Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.1e-146 522.3 260 100.0
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 6.9e-105 384.4 283 73.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-90 337.0 299 65.2
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.8e-68 263.5 165 82.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.4e-65 253.8 234 63.7
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 7.0e-41 171.8 139 69.1
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 4.5e-40 169.1 134 69.4
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 4.5e-40 169.1 134 69.4
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 4.5e-40 169.1 134 69.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 1.0e-39 167.9 134 68.7
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 8.5e-39 164.9 134 67.9
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 1.1e-38 164.5 134 67.2
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-37 161.0 134 66.4
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-37 161.0 134 66.4
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.2e-37 161.0 134 66.4
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 1.2e-37 161.0 134 66.4
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 1.2e-37 161.0 134 66.4
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 1.6e-37 160.6 135 65.2
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 2.1e-37 160.2 134 66.4
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 3.6e-37 159.5 134 64.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 4.0e-36 156.0 144 61.8
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 6.8e-36 155.2 134 64.2
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 8.8e-36 154.8 136 64.7
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.2e-35 154.5 86 88.4
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 1.3e-34 151.0 134 61.9
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 8.3e-34 148.3 134 61.2
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 7.0e-33 145.2 93 80.6
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 5.5e-30 135.6 134 53.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 7.2e-30 135.2 134 52.2
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.5e-30 134.8 134 55.2
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 9.5e-30 134.8 134 53.0
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 3.6e-29 132.9 134 52.2
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 4.7e-29 132.5 134 51.5
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 4.7e-29 132.5 134 52.2
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 4.7e-29 132.5 134 51.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 4.7e-29 132.5 134 53.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 1.0e-28 131.3 134 53.7
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.0e-28 131.3 134 50.7
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 1.0e-28 131.3 134 53.0
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 1.4e-28 131.0 134 51.5
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 53.7
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 51.5
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 51.5
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 51.5
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 51.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.8e-28 130.6 134 50.7
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 3.0e-28 129.8 134 50.7
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 3.0e-28 129.8 134 53.0
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 4.0e-28 129.4 134 53.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.0e-28 129.4 145 49.7
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 50.0
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 51.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 51.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 51.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 51.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 5.2e-28 129.0 134 50.7
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 5.2e-28 129.0 145 50.3
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 6.8e-28 128.6 134 51.5
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 6.8e-28 128.6 120 65.0
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 8.9e-28 128.3 134 50.0
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 1.2e-27 127.9 134 50.0
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-27 127.5 134 50.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.0e-27 127.1 134 50.7
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 2.6e-27 126.7 134 50.7
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 2.6e-27 126.7 134 51.5
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 2.6e-27 126.7 134 52.2
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 3.4e-27 126.3 134 50.7
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 3.4e-27 126.3 134 50.0
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 4.4e-27 125.9 134 50.7
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 4.4e-27 125.9 134 50.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 4.4e-27 125.9 134 50.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 7.5e-27 125.2 134 49.3
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 7.5e-27 125.2 134 49.3
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 7.5e-27 125.2 134 50.7
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 9.8e-27 124.8 134 50.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 9.8e-27 124.8 134 49.3
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.3e-26 124.4 134 50.0
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.7e-26 124.0 134 51.5
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 1.7e-26 124.0 134 49.3
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.7e-26 124.0 134 50.0
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.7e-26 124.0 134 50.7
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 2.2e-26 123.6 144 46.5
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 2.8e-26 123.2 145 50.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 2.8e-26 123.2 134 49.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 3.7e-26 122.9 136 47.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 3.7e-26 122.9 134 49.3
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 3.7e-26 122.9 134 47.8
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 6.3e-26 122.1 134 47.0
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 8.3e-26 121.7 134 48.5
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 8.3e-26 121.7 134 50.7
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 8.3e-26 121.7 112 63.4
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.3e-26 121.7 147 46.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 8.3e-26 121.7 134 48.5
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.4e-25 120.9 134 48.5
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.8e-25 120.6 134 50.7
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.8e-25 120.6 134 47.8
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 1.8e-25 120.6 145 49.0
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 2.4e-25 120.2 145 45.5
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 2.4e-25 120.2 134 47.8
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 4.1e-25 119.4 113 65.5
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 7.0e-25 118.6 134 49.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 1.6e-24 117.5 134 46.3
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 2.0e-24 117.1 134 46.3
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.0e-24 117.1 110 60.9
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 3.5e-24 116.3 145 45.5
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 4.5e-24 115.9 134 47.0
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 4.5e-24 115.9 134 47.0
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 5.9e-24 115.5 134 47.0
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.0e-23 114.8 127 56.7
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 1.7e-23 114.0 134 47.0
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.8e-23 112.8 141 43.3
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 6.6e-23 112.1 121 57.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 3.3e-22 109.8 134 44.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 5.6e-22 109.0 112 58.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 2.3e-20 103.6 119 48.7
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 5.2e-20 102.4 109 56.0
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.2e-19 101.3 113 55.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.5e-19 100.9 114 49.1
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-19 100.1 109 56.9
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.4e-19 99.8 125 53.6
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 4.4e-19 99.4 93 60.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 7.5e-19 98.6 112 54.5
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 7.5e-19 98.6 112 54.5
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 9.8e-19 98.2 123 53.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 9.8e-19 98.2 123 53.7
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.4e-17 93.6 117 53.8
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.2e-17 93.2 123 52.8
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.4e-17 92.4 113 54.0
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.2e-16 91.3 111 53.2
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 7.8e-16 88.6 113 54.0
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.0e-15 88.2 119 51.3
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.0e-15 88.2 119 51.3
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-15 87.8 111 52.3
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-15 87.8 111 52.3
BolC7t44010H Brassica oleracea HOM05D000067 ORTHO05D000280 1.7e-15 87.4 54 81.5
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.7e-15 87.4 50 82.0
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.3e-15 87.0 100 50.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.6e-15 85.1 134 38.8
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.6e-15 85.1 134 34.3
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.9e-14 84.0 134 35.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.9e-14 84.0 134 36.6
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.3e-14 83.2 144 33.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 3.3e-14 83.2 50 78.0
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 3.3e-14 83.2 50 80.0
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 5.6e-14 82.4 127 44.9
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 7.3e-14 82.0 50 80.0
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 3.1e-12 76.6 83 56.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.0e-11 73.9 50 70.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 5.8e-11 72.4 114 44.7
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 4.9e-10 69.3 67 49.3
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 6.4e-10 68.9 43 74.4
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 6.4e-10 68.9 67 50.7
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 6.4e-10 68.9 45 71.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 8.3e-10 68.6 119 38.7
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 8.3e-10 68.6 41 80.5
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 3.2e-09 66.6 67 47.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 5.4e-09 65.9 48 62.5
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 9.2e-09 65.1 42 69.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.0e-07 59.3 121 38.8
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.0e-07 59.3 121 38.8
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 5.0e-07 59.3 48 52.1
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 3.3e-06 56.6 98 41.8
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 3.3e-06 56.6 114 38.6
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.3e-06 56.2 126 36.5


User provided reference genes

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