vitis vinifera HOM05D001248 ORTHO05D001183 5.4e-07 58.5 37 67.6
MBI02_g35757_MAGBIO Magnolia biondii HOM05D001248 ORTHO05D001183 9.3e-07 57.8 73 46.6
BraA02t07030Z Brassica rapa HOM05D000070 ORTHO05D024215 1.6e-06 57.0 50 68.0
PGR042G3163 Punica granatum HOM05D001248 ORTHO05D001183 3.5e-06 55.8 73 45.2
vmacro19934 Vaccinium macrocarpon HOM05D001248 ORTHO05D427103 6.0e-06 55.1 73 43.8


User provided reference genes

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