Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 2.0e-73 279.3 170 100.0
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 2.0e-73 279.3 170 100.0
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 2.0e-73 279.3 170 100.0
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.1e-66 256.9 175 88.6
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 7.5e-60 234.2 176 84.7
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 7.5e-60 234.2 171 86.0
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 5.0e-40 168.3 182 66.5
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 4.7e-38 161.8 180 68.3
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 5.8e-36 154.8 184 63.6
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 4.1e-34 148.7 180 66.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 5.4e-34 148.3 189 63.5
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.2e-25 120.6 184 55.4
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.7e-24 116.7 113 67.3
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 3.4e-20 102.4 173 43.9
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.4e-20 102.1 173 43.9
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-19 100.5 173 43.4
BcaC05g28877 Brassica carinata HOM05D026499 ORTHO05D027731 1.9e-18 96.7 122 64.8
C05p50000 Brassica napus HOM05D026499 ORTHO05D027731 1.9e-18 96.7 122 64.8
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 1.2e-17 94.0 166 46.4
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-16 90.5 143 46.9
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.7e-16 90.1 178 46.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.1e-15 87.4 81 59.3
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.6e-14 83.6 65 66.2
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.1e-14 83.2 71 60.6
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 1.4e-13 80.5 168 41.7
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.8e-13 80.1 132 44.7
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 3.1e-13 79.3 158 46.2
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 4.0e-13 79.0 71 57.7
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 5.3e-13 78.6 166 47.6
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 6.9e-13 78.2 71 56.3
Thhalv10015987m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 6.9e-13 78.2 172 40.1
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 9.0e-13 77.8 63 65.1
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 1.2e-12 77.4 71 56.3
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.6e-12 76.3 68 61.8
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 4.5e-12 75.5 170 39.4
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 4.5e-12 75.5 168 38.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 5.8e-12 75.1 66 60.6
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 5.8e-12 75.1 53 69.8
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 5.8e-12 75.1 145 40.7
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 9.9e-12 74.3 75 57.3
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 9.9e-12 74.3 48 79.2
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-11 73.9 63 63.5
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.2e-11 73.2 67 55.2
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.2e-11 73.2 142 43.7
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.2e-11 73.2 166 46.4
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.2e-11 73.2 74 56.8
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 2.9e-11 72.8 69 60.9
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 2.9e-11 72.8 135 48.9
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.9e-11 72.8 144 41.7
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.9e-11 72.8 46 71.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.9e-11 72.8 56 64.3
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 3.8e-11 72.4 76 63.2
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 3.8e-11 72.4 159 48.4
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 4.9e-11 72.0 63 61.9
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 6.4e-11 71.6 64 56.2
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 8.4e-11 71.2 67 55.2
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 8.4e-11 71.2 69 55.1
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 1.1e-10 70.9 65 56.9
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.4e-10 70.5 161 33.5
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.4e-10 70.5 148 48.6
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.9e-10 70.1 72 58.3
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.9e-10 70.1 151 35.8
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 2.4e-10 69.7 54 66.7
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 2.4e-10 69.7 54 66.7
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.4e-10 69.7 67 58.2
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.4e-10 69.7 67 58.2
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.4e-10 69.7 143 46.9
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 3.2e-10 69.3 72 52.8
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.2e-10 68.9 46 71.7
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 4.2e-10 68.9 81 50.6
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 5.4e-10 68.6 45 71.1
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.1e-10 68.2 55 63.6
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 7.1e-10 68.2 55 63.6
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 7.1e-10 68.2 46 71.7
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 7.1e-10 68.2 63 58.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 9.3e-10 67.8 67 53.7
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 1.2e-09 67.4 171 38.0
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.6e-09 67.0 113 43.4
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-09 67.0 171 38.0
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.1e-09 66.6 77 53.2
A03p11070 Brassica napus HOM05D004188 ORTHO05D004445 2.7e-09 66.2 170 36.5
BraA03t10421Z Brassica rapa HOM05D004188 ORTHO05D004445 2.7e-09 66.2 170 36.5
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 2.7e-09 66.2 158 34.8
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 3.5e-09 65.9 69 56.5
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 4.6e-09 65.5 147 40.1
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 4.6e-09 65.5 76 51.3
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 6.0e-09 65.1 67 55.2
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 6.0e-09 65.1 141 45.4
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 6.0e-09 65.1 71 53.5
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 7.9e-09 64.7 67 53.7
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.0e-08 64.3 65 52.3
MELO3C012432.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.0e-08 64.3 56 57.1
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.0e-08 64.3 161 39.8
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.0e-08 64.3 66 50.0
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.0e-08 64.3 166 43.4
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.3e-08 63.9 69 55.1
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.8e-08 63.5 67 50.7
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 1.8e-08 63.5 71 52.1
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.8e-08 63.5 159 47.8
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 1.8e-08 63.5 78 52.6
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.8e-08 63.5 145 40.7
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 2.3e-08 63.2 62 58.1
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.3e-08 63.2 59 54.2
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 2.3e-08 63.2 149 47.7
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.0e-08 62.8 63 54.0
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 3.0e-08 62.8 65 53.8
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 3.0e-08 62.8 126 45.2
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 3.0e-08 62.8 63 52.4
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.9e-08 62.4 67 47.8
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 6.7e-08 61.6 48 64.6
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 6.7e-08 61.6 46 58.7
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 8.7e-08 61.2 180 32.8
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 8.7e-08 61.2 166 36.1
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 8.7e-08 61.2 167 37.7
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 8.7e-08 61.2 169 34.9
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 54 53.7
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.5e-07 60.5 166 41.0
C09p53350 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-07 59.7 59 54.2
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 2.5e-07 59.7 45 60.0
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.3e-07 59.3 49 55.1
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 4.3e-07 58.9 72 52.8
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 4.3e-07 58.9 72 52.8
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 4.3e-07 58.9 148 43.2
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 9.6e-07 57.8 66 48.5
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 1.3e-06 57.4 62 51.6
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 1.6e-06 57.0 64 48.4
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 2.1e-06 56.6 51 52.9
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 2.1e-06 56.6 168 35.7
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 2.8e-06 56.2 79 41.8
BraA05t22132Z Brassica rapa HOM05D026499 ORTHO05D027731 3.7e-06 55.8 122 54.9
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 3.7e-06 55.8 49 59.2
Carub.0008s2131 Capsella rubella HOM05D004188 ORTHO05D004445 3.7e-06 55.8 119 39.5
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 6.2e-06 55.1 160 38.1
BcaC04g19723 Brassica carinata HOM05D004188 ORTHO05D004445 6.2e-06 55.1 75 49.3


User provided reference genes

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